Wall clock time and date at job start Tue Mar 31 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99525 * 2 1 4 4 C 1.50698 * 109.47411 * 66.04032 * 3 2 1 5 5 O 1.21281 * 120.00069 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99762 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99506 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46970 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99958 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00245 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00425 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99725 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46977 * 90.00747 * 12 10 8 14 14 H 1.48506 * 109.47393 * 210.00397 * 12 10 8 15 15 H 1.48494 * 109.47567 * 330.00505 * 12 10 8 16 16 C 1.46896 * 111.00497 * 236.04285 * 2 1 3 17 17 C 1.50700 * 109.47123 * 288.26245 * 16 2 1 18 18 C 1.38165 * 120.03107 * 105.13960 * 17 16 2 19 19 C 1.38237 * 120.05421 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.11517 * 359.97438 * 19 18 17 21 21 C 1.38115 * 120.05511 * 0.02562 * 20 19 18 22 22 C 1.38710 * 120.02439 * 285.09580 * 17 16 2 23 23 O 1.35903 * 120.05493 * 0.04081 * 22 17 16 24 24 H 1.08996 * 109.47002 * 189.56661 * 1 2 3 25 25 H 1.08994 * 109.47774 * 309.57095 * 1 2 3 26 26 H 1.09003 * 109.46965 * 69.57227 * 1 2 3 27 27 H 1.08999 * 109.46897 * 186.04345 * 3 2 1 28 28 H 1.09000 * 109.47206 * 306.04007 * 3 2 1 29 29 H 0.96998 * 120.00272 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.47499 * 300.00518 * 7 6 4 31 31 H 1.09000 * 109.47174 * 60.01002 * 7 6 4 32 32 H 0.97001 * 120.00449 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47046 * 168.25713 * 16 2 1 34 34 H 1.09008 * 109.46780 * 48.26200 * 16 2 1 35 35 H 1.08003 * 119.96642 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.93775 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.97118 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.03271 * 179.72148 * 21 20 19 39 39 H 0.96703 * 113.99949 * 264.89920 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0473 1.2983 5 8 1.0052 1.4455 2.1410 6 7 2.0186 3.3201 1.5235 7 6 1.6694 3.9772 2.7855 8 6 2.2095 5.3841 2.7855 9 1 2.7576 5.7521 1.9308 10 6 2.0039 6.2015 3.8766 11 7 2.4756 7.4291 3.8769 12 14 1.0552 5.5652 5.3547 13 1 1.9980 4.9377 6.3152 14 1 0.3533 6.6945 6.0161 15 1 0.0602 4.5575 4.9079 16 6 1.9955 -0.7660 -1.1375 17 6 1.7599 -2.2362 -0.9052 18 6 0.7642 -2.8953 -1.6003 19 6 0.5481 -4.2440 -1.3880 20 6 1.3276 -4.9372 -0.4802 21 6 2.3242 -4.2830 0.2172 22 6 2.5432 -2.9292 0.0061 23 8 3.5232 -2.2832 0.6910 24 1 -0.3633 -1.0133 0.1708 25 1 -0.3634 0.6546 0.7921 26 1 -0.3633 0.3587 -0.9631 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8310 29 1 2.5239 3.8012 0.8497 30 1 0.5851 4.0046 2.8931 31 1 2.1031 3.4212 3.6167 32 1 2.3306 8.0043 4.6444 33 1 3.0650 -0.5805 -1.2365 34 1 1.4870 -0.4563 -2.0506 35 1 0.1544 -2.3561 -2.3101 36 1 -0.2310 -4.7572 -1.9321 37 1 1.1570 -5.9910 -0.3164 38 1 2.9299 -4.8237 0.9295 39 1 4.3988 -2.3554 0.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731844795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:00 Heat of formation + Delta-G solvation = -70.113368 kcal Electronic energy + Delta-G solvation = -21056.352090 eV Core-core repulsion = 17770.267493 eV Total energy + Delta-G solvation = -3286.084596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.00847 -40.45766 -37.79149 -37.38983 -36.05529 -34.39786 -32.70386 -30.78223 -30.51489 -28.55974 -27.79221 -24.65542 -23.48233 -23.38069 -21.80526 -21.37261 -19.23301 -19.06135 -17.80118 -17.27930 -17.00596 -16.84162 -16.54144 -16.29187 -15.85020 -15.68584 -15.44786 -15.02559 -14.69158 -14.48274 -14.25482 -13.92749 -13.69754 -13.16241 -13.08907 -13.00226 -12.81022 -12.77124 -12.62727 -12.45823 -12.08561 -11.94282 -11.65491 -11.27370 -10.92246 -10.68419 -9.88595 -9.79097 -9.43748 -9.18501 -8.40606 -6.47076 0.37188 0.42832 1.31732 1.33938 1.46765 1.79384 2.27230 2.33495 2.77248 2.94840 3.22223 3.44091 3.83821 3.96089 3.98411 4.22376 4.25617 4.34469 4.38843 4.48030 4.57183 4.63724 4.69329 4.75470 4.80583 5.03531 5.04851 5.08496 5.12256 5.26731 5.47546 5.56752 5.59233 5.61438 5.94412 6.01055 6.11576 6.15825 6.54099 6.90591 7.00329 7.16547 7.48791 8.74108 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.003198 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.513493 B = 8753.037109 C = 8862.958124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.534 5.534 3 C 0.050 3.950 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.708 5.708 7 C 0.234 3.766 8 C -0.545 4.545 9 H 0.061 0.939 10 C 0.027 3.973 11 N -0.931 5.931 12 Si 0.936 3.064 13 H -0.266 1.266 14 H -0.272 1.272 15 H -0.263 1.263 16 C 0.105 3.895 17 C -0.119 4.119 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.107 4.107 21 C -0.169 4.169 22 C 0.115 3.885 23 O -0.504 6.504 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.409 0.591 30 H 0.010 0.990 31 H 0.007 0.993 32 H 0.272 0.728 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -23.694 -15.721 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.081 4.081 4 C 0.285 3.715 5 O -0.461 6.461 6 N -0.359 5.359 7 C 0.110 3.890 8 C -0.583 4.583 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.570 5.570 12 Si 0.760 3.240 13 H -0.191 1.191 14 H -0.197 1.197 15 H -0.187 1.187 16 C -0.022 4.022 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.156 4.156 20 C -0.125 4.125 21 C -0.188 4.188 22 C 0.070 3.930 23 O -0.315 6.315 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.244 0.756 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.184 -23.996 -14.203 27.910 hybrid contribution 0.096 0.763 -0.141 0.781 sum -1.088 -23.234 -14.344 27.326 Atomic orbital electron populations 1.22369 0.87087 1.02077 1.00230 1.61449 1.08458 1.11875 1.44035 1.21938 1.03364 0.89539 0.93238 1.21318 0.78883 0.81258 0.90011 1.90618 1.41874 1.65085 1.48559 1.46015 1.56538 1.13257 1.20101 1.19032 0.94842 0.91499 0.83586 1.21300 1.36475 0.96331 1.04170 0.92066 1.25576 0.95900 0.94747 1.01101 1.69974 1.46614 1.08129 1.32244 0.85877 0.79788 0.78577 0.79751 1.19128 1.19656 1.18745 1.20944 1.01372 0.88991 0.90848 1.20214 0.98558 0.95998 0.97282 1.21238 0.96382 0.95150 0.99375 1.21440 1.00494 0.94357 0.99281 1.21340 0.94580 1.01054 0.95575 1.21696 1.01308 0.93933 1.01840 1.18552 0.92358 0.90222 0.91909 1.84933 1.20020 1.75212 1.51373 0.91996 0.92878 0.94125 0.85647 0.89514 0.75570 0.97246 0.97536 0.91834 0.88823 0.92103 0.84351 0.83570 0.83640 0.84924 0.74127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.03 127.69 1.15 2.00 16 2 N -0.53 -14.52 4.45 -931.66 -4.14 -18.66 16 3 C 0.05 1.30 5.44 85.56 0.47 1.77 16 4 C 0.50 19.13 7.46 87.66 0.65 19.79 16 5 O -0.58 -27.62 14.39 -3.03 -0.04 -27.66 16 6 N -0.71 -28.77 5.55 -466.78 -2.59 -31.36 16 7 C 0.23 11.82 4.50 85.63 0.38 12.20 16 8 C -0.54 -30.49 9.83 25.60 0.25 -30.24 16 9 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 10 C 0.03 1.55 5.47 84.65 0.46 2.02 16 11 N -0.93 -56.07 13.96 21.45 0.30 -55.78 16 12 Si 0.94 45.10 27.47 68.60 1.88 46.99 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 16 C 0.10 2.04 4.72 85.56 0.40 2.45 16 17 C -0.12 -2.44 4.69 -19.77 -0.09 -2.53 16 18 C -0.10 -1.73 9.41 22.25 0.21 -1.52 16 19 C -0.14 -2.04 10.04 22.28 0.22 -1.82 16 20 C -0.11 -1.67 10.04 22.25 0.22 -1.45 16 21 C -0.17 -3.23 9.99 22.36 0.22 -3.01 16 22 C 0.11 2.53 6.68 22.51 0.15 2.68 16 23 O -0.50 -11.50 12.84 -92.46 -1.19 -12.69 16 24 H 0.06 1.71 7.43 -2.39 -0.02 1.69 16 25 H 0.05 1.87 5.79 -2.39 -0.01 1.85 16 26 H 0.04 0.91 8.00 -2.39 -0.02 0.89 16 27 H 0.13 2.67 7.86 -2.39 -0.02 2.65 16 28 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 30 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 31 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.09 1.56 7.68 -2.39 -0.02 1.54 16 34 H 0.06 0.95 7.77 -2.38 -0.02 0.93 16 35 H 0.14 1.78 8.00 -2.91 -0.02 1.76 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.40 4.94 9.06 -74.06 -0.67 4.27 16 Total: -1.00 -76.17 329.83 -1.49 -77.66 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.43 Total: 19.18 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 4.71 Total: 2.33 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -6.43 Total: -105.80 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.23 Total: -40.35 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -76.17 -1.49 -77.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731844795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.548 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds