Wall clock time and date at job start Tue Mar 31 2020 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47371 * 2 1 4 4 C 1.36940 * 120.00524 * 89.44579 * 3 2 1 5 5 H 1.08000 * 119.99516 * 33.85376 * 4 3 2 6 6 C 1.38809 * 120.00427 * 213.85444 * 4 3 2 7 7 N 1.31615 * 119.99973 * 22.84760 * 6 4 3 8 8 Si 1.86797 * 120.00065 * 202.85031 * 6 4 3 9 9 H 1.48501 * 109.47129 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47309 * 119.99956 * 8 6 4 11 11 H 1.48498 * 109.47124 * 240.00250 * 8 6 4 12 12 C 1.46509 * 119.99824 * 269.17536 * 3 2 1 13 13 C 1.50696 * 109.47078 * 270.27459 * 12 3 2 14 14 C 1.38270 * 119.94245 * 269.73006 * 13 12 3 15 15 C 1.38148 * 120.05256 * 179.72824 * 14 13 12 16 16 C 1.38730 * 119.94585 * 0.56050 * 15 14 13 17 17 O 1.35898 * 120.05527 * 179.68402 * 16 15 14 18 18 C 1.42895 * 117.00046 * 0.02562 * 17 16 15 19 19 C 1.50704 * 109.47084 * 179.97438 * 18 17 16 20 20 N 1.34776 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.21282 * 119.99928 * 0.02562 * 19 18 17 22 22 C 1.38733 * 119.88671 * 359.71156 * 16 15 14 23 23 C 1.38142 * 119.94561 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.46878 * 60.00490 * 1 2 3 25 25 H 1.08995 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47367 * 300.00555 * 1 2 3 27 27 H 1.08997 * 109.47367 * 239.99445 * 2 1 3 28 28 H 1.08996 * 109.46721 * 119.99953 * 2 1 3 29 29 H 0.96995 * 120.00280 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47104 * 30.27642 * 12 3 2 31 31 H 1.09000 * 109.46930 * 150.27470 * 12 3 2 32 32 H 1.08003 * 119.96968 * 359.97241 * 14 13 12 33 33 H 1.07998 * 120.02384 * 180.24920 * 15 14 13 34 34 H 1.08997 * 109.47843 * 300.00103 * 18 17 16 35 35 H 1.09008 * 109.47213 * 60.00551 * 18 17 16 36 36 H 0.96994 * 120.00205 * 0.02562 * 20 19 18 37 37 H 0.97006 * 119.99854 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.02778 * 179.97438 * 22 16 15 39 39 H 1.07998 * 119.97435 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2359 2.0306 1.1858 5 1 2.5851 1.4800 2.0468 6 6 2.0075 3.3964 1.2812 7 7 1.1881 3.9872 0.4376 8 14 2.8633 4.3961 2.6070 9 1 3.7259 3.5027 3.4213 10 1 3.6982 5.4476 1.9726 11 1 1.8458 5.0325 3.4814 12 6 2.2798 2.0656 -1.2687 13 6 3.7069 1.8212 -1.6866 14 6 4.7028 2.6915 -1.2836 15 6 6.0126 2.4665 -1.6608 16 6 6.3266 1.3726 -2.4541 17 8 7.6134 1.1527 -2.8318 18 6 8.5924 2.0880 -2.3750 19 6 9.9506 1.6845 -2.8885 20 7 11.0343 2.4247 -2.5813 21 8 10.0685 0.6938 -3.5780 22 6 5.3247 0.5040 -2.8618 23 6 4.0174 0.7297 -2.4767 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.0288 4.9416 0.5040 30 1 1.6060 1.6813 -2.0344 31 1 2.1159 3.1361 -1.1445 32 1 4.4570 3.5458 -0.6702 33 1 6.7907 3.1444 -1.3424 34 1 8.3448 3.0830 -2.7447 35 1 8.6048 2.0980 -1.2851 36 1 10.9401 3.2168 -2.0295 37 1 11.9085 2.1651 -2.9121 38 1 5.5665 -0.3481 -3.4799 39 1 3.2371 0.0536 -2.7934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725798489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:22 Heat of formation + Delta-G solvation = -52.678932 kcal Electronic energy + Delta-G solvation = -21308.626129 eV Core-core repulsion = 18023.297547 eV Total energy + Delta-G solvation = -3285.328582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33287 -40.22902 -38.70049 -37.12702 -34.80314 -33.75613 -32.35140 -31.83868 -30.26444 -29.24429 -26.96599 -25.17689 -23.79244 -22.72159 -21.75281 -21.45324 -19.32740 -18.75435 -18.49680 -17.41867 -17.32857 -16.83689 -16.46839 -16.10228 -15.77305 -15.54854 -15.32323 -15.08812 -14.83585 -14.33102 -14.22283 -13.78599 -13.58689 -13.42557 -13.06505 -12.87215 -12.58416 -12.39440 -12.21999 -12.02055 -11.91470 -11.73339 -11.59245 -11.46145 -11.11694 -10.77145 -10.51180 -9.82017 -8.93688 -8.57162 -7.79389 -5.34880 0.52290 0.61012 1.44517 1.45436 1.49410 1.58688 1.74605 2.53811 2.88026 2.92158 3.28877 3.79247 3.90776 3.98300 4.04968 4.11699 4.13130 4.37486 4.46231 4.53265 4.62366 4.75278 4.84411 4.90599 4.94876 5.09279 5.24844 5.31687 5.40901 5.56392 5.57791 5.65845 5.77121 5.81595 5.92848 6.04654 6.30810 6.49079 6.53914 7.19899 7.23193 7.90437 8.42131 9.17973 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.004487 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.581663 B = 6238.978851 C = 7305.820317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 N -0.592 5.592 4 C -0.257 4.257 5 H 0.050 0.950 6 C -0.030 4.030 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.294 1.294 12 C 0.179 3.821 13 C -0.120 4.120 14 C -0.078 4.078 15 C -0.203 4.203 16 C 0.105 3.895 17 O -0.316 6.316 18 C 0.030 3.970 19 C 0.521 3.479 20 N -0.824 5.824 21 O -0.582 6.582 22 C -0.156 4.156 23 C -0.082 4.082 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.251 0.749 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.423 0.577 37 H 0.415 0.585 38 H 0.137 0.863 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.968 -0.389 -5.001 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.222 1.222 12 C 0.054 3.946 13 C -0.123 4.123 14 C -0.097 4.097 15 C -0.221 4.221 16 C 0.060 3.940 17 O -0.230 6.230 18 C -0.048 4.048 19 C 0.305 3.695 20 N -0.391 5.391 21 O -0.461 6.461 22 C -0.174 4.174 23 C -0.100 4.100 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.255 0.745 37 H 0.248 0.752 38 H 0.155 0.845 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.860 -1.045 -5.520 15.886 hybrid contribution 0.342 1.174 1.054 1.614 sum 15.201 0.129 -4.466 15.844 Atomic orbital electron populations 1.22128 0.98745 1.00092 1.00045 1.21001 0.92599 0.86041 0.99174 1.44025 1.74430 1.11037 1.01751 1.19222 1.37237 0.91684 0.90634 0.93190 1.25563 0.98139 0.99118 0.99899 1.70096 1.34988 1.10063 1.40577 0.85576 0.78531 0.79005 0.79613 1.19712 1.20819 1.22159 1.19823 0.88407 1.00531 0.85871 1.20967 0.98734 0.95499 0.97104 1.20853 0.92505 0.98810 0.97501 1.21339 0.97712 0.99615 1.03448 1.18931 0.83242 0.95418 0.96409 1.86066 1.14265 1.50917 1.71747 1.22731 0.85532 0.94441 1.02106 1.20333 0.87058 0.82729 0.79383 1.43448 1.09218 1.30844 1.55606 1.90777 1.86956 1.28476 1.39871 1.20515 0.91187 1.00983 1.04728 1.20953 0.95581 0.96611 0.96892 0.94664 0.91505 0.95413 0.92665 0.94258 0.93917 0.94755 0.90477 0.87792 0.83094 0.86214 0.86616 0.74536 0.75199 0.84542 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 10.24 71.98 0.74 -5.12 16 2 C 0.14 5.67 6.39 86.38 0.55 6.22 16 3 N -0.59 -28.78 2.43 -706.35 -1.72 -30.50 16 4 C -0.26 -13.77 9.49 84.03 0.80 -12.98 16 5 H 0.05 2.73 7.93 -2.91 -0.02 2.71 16 6 C -0.03 -1.60 4.95 84.86 0.42 -1.18 16 7 N -0.91 -51.26 11.32 21.65 0.25 -51.01 16 8 Si 0.94 42.88 29.61 68.60 2.03 44.92 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.18 8.28 5.41 85.63 0.46 8.75 16 13 C -0.12 -4.84 5.46 -19.85 -0.11 -4.95 16 14 C -0.08 -2.99 9.69 22.26 0.22 -2.77 16 15 C -0.20 -6.28 9.04 22.37 0.20 -6.08 16 16 C 0.10 3.32 6.69 22.51 0.15 3.47 16 17 O -0.32 -9.39 9.67 -73.37 -0.71 -10.10 16 18 C 0.03 0.57 5.22 71.24 0.37 0.94 16 19 C 0.52 10.63 8.18 87.66 0.72 11.34 16 20 N -0.82 -7.59 8.87 -173.53 -1.54 -9.13 16 21 O -0.58 -18.66 17.34 16.00 0.28 -18.38 16 22 C -0.16 -5.05 9.99 22.37 0.22 -4.82 16 23 C -0.08 -2.84 9.69 22.25 0.22 -2.62 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 2.03 8.06 -2.39 -0.02 2.01 16 28 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 29 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.03 1.51 8.02 -2.39 -0.02 1.49 16 31 H 0.08 4.08 5.26 -2.39 -0.01 4.06 16 32 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.15 3.46 6.30 -2.91 -0.02 3.44 16 34 H 0.12 1.62 7.66 -2.39 -0.02 1.60 16 35 H 0.12 1.67 7.66 -2.38 -0.02 1.66 16 36 H 0.42 0.78 8.83 -92.71 -0.82 -0.04 16 37 H 0.42 3.06 8.93 -92.70 -0.83 2.24 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.13 4.16 8.05 -2.91 -0.02 4.13 16 Total: -1.00 -72.25 334.59 2.97 -69.28 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.57 Total: 14.73 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.96 Total: -9.80 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -3.01 Total: -90.65 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.43 Total: -28.48 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.25 2.97 -69.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725798489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.605 kcal (2) G-P(sol) polarization free energy of solvation -72.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds