Wall clock time and date at job start Tue Mar 31 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46499 * 120.00229 * 90.00338 * 3 2 1 5 5 C 1.50703 * 109.47324 * 89.99695 * 4 3 2 6 6 O 1.21291 * 119.99692 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00224 * 180.02562 * 5 4 3 8 8 C 1.37091 * 119.99993 * 180.02562 * 7 5 4 9 9 H 1.08006 * 120.00231 * 359.97438 * 8 7 5 10 10 C 1.38958 * 120.00093 * 179.97438 * 8 7 5 11 11 N 1.31407 * 119.99498 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00080 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46815 * 59.99911 * 12 10 8 14 14 H 1.48492 * 109.46880 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47161 * 300.00078 * 12 10 8 16 16 C 1.39936 * 119.99869 * 269.99947 * 3 2 1 17 17 C 1.38861 * 120.02194 * 359.73087 * 16 3 2 18 18 C 1.38113 * 119.98103 * 179.74336 * 17 16 3 19 19 C 1.38695 * 120.01711 * 0.50374 * 18 17 16 20 20 O 1.36003 * 119.97935 * 179.74599 * 19 18 17 21 21 C 1.42904 * 117.00239 * 0.02562 * 20 19 18 22 22 C 1.38698 * 120.04393 * 359.77037 * 19 18 17 23 23 C 1.38121 * 120.01574 * 359.97438 * 22 19 18 24 24 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 28 28 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 29 29 H 1.08996 * 109.47662 * 209.99843 * 4 3 2 30 30 H 1.08998 * 109.46853 * 330.00155 * 4 3 2 31 31 H 0.97002 * 119.99719 * 359.97438 * 7 5 4 32 32 H 0.96999 * 119.99728 * 179.97438 * 11 10 8 33 33 H 1.07998 * 120.00515 * 359.97438 * 17 16 3 34 34 H 1.07998 * 119.98935 * 180.23500 * 18 17 16 35 35 H 1.08997 * 109.47277 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.46693 * 300.00192 * 21 20 19 37 37 H 1.09004 * 109.46524 * 59.99706 * 21 20 19 38 38 H 1.08000 * 119.99569 * 179.97438 * 22 19 18 39 39 H 1.07997 * 120.00611 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8350 1.7037 6 8 4.4235 1.1557 1.0213 7 7 4.1388 2.3771 2.8515 8 6 5.4338 2.1621 3.2469 9 1 6.0909 1.5579 2.6389 10 6 5.9009 2.7215 4.4300 11 7 5.1016 3.4570 5.1695 12 14 7.6652 2.4280 4.9692 13 1 8.5926 2.9512 3.9341 14 1 7.9129 3.1285 6.2548 15 1 7.8927 0.9713 5.1467 16 6 2.2516 2.0408 -1.2119 17 6 2.0256 1.3848 -2.4147 18 6 2.2510 2.0384 -3.6103 19 6 2.7129 3.3462 -3.6098 20 8 2.9395 3.9873 -4.7876 21 6 2.6800 3.2536 -5.9862 22 6 2.9443 4.0004 -2.4089 23 6 2.7144 3.3501 -1.2123 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.0956 3.1410 1.1384 30 1 1.5819 1.6877 2.0284 31 1 3.5488 2.9201 3.3973 32 1 5.4275 3.8472 5.9955 33 1 1.6702 0.3649 -2.4152 34 1 2.0717 1.5295 -4.5459 35 1 2.9008 3.8798 -6.8506 36 1 3.3094 2.3641 -6.0110 37 1 1.6312 2.9574 -6.0109 38 1 3.3043 5.0186 -2.4095 39 1 2.8950 3.8595 -0.2773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731212013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:38 Heat of formation + Delta-G solvation = -56.770218 kcal Electronic energy + Delta-G solvation = -21427.786775 eV Core-core repulsion = 18142.280781 eV Total energy + Delta-G solvation = -3285.505994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15700 -40.20567 -38.89286 -36.60142 -35.84678 -33.32976 -32.61507 -31.66854 -30.32976 -28.54261 -27.39884 -26.10632 -24.24250 -22.97492 -21.96320 -20.78130 -19.88315 -19.20157 -17.88529 -17.73716 -17.27801 -16.55113 -16.46284 -16.06207 -15.93563 -15.48561 -15.32917 -14.85309 -14.71898 -14.24719 -14.01368 -13.82194 -13.54702 -13.43855 -13.32824 -13.06183 -12.81585 -12.69424 -12.44904 -12.38669 -12.14399 -12.09667 -11.89181 -11.51330 -11.45946 -10.70463 -10.01892 -10.00198 -9.89887 -8.47916 -7.89416 -5.95607 0.44346 0.73972 1.37977 1.40206 1.50777 2.04256 2.13466 2.32594 2.58089 2.93771 3.19462 3.32949 3.85614 3.97002 4.07507 4.26273 4.32116 4.37892 4.40902 4.47520 4.48716 4.52933 4.54856 4.65113 4.71713 4.77493 4.96573 4.99153 5.11843 5.19522 5.37067 5.39600 5.42710 5.48587 5.75760 5.96453 6.34890 6.51825 6.61232 6.72094 7.12734 7.56159 8.12019 8.69779 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.004247 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.450471 B = 6591.660391 C = 7511.698217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 N -0.607 5.607 4 C 0.123 3.877 5 C 0.418 3.582 6 O -0.625 6.625 7 N -0.571 5.571 8 C -0.334 4.334 9 H 0.074 0.926 10 C -0.010 4.010 11 N -0.918 5.918 12 Si 0.989 3.011 13 H -0.274 1.274 14 H -0.269 1.269 15 H -0.272 1.272 16 C 0.185 3.815 17 C -0.165 4.165 18 C -0.155 4.155 19 C 0.051 3.949 20 O -0.342 6.342 21 C 0.021 3.979 22 C -0.115 4.115 23 C -0.173 4.173 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.362 -2.177 -14.638 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.002 4.002 3 N -0.317 5.317 4 C -0.004 4.004 5 C 0.204 3.796 6 O -0.511 6.511 7 N -0.209 5.209 8 C -0.464 4.464 9 H 0.092 0.908 10 C -0.210 4.210 11 N -0.559 5.559 12 Si 0.813 3.187 13 H -0.200 1.200 14 H -0.193 1.193 15 H -0.197 1.197 16 C 0.084 3.916 17 C -0.187 4.187 18 C -0.174 4.174 19 C 0.005 3.995 20 O -0.257 6.257 21 C -0.073 4.073 22 C -0.134 4.134 23 C -0.196 4.196 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.825 -2.436 -14.791 18.490 hybrid contribution 0.856 0.073 0.846 1.206 sum -9.968 -2.363 -13.945 17.304 Atomic orbital electron populations 1.22131 0.94091 1.02944 1.02381 1.21443 0.95056 0.81374 1.02364 1.46154 1.70507 1.13689 1.01394 1.21122 0.92095 0.99809 0.87417 1.21742 0.91874 0.83678 0.82281 1.90495 1.60063 1.44378 1.56194 1.41957 1.12094 1.46184 1.20633 1.19576 0.89214 1.31399 1.06191 0.90755 1.25982 1.03693 0.95733 0.95577 1.69653 1.37738 1.33481 1.15013 0.85045 0.77362 0.78557 0.77722 1.19988 1.19298 1.19728 1.17955 0.95415 0.91605 0.86588 1.20669 1.07173 1.00801 0.90050 1.21203 1.03189 0.93753 0.99243 1.18834 1.02270 0.92494 0.85901 1.86012 1.84095 1.42495 1.13074 1.23249 1.01523 0.98022 0.84554 1.20276 1.02797 1.00723 0.89631 1.20585 1.06314 0.94705 0.97966 0.92481 0.92302 0.89977 0.92278 0.90728 0.87656 0.86575 0.76899 0.91252 0.84083 0.82990 0.86623 0.92428 0.91729 0.85112 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.12 3.24 5.89 86.38 0.51 3.75 16 3 N -0.61 -19.80 2.10 -701.46 -1.47 -21.27 16 4 C 0.12 4.25 5.64 85.63 0.48 4.73 16 5 C 0.42 19.88 7.85 87.66 0.69 20.57 16 6 O -0.62 -35.16 16.01 -3.07 -0.05 -35.21 16 7 N -0.57 -29.25 5.29 -306.98 -1.62 -30.88 16 8 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 9 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 10 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 11 N -0.92 -49.51 13.05 21.67 0.28 -49.22 16 12 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 C 0.19 6.17 6.55 38.15 0.25 6.42 16 17 C -0.16 -4.66 9.21 22.39 0.21 -4.46 16 18 C -0.15 -4.02 9.03 22.35 0.20 -3.82 16 19 C 0.05 1.49 6.69 22.49 0.15 1.64 16 20 O -0.34 -9.01 10.50 -93.58 -0.98 -9.99 16 21 C 0.02 0.34 9.81 113.37 1.11 1.45 16 22 C -0.12 -3.70 9.98 22.35 0.22 -3.47 16 23 C -0.17 -5.99 9.21 22.39 0.21 -5.78 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.07 1.92 6.19 -2.39 -0.01 1.91 16 29 H 0.11 3.30 6.20 -2.39 -0.01 3.28 16 30 H 0.12 3.34 8.07 -2.39 -0.02 3.32 16 31 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 32 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.14 3.35 6.13 -2.91 -0.02 3.33 16 34 H 0.15 2.89 6.29 -2.91 -0.02 2.87 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 37 H 0.06 0.85 7.66 -2.39 -0.02 0.84 16 38 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.12 4.14 6.14 -2.91 -0.02 4.13 16 Total: -1.00 -71.01 329.48 4.57 -66.45 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.34 Total: 34.44 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.05 Total: 0.32 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -2.81 Total: -101.37 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.03 Total: -45.20 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.01 4.57 -66.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.675 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds