Wall clock time and date at job start Tue Mar 31 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99525 * 2 1 4 4 C 1.50698 * 109.47411 * 66.04032 * 3 2 1 5 5 O 1.21281 * 120.00069 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99762 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99506 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46970 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99958 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00245 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00425 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99725 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46977 * 90.00747 * 12 10 8 14 14 H 1.48506 * 109.47393 * 210.00397 * 12 10 8 15 15 H 1.48494 * 109.47567 * 330.00505 * 12 10 8 16 16 C 1.46896 * 111.00497 * 236.04285 * 2 1 3 17 17 C 1.50700 * 109.47123 * 288.26245 * 16 2 1 18 18 C 1.38165 * 120.03107 * 105.13960 * 17 16 2 19 19 C 1.38237 * 120.05421 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.11517 * 359.97438 * 19 18 17 21 21 C 1.38115 * 120.05511 * 0.02562 * 20 19 18 22 22 C 1.38710 * 120.02439 * 285.09580 * 17 16 2 23 23 O 1.35903 * 120.05493 * 0.04081 * 22 17 16 24 24 H 1.08996 * 109.47002 * 189.56661 * 1 2 3 25 25 H 1.08994 * 109.47774 * 309.57095 * 1 2 3 26 26 H 1.09003 * 109.46965 * 69.57227 * 1 2 3 27 27 H 1.08999 * 109.46897 * 186.04345 * 3 2 1 28 28 H 1.09000 * 109.47206 * 306.04007 * 3 2 1 29 29 H 0.96998 * 120.00272 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.47499 * 300.00518 * 7 6 4 31 31 H 1.09000 * 109.47174 * 60.01002 * 7 6 4 32 32 H 0.97001 * 120.00449 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47046 * 168.25713 * 16 2 1 34 34 H 1.09008 * 109.46780 * 48.26200 * 16 2 1 35 35 H 1.08003 * 119.96642 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.93775 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.97118 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.03271 * 179.72148 * 21 20 19 39 39 H 0.96703 * 113.99949 * 264.89920 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0473 1.2983 5 8 1.0052 1.4455 2.1410 6 7 2.0186 3.3201 1.5235 7 6 1.6694 3.9772 2.7855 8 6 2.2095 5.3841 2.7855 9 1 2.7576 5.7521 1.9308 10 6 2.0039 6.2015 3.8766 11 7 2.4756 7.4291 3.8769 12 14 1.0552 5.5652 5.3547 13 1 1.9980 4.9377 6.3152 14 1 0.3533 6.6945 6.0161 15 1 0.0602 4.5575 4.9079 16 6 1.9955 -0.7660 -1.1375 17 6 1.7599 -2.2362 -0.9052 18 6 0.7642 -2.8953 -1.6003 19 6 0.5481 -4.2440 -1.3880 20 6 1.3276 -4.9372 -0.4802 21 6 2.3242 -4.2830 0.2172 22 6 2.5432 -2.9292 0.0061 23 8 3.5232 -2.2832 0.6910 24 1 -0.3633 -1.0133 0.1708 25 1 -0.3634 0.6546 0.7921 26 1 -0.3633 0.3587 -0.9631 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8310 29 1 2.5239 3.8012 0.8497 30 1 0.5851 4.0046 2.8931 31 1 2.1031 3.4212 3.6167 32 1 2.3306 8.0043 4.6444 33 1 3.0650 -0.5805 -1.2365 34 1 1.4870 -0.4563 -2.0506 35 1 0.1544 -2.3561 -2.3101 36 1 -0.2310 -4.7572 -1.9321 37 1 1.1570 -5.9910 -0.3164 38 1 2.9299 -4.8237 0.9295 39 1 4.3988 -2.3554 0.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731844795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:02 Heat of formation + Delta-G solvation = -42.053574 kcal Electronic energy + Delta-G solvation = -21055.135326 eV Core-core repulsion = 17770.267493 eV Total energy + Delta-G solvation = -3284.867832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13583 -39.06194 -36.77293 -36.50746 -34.18613 -32.33420 -31.86608 -29.99861 -28.90514 -27.16621 -26.75201 -23.29824 -22.75079 -21.78063 -20.91130 -19.76145 -18.39832 -17.28666 -16.37397 -16.12268 -15.89237 -15.82770 -15.27456 -15.15213 -14.47004 -14.28677 -14.10413 -13.95539 -13.54014 -12.96239 -12.63556 -12.60544 -12.37809 -12.22117 -12.11198 -12.02595 -11.54932 -11.35108 -11.30066 -10.96885 -10.69788 -10.51734 -9.94365 -9.46754 -9.11104 -9.06591 -8.74846 -8.71176 -8.19639 -8.04362 -6.19377 -4.21297 1.08612 1.12849 3.28483 3.33196 3.35268 3.38110 3.45110 3.81760 4.12753 4.34230 4.37057 4.59438 4.68721 4.84050 5.01143 5.16063 5.22385 5.25579 5.31210 5.38322 5.42495 5.57228 5.66439 5.71283 5.75086 5.79654 6.15558 6.25669 6.28165 6.35435 6.64492 6.82769 7.03300 7.11244 7.13077 7.29916 7.43885 7.63577 8.18539 8.57025 8.78540 9.03121 9.41427 10.92602 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.003198 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.513493 B = 8753.037109 C = 8862.958124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.510 5.510 3 C 0.037 3.963 4 C 0.501 3.499 5 O -0.538 6.538 6 N -0.709 5.709 7 C 0.222 3.778 8 C -0.542 4.542 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.894 5.894 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.102 3.898 17 C -0.101 4.101 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.154 4.154 22 C 0.135 3.865 23 O -0.481 6.481 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.017 0.983 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.395 0.605 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -22.116 -14.369 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.233 5.233 3 C -0.094 4.094 4 C 0.285 3.715 5 O -0.416 6.416 6 N -0.359 5.359 7 C 0.100 3.900 8 C -0.580 4.580 9 H 0.097 0.903 10 C -0.127 4.127 11 N -0.531 5.531 12 Si 0.703 3.297 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.185 1.185 16 C -0.026 4.026 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.153 4.153 20 C -0.124 4.124 21 C -0.173 4.173 22 C 0.089 3.911 23 O -0.290 6.290 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.035 0.965 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.845 -22.410 -12.806 25.825 hybrid contribution -0.051 0.333 -0.495 0.599 sum -0.896 -22.077 -13.302 25.790 Atomic orbital electron populations 1.22545 0.86576 1.03047 1.00384 1.61534 1.08609 1.11650 1.41510 1.21993 1.01705 0.89551 0.96117 1.20334 0.80409 0.82137 0.88575 1.90633 1.40144 1.64274 1.46560 1.46164 1.56019 1.12507 1.21193 1.19456 0.96080 0.92772 0.81700 1.21105 1.37042 0.95130 1.04756 0.90289 1.24798 0.94970 0.94571 0.98316 1.69880 1.45201 1.06967 1.31061 0.86810 0.81010 0.78927 0.82904 1.19823 1.20952 1.18508 1.20898 1.00603 0.89518 0.91573 1.20091 0.97768 0.95838 0.96511 1.20978 0.96760 0.94573 0.99419 1.21093 1.00214 0.94468 0.99478 1.21005 0.95335 0.99865 0.96207 1.21498 1.00501 0.94076 1.01199 1.18288 0.91923 0.89523 0.91318 1.84997 1.18700 1.74887 1.50393 0.91742 0.89288 0.96484 0.88212 0.92437 0.77184 0.95866 0.96175 0.92291 0.90008 0.94042 0.85957 0.85991 0.85910 0.85552 0.76162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.03 60.06 0.54 0.87 16 2 N -0.51 -7.40 4.45 -245.83 -1.09 -8.49 16 3 C 0.04 0.54 5.44 -4.97 -0.03 0.51 16 4 C 0.50 9.81 7.46 -10.98 -0.08 9.73 16 5 O -0.54 -12.69 14.39 5.56 0.08 -12.61 16 6 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16 7 C 0.22 5.57 4.50 -5.19 -0.02 5.55 16 8 C -0.54 -15.05 9.83 -34.44 -0.34 -15.39 16 9 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 11 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 12 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 16 C 0.10 1.12 4.72 -4.98 -0.02 1.10 16 17 C -0.10 -1.12 4.69 -104.47 -0.49 -1.61 16 18 C -0.10 -0.95 9.41 -39.61 -0.37 -1.32 16 19 C -0.13 -1.17 10.04 -39.56 -0.40 -1.56 16 20 C -0.11 -0.93 10.04 -39.61 -0.40 -1.33 16 21 C -0.15 -1.55 9.99 -39.43 -0.39 -1.95 16 22 C 0.13 1.55 6.68 -39.21 -0.26 1.29 16 23 O -0.48 -5.64 12.84 -19.44 -0.25 -5.89 16 24 H 0.06 0.92 7.43 -51.93 -0.39 0.53 16 25 H 0.09 1.57 5.79 -51.93 -0.30 1.26 16 26 H 0.02 0.21 8.00 -51.93 -0.42 -0.21 16 27 H 0.10 1.22 7.86 -51.93 -0.41 0.81 16 28 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 0.79 7.68 -51.93 -0.40 0.40 16 34 H 0.04 0.40 7.77 -51.92 -0.40 0.00 16 35 H 0.12 0.97 8.00 -52.48 -0.42 0.55 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.38 2.48 9.06 45.56 0.41 2.89 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -35.09 329.83 -7.59 -42.68 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.69 Total: 5.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.36 Total: -2.01 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.66 Total: -49.41 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.17 Total: -18.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.09 -7.59 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731844795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.624 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds