Wall clock time and date at job start Tue Mar 31 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00229 * 90.00338 * 3 2 1 5 5 C 1.50703 * 109.47324 * 89.99695 * 4 3 2 6 6 O 1.21291 * 119.99692 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00224 * 180.02562 * 5 4 3 8 8 C 1.37091 * 119.99993 * 180.02562 * 7 5 4 9 9 H 1.08006 * 120.00231 * 359.97438 * 8 7 5 10 10 C 1.38958 * 120.00093 * 179.97438 * 8 7 5 11 11 N 1.31407 * 119.99498 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00080 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46815 * 59.99911 * 12 10 8 14 14 H 1.48492 * 109.46880 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47161 * 300.00078 * 12 10 8 16 16 C 1.39936 * 119.99869 * 269.99947 * 3 2 1 17 17 C 1.38861 * 120.02194 * 359.73087 * 16 3 2 18 18 C 1.38113 * 119.98103 * 179.74336 * 17 16 3 19 19 C 1.38695 * 120.01711 * 0.50374 * 18 17 16 20 20 O 1.36003 * 119.97935 * 179.74599 * 19 18 17 21 21 C 1.42904 * 117.00239 * 0.02562 * 20 19 18 22 22 C 1.38698 * 120.04393 * 359.77037 * 19 18 17 23 23 C 1.38121 * 120.01574 * 359.97438 * 22 19 18 24 24 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 28 28 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 29 29 H 1.08996 * 109.47662 * 209.99843 * 4 3 2 30 30 H 1.08998 * 109.46853 * 330.00155 * 4 3 2 31 31 H 0.97002 * 119.99719 * 359.97438 * 7 5 4 32 32 H 0.96999 * 119.99728 * 179.97438 * 11 10 8 33 33 H 1.07998 * 120.00515 * 359.97438 * 17 16 3 34 34 H 1.07998 * 119.98935 * 180.23500 * 18 17 16 35 35 H 1.08997 * 109.47277 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.46693 * 300.00192 * 21 20 19 37 37 H 1.09004 * 109.46524 * 59.99706 * 21 20 19 38 38 H 1.08000 * 119.99569 * 179.97438 * 22 19 18 39 39 H 1.07997 * 120.00611 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8350 1.7037 6 8 4.4235 1.1557 1.0213 7 7 4.1388 2.3771 2.8515 8 6 5.4338 2.1621 3.2469 9 1 6.0909 1.5579 2.6389 10 6 5.9009 2.7215 4.4300 11 7 5.1016 3.4570 5.1695 12 14 7.6652 2.4280 4.9692 13 1 8.5926 2.9512 3.9341 14 1 7.9129 3.1285 6.2548 15 1 7.8927 0.9713 5.1467 16 6 2.2516 2.0408 -1.2119 17 6 2.0256 1.3848 -2.4147 18 6 2.2510 2.0384 -3.6103 19 6 2.7129 3.3462 -3.6098 20 8 2.9395 3.9873 -4.7876 21 6 2.6800 3.2536 -5.9862 22 6 2.9443 4.0004 -2.4089 23 6 2.7144 3.3501 -1.2123 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.0956 3.1410 1.1384 30 1 1.5819 1.6877 2.0284 31 1 3.5488 2.9201 3.3973 32 1 5.4275 3.8472 5.9955 33 1 1.6702 0.3649 -2.4152 34 1 2.0717 1.5295 -4.5459 35 1 2.9008 3.8798 -6.8506 36 1 3.3094 2.3641 -6.0110 37 1 1.6312 2.9574 -6.0109 38 1 3.3043 5.0186 -2.4095 39 1 2.8950 3.8595 -0.2773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731212013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:40 Heat of formation + Delta-G solvation = -36.019733 kcal Electronic energy + Delta-G solvation = -21426.886966 eV Core-core repulsion = 18142.280781 eV Total energy + Delta-G solvation = -3284.606185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.97081 -38.69228 -37.45787 -35.37113 -33.86607 -31.59229 -31.15295 -30.58011 -29.01773 -27.53219 -26.03717 -24.42768 -23.08156 -21.83316 -20.59560 -19.11652 -18.12378 -17.88284 -16.55223 -16.21259 -15.98721 -15.54284 -14.77391 -14.75360 -14.55664 -13.85754 -13.78922 -13.54848 -13.36618 -13.07019 -12.88476 -12.45515 -12.36039 -12.21450 -11.82799 -11.68380 -11.53510 -11.30447 -11.11830 -10.99080 -10.86760 -10.44926 -10.35202 -10.21861 -9.50729 -9.28642 -8.71147 -8.32983 -7.97626 -6.68091 -6.41319 -3.83218 1.63151 1.94149 3.19529 3.25466 3.29033 3.38267 3.54825 3.87716 4.13495 4.19836 4.94484 5.03047 5.06866 5.09671 5.15216 5.18794 5.25089 5.41570 5.42474 5.50154 5.55374 5.63496 5.70045 5.76961 5.87825 5.95403 5.98179 6.23170 6.26186 6.30531 6.37279 6.59784 6.64559 6.93107 7.54279 7.56356 7.61606 7.89084 8.05440 8.60580 9.17377 9.52819 10.04510 10.74935 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.004247 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.450471 B = 6591.660391 C = 7511.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.601 5.601 4 C 0.112 3.888 5 C 0.417 3.583 6 O -0.581 6.581 7 N -0.562 5.562 8 C -0.300 4.300 9 H 0.101 0.899 10 C 0.024 3.976 11 N -0.901 5.901 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.208 3.792 17 C -0.165 4.165 18 C -0.159 4.159 19 C 0.054 3.946 20 O -0.325 6.325 21 C 0.032 3.968 22 C -0.099 4.099 23 C -0.153 4.153 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.272 0.728 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.126 0.874 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -1.699 -13.593 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.310 5.310 4 C -0.016 4.016 5 C 0.202 3.798 6 O -0.465 6.465 7 N -0.199 5.199 8 C -0.429 4.429 9 H 0.119 0.881 10 C -0.178 4.178 11 N -0.543 5.543 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.106 3.894 17 C -0.187 4.187 18 C -0.178 4.178 19 C 0.009 3.991 20 O -0.239 6.239 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.175 4.175 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.225 0.775 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.828 -1.964 -13.731 17.000 hybrid contribution 0.563 -0.072 0.668 0.877 sum -9.265 -2.035 -13.063 16.144 Atomic orbital electron populations 1.22254 0.96853 1.01515 1.02281 1.21278 0.92925 0.82696 1.02905 1.46005 1.70294 1.12836 1.01907 1.21199 0.95985 0.98298 0.86096 1.20611 0.89828 0.85709 0.83699 1.90535 1.58069 1.42768 1.55158 1.41899 1.12716 1.45559 1.19765 1.19642 0.87906 1.30069 1.05326 0.88108 1.25247 1.00003 0.96430 0.96120 1.69596 1.36349 1.33508 1.14805 0.85935 0.82049 0.78587 0.77771 1.19887 1.20938 1.19945 1.17697 0.94490 0.91390 0.85778 1.20381 1.07907 1.00000 0.90459 1.20863 1.04539 0.94195 0.98229 1.18693 1.02832 0.92040 0.85549 1.86028 1.84112 1.41384 1.12399 1.22905 1.00352 0.97368 0.85741 1.20125 1.02252 1.00194 0.89228 1.20550 1.05012 0.94055 0.97899 0.92511 0.92533 0.92122 0.90796 0.91061 0.89310 0.89394 0.77481 0.91799 0.86018 0.86129 0.88944 0.93145 0.93241 0.85607 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.13 1.76 5.89 -4.04 -0.02 1.74 16 3 N -0.60 -9.96 2.10 -173.07 -0.36 -10.32 16 4 C 0.11 1.94 5.64 -5.19 -0.03 1.91 16 5 C 0.42 9.69 7.85 -10.99 -0.09 9.61 16 6 O -0.58 -15.84 16.01 5.55 0.09 -15.76 16 7 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 8 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 9 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 10 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 11 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 12 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.21 3.51 6.55 -83.70 -0.55 2.96 16 17 C -0.16 -2.47 9.21 -39.40 -0.36 -2.83 16 18 C -0.16 -2.23 9.03 -39.46 -0.36 -2.59 16 19 C 0.05 0.83 6.69 -39.24 -0.26 0.56 16 20 O -0.32 -4.54 10.50 -19.75 -0.21 -4.74 16 21 C 0.03 0.30 9.81 101.05 0.99 1.29 16 22 C -0.10 -1.57 9.98 -39.45 -0.39 -1.97 16 23 C -0.15 -2.60 9.21 -39.39 -0.36 -2.96 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 28 H 0.07 0.97 6.19 -51.93 -0.32 0.64 16 29 H 0.09 1.40 6.20 -51.93 -0.32 1.07 16 30 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.12 1.59 6.13 -52.49 -0.32 1.27 16 34 H 0.12 1.36 6.29 -52.49 -0.33 1.03 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 37 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.13 2.17 6.14 -52.49 -0.32 1.85 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -32.45 329.48 -6.37 -38.81 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.20 Total: 10.39 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.29 Total: -1.72 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.30 Total: -48.04 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.12 Total: -20.50 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.45 -6.37 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.793 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds