Wall clock time and date at job start Tue Mar 31 2020 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47371 * 2 1 4 4 C 1.36940 * 120.00524 * 89.44579 * 3 2 1 5 5 H 1.08000 * 119.99516 * 33.85376 * 4 3 2 6 6 C 1.38809 * 120.00427 * 213.85444 * 4 3 2 7 7 N 1.31615 * 119.99973 * 22.84760 * 6 4 3 8 8 Si 1.86797 * 120.00065 * 202.85031 * 6 4 3 9 9 H 1.48501 * 109.47129 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47309 * 119.99956 * 8 6 4 11 11 H 1.48498 * 109.47124 * 240.00250 * 8 6 4 12 12 C 1.46509 * 119.99824 * 269.17536 * 3 2 1 13 13 C 1.50696 * 109.47078 * 270.27459 * 12 3 2 14 14 C 1.38270 * 119.94245 * 269.73006 * 13 12 3 15 15 C 1.38148 * 120.05256 * 179.72824 * 14 13 12 16 16 C 1.38730 * 119.94585 * 0.56050 * 15 14 13 17 17 O 1.35898 * 120.05527 * 179.68402 * 16 15 14 18 18 C 1.42895 * 117.00046 * 0.02562 * 17 16 15 19 19 C 1.50704 * 109.47084 * 179.97438 * 18 17 16 20 20 N 1.34776 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.21282 * 119.99928 * 0.02562 * 19 18 17 22 22 C 1.38733 * 119.88671 * 359.71156 * 16 15 14 23 23 C 1.38142 * 119.94561 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.46878 * 60.00490 * 1 2 3 25 25 H 1.08995 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47367 * 300.00555 * 1 2 3 27 27 H 1.08997 * 109.47367 * 239.99445 * 2 1 3 28 28 H 1.08996 * 109.46721 * 119.99953 * 2 1 3 29 29 H 0.96995 * 120.00280 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47104 * 30.27642 * 12 3 2 31 31 H 1.09000 * 109.46930 * 150.27470 * 12 3 2 32 32 H 1.08003 * 119.96968 * 359.97241 * 14 13 12 33 33 H 1.07998 * 120.02384 * 180.24920 * 15 14 13 34 34 H 1.08997 * 109.47843 * 300.00103 * 18 17 16 35 35 H 1.09008 * 109.47213 * 60.00551 * 18 17 16 36 36 H 0.96994 * 120.00205 * 0.02562 * 20 19 18 37 37 H 0.97006 * 119.99854 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.02778 * 179.97438 * 22 16 15 39 39 H 1.07998 * 119.97435 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2359 2.0306 1.1858 5 1 2.5851 1.4800 2.0468 6 6 2.0075 3.3964 1.2812 7 7 1.1881 3.9872 0.4376 8 14 2.8633 4.3961 2.6070 9 1 3.7259 3.5027 3.4213 10 1 3.6982 5.4476 1.9726 11 1 1.8458 5.0325 3.4814 12 6 2.2798 2.0656 -1.2687 13 6 3.7069 1.8212 -1.6866 14 6 4.7028 2.6915 -1.2836 15 6 6.0126 2.4665 -1.6608 16 6 6.3266 1.3726 -2.4541 17 8 7.6134 1.1527 -2.8318 18 6 8.5924 2.0880 -2.3750 19 6 9.9506 1.6845 -2.8885 20 7 11.0343 2.4247 -2.5813 21 8 10.0685 0.6938 -3.5780 22 6 5.3247 0.5040 -2.8618 23 6 4.0174 0.7297 -2.4767 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.0288 4.9416 0.5040 30 1 1.6060 1.6813 -2.0344 31 1 2.1159 3.1361 -1.1445 32 1 4.4570 3.5458 -0.6702 33 1 6.7907 3.1444 -1.3424 34 1 8.3448 3.0830 -2.7447 35 1 8.6048 2.0980 -1.2851 36 1 10.9401 3.2168 -2.0295 37 1 11.9085 2.1651 -2.9121 38 1 5.5665 -0.3481 -3.4799 39 1 3.2371 0.0536 -2.7934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725798489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:22 Heat of formation + Delta-G solvation = -31.387113 kcal Electronic energy + Delta-G solvation = -21307.702847 eV Core-core repulsion = 18023.297547 eV Total energy + Delta-G solvation = -3284.405300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.21663 -39.11493 -37.31096 -35.47535 -34.02150 -31.84787 -30.90147 -30.44379 -28.82966 -27.94857 -25.24376 -23.45102 -22.49486 -21.33670 -20.63058 -19.86693 -18.18448 -17.81564 -16.77384 -16.50482 -16.36480 -15.37122 -14.92862 -14.54735 -14.32809 -14.04847 -13.90007 -13.74017 -13.53406 -12.89238 -12.60052 -12.44538 -12.20814 -11.96885 -11.25467 -11.17965 -10.94065 -10.77596 -10.62321 -10.51796 -10.33666 -10.15414 -10.05750 -9.96354 -9.87584 -9.76577 -8.55120 -8.44423 -7.54603 -6.65235 -5.82702 -3.34027 1.89367 2.01880 2.30620 2.65212 3.29747 3.40098 3.43285 3.79302 4.31396 4.48055 4.51809 4.84220 4.90031 5.28304 5.29040 5.37269 5.62740 5.79450 5.90464 6.04659 6.13016 6.18787 6.40873 6.42500 6.48140 6.51910 6.66035 6.76913 6.80571 6.89756 6.98416 7.04239 7.23712 7.28337 7.41457 7.68557 7.77942 7.80152 7.92451 8.47346 9.14675 9.78821 10.35614 11.17844 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.004487 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.581663 B = 6238.978851 C = 7305.820317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.577 5.577 4 C -0.248 4.248 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.172 3.828 13 C -0.099 4.099 14 C -0.061 4.061 15 C -0.211 4.211 16 C 0.097 3.903 17 O -0.297 6.297 18 C 0.042 3.958 19 C 0.521 3.479 20 N -0.853 5.853 21 O -0.521 6.521 22 C -0.150 4.150 23 C -0.084 4.084 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.254 0.746 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.406 0.594 38 H 0.121 0.879 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 -0.374 -4.984 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.297 5.297 4 C -0.378 4.378 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.046 3.954 13 C -0.102 4.102 14 C -0.080 4.080 15 C -0.230 4.230 16 C 0.053 3.947 17 O -0.211 6.211 18 C -0.038 4.038 19 C 0.304 3.696 20 N -0.420 5.420 21 O -0.395 6.395 22 C -0.169 4.169 23 C -0.103 4.103 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.238 0.762 38 H 0.139 0.861 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.812 -1.068 -5.523 13.992 hybrid contribution 0.848 1.178 1.085 1.813 sum 13.660 0.111 -4.437 14.363 Atomic orbital electron populations 1.22269 0.99598 0.98382 1.01925 1.20865 0.91947 0.87298 0.98265 1.43826 1.73742 1.10130 1.01999 1.19117 1.37493 0.91203 0.89966 0.92120 1.25018 0.97623 0.98457 0.98029 1.69979 1.33698 1.10193 1.38962 0.86430 0.79611 0.80301 0.81797 1.20115 1.21411 1.21663 1.20046 0.86489 1.02522 0.86298 1.21217 1.00134 0.93809 0.95052 1.20912 0.91136 0.99121 0.96815 1.21138 0.98198 0.99266 1.04369 1.18848 0.82589 0.95908 0.97335 1.86079 1.14299 1.49220 1.71489 1.22323 0.86785 0.94124 1.00541 1.20209 0.86081 0.83216 0.80082 1.43668 1.10084 1.31288 1.56930 1.90794 1.86130 1.25718 1.36828 1.20280 0.91418 1.00367 1.04809 1.20895 0.94630 0.97247 0.97558 0.93773 0.95068 0.92682 0.94763 0.94121 0.93581 0.94899 0.87438 0.85879 0.86600 0.89078 0.89030 0.76841 0.76204 0.86130 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.14 2.98 6.39 -4.04 -0.03 2.95 16 3 N -0.58 -13.88 2.43 -174.61 -0.43 -14.31 16 4 C -0.25 -6.53 9.49 -15.06 -0.14 -6.68 16 5 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 6 C 0.01 0.22 4.95 -17.43 -0.09 0.13 16 7 N -0.89 -24.24 11.32 55.49 0.63 -23.61 16 8 Si 0.89 20.66 29.61 -169.99 -5.03 15.63 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.17 3.91 5.41 -5.19 -0.03 3.88 16 13 C -0.10 -2.00 5.46 -104.60 -0.57 -2.57 16 14 C -0.06 -1.19 9.69 -39.60 -0.38 -1.57 16 15 C -0.21 -3.51 9.04 -39.43 -0.36 -3.87 16 16 C 0.10 1.66 6.69 -39.22 -0.26 1.39 16 17 O -0.30 -4.78 9.67 -39.33 -0.38 -5.16 16 18 C 0.04 0.47 5.22 36.01 0.19 0.65 16 19 C 0.52 5.94 8.18 -10.98 -0.09 5.85 16 20 N -0.85 -5.29 8.87 31.22 0.28 -5.01 16 21 O -0.52 -8.60 17.34 -14.35 -0.25 -8.85 16 22 C -0.15 -2.58 9.99 -39.43 -0.39 -2.97 16 23 C -0.08 -1.52 9.69 -39.61 -0.38 -1.90 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.04 0.84 8.04 -51.93 -0.42 0.43 16 29 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.03 0.71 8.02 -51.93 -0.42 0.29 16 31 H 0.11 2.74 5.26 -51.93 -0.27 2.47 16 32 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 33 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 34 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.09 0.86 7.66 -51.92 -0.40 0.46 16 36 H 0.40 1.18 8.83 -40.82 -0.36 0.82 16 37 H 0.41 2.07 8.93 -40.82 -0.36 1.71 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 1.95 8.05 -52.49 -0.42 1.53 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -32.59 334.59 -7.76 -40.35 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.46 Total: 3.43 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.16 Total: -7.52 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.48 Total: -42.93 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.63 Total: -14.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.59 -7.76 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725798489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.966 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds