Wall clock time and date at job start Tue Mar 31 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46549 * 2 1 4 4 C 1.37092 * 120.00012 * 263.54883 * 3 2 1 5 5 H 1.07999 * 120.00236 * 188.39127 * 4 3 2 6 6 C 1.38952 * 120.00168 * 8.40242 * 4 3 2 7 7 N 1.31417 * 119.99928 * 25.15681 * 6 4 3 8 8 Si 1.86794 * 120.00059 * 205.16012 * 6 4 3 9 9 H 1.48507 * 109.47164 * 84.98379 * 8 6 4 10 10 H 1.48506 * 109.47312 * 204.98212 * 8 6 4 11 11 H 1.48504 * 109.47308 * 324.98342 * 8 6 4 12 12 C 1.34775 * 119.99953 * 83.56002 * 3 2 1 13 13 O 1.21291 * 120.00463 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00234 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47636 * 180.02562 * 14 12 3 16 16 C 1.53002 * 109.47432 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.46835 * 179.97438 * 16 15 14 18 18 C 1.35764 * 119.62258 * 90.00419 * 17 16 15 19 19 C 1.35350 * 120.70060 * 180.27383 * 18 17 16 20 20 C 1.40198 * 119.94729 * 359.43237 * 19 18 17 21 21 C 1.36405 * 119.26280 * 0.57558 * 20 19 18 22 22 C 1.34660 * 119.62509 * 270.01678 * 17 16 15 23 23 O 1.22056 * 119.98224 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47868 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47413 * 60.00572 * 1 2 3 27 27 H 1.08993 * 109.47366 * 240.00244 * 2 1 3 28 28 H 1.08996 * 109.46995 * 119.99968 * 2 1 3 29 29 H 0.96998 * 119.99806 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46997 * 59.99622 * 14 12 3 31 31 H 1.09007 * 109.46895 * 300.00576 * 14 12 3 32 32 H 1.08996 * 109.46970 * 59.99616 * 15 14 12 33 33 H 1.09005 * 109.46746 * 300.00054 * 15 14 12 34 34 H 1.09001 * 109.47063 * 59.99472 * 16 15 14 35 35 H 1.09004 * 109.46556 * 300.00118 * 16 15 14 36 36 H 1.08000 * 119.65300 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.02391 * 179.69660 * 19 18 17 38 38 H 1.08001 * 120.36995 * 180.32074 * 20 19 18 39 39 H 1.08001 * 120.34468 * 179.73560 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3724 1.9831 -1.1797 5 1 2.8578 2.9478 -1.1694 6 6 2.1067 1.3521 -2.3888 7 7 1.1282 0.4789 -2.4732 8 14 3.1403 1.7449 -3.8943 9 1 4.3646 0.9043 -3.8873 10 1 2.3537 1.4633 -5.1221 11 1 3.5245 3.1791 -3.8706 12 6 2.1193 2.0603 1.1598 13 8 2.5239 3.2037 1.1600 14 6 1.7297 1.3989 2.4566 15 6 1.9375 2.3799 3.6122 16 6 1.5413 1.7085 4.9288 17 7 1.7409 2.6477 6.0352 18 6 0.7270 3.4694 6.4091 19 6 0.8893 4.3493 7.4247 20 6 2.1110 4.4098 8.1098 21 6 3.1286 3.5835 7.7324 22 6 2.9281 2.6863 6.6696 23 8 3.8303 1.9416 6.3214 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9430 0.0381 -3.3171 30 1 2.3482 0.5152 2.6140 31 1 0.6808 1.1052 2.4139 32 1 1.3187 3.2632 3.4546 33 1 2.9863 2.6738 3.6550 34 1 2.1597 0.8249 5.0865 35 1 0.4924 1.4149 4.8855 36 1 -0.2177 3.4240 5.8875 37 1 0.0769 5.0013 7.7099 38 1 2.2463 5.1056 8.9246 39 1 4.0785 3.6184 8.2453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735004547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:34 Heat of formation + Delta-G solvation = -29.956552 kcal Electronic energy + Delta-G solvation = -21402.204166 eV Core-core repulsion = 18117.860900 eV Total energy + Delta-G solvation = -3284.343266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.34072 -38.65012 -36.89505 -35.63409 -34.93956 -32.53586 -31.65104 -29.92528 -29.41261 -27.41928 -24.91858 -23.90981 -23.02896 -22.17141 -21.41421 -18.76423 -17.57195 -17.33369 -16.82191 -16.37656 -16.07912 -15.47240 -15.09582 -14.81551 -14.37006 -14.19526 -14.03264 -13.46849 -12.81004 -12.74572 -12.64638 -12.26835 -12.17907 -11.99483 -11.78818 -11.61507 -11.28576 -11.17813 -11.00934 -10.78795 -10.50713 -10.33101 -10.13206 -10.09354 -9.90736 -9.82063 -8.89453 -8.35654 -8.03312 -7.75242 -6.35952 -3.76683 0.75190 1.80699 2.61505 3.16726 3.26711 3.31642 3.61270 3.90155 4.13428 4.45719 4.56522 4.77903 4.79271 5.04464 5.08296 5.12954 5.21870 5.24607 5.37025 5.62463 5.74099 5.83874 5.90236 5.95418 6.02435 6.15078 6.25255 6.37496 6.42936 6.54572 6.60877 6.64697 6.74995 7.05731 7.25689 7.46686 7.72705 8.03822 8.10801 8.52230 9.19899 9.46472 10.01901 10.64969 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033718 B = 0.003492 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.210354 B = 8016.290569 C = 8267.552249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.120 3.880 3 N -0.442 5.442 4 C -0.307 4.307 5 H 0.103 0.897 6 C 0.030 3.970 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.441 3.559 13 O -0.595 6.595 14 C -0.126 4.126 15 C -0.111 4.111 16 C 0.087 3.913 17 N -0.491 5.491 18 C 0.142 3.858 19 C -0.243 4.243 20 C -0.018 4.018 21 C -0.248 4.248 22 C 0.510 3.490 23 O -0.550 6.550 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 1.223 16.571 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.004 4.004 3 N -0.160 5.160 4 C -0.435 4.435 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.230 3.770 13 O -0.481 6.481 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.034 4.034 17 N -0.201 5.201 18 C 0.013 3.987 19 C -0.267 4.267 20 C -0.040 4.040 21 C -0.270 4.270 22 C 0.312 3.688 23 O -0.432 6.432 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.564 1.121 16.129 16.799 hybrid contribution 0.206 0.070 -0.786 0.816 sum -4.358 1.191 15.342 15.994 Atomic orbital electron populations 1.22118 0.96740 0.99779 1.01951 1.21445 0.94444 0.83742 1.00781 1.43826 1.55399 1.11237 1.05575 1.19730 1.35999 1.05515 0.82232 0.87887 1.25173 0.96008 0.97199 0.98887 1.70109 1.25010 1.28908 1.26662 0.86071 0.80005 0.79203 0.80239 1.20378 1.21153 1.19520 1.19859 0.85243 0.86908 0.85014 1.90509 1.52060 1.18592 1.86948 1.21460 1.02412 0.98946 0.93846 1.21572 1.03775 0.98638 0.90943 1.22199 1.03063 0.92866 0.85274 1.45651 1.12470 1.32386 1.29565 1.22030 0.92663 0.89236 0.94735 1.20618 1.00076 1.04783 1.01177 1.21408 0.91950 0.94525 0.96086 1.22126 1.01983 1.01415 1.01447 1.17183 0.81562 0.85801 0.84261 1.90973 1.40363 1.44035 1.67833 0.94380 0.95789 0.89004 0.88084 0.94946 0.92322 0.90348 0.90095 0.91045 0.90557 0.88151 0.89098 0.82102 0.83937 0.85052 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.64 37.16 0.36 -2.62 16 2 C 0.12 2.62 5.07 -4.04 -0.02 2.60 16 3 N -0.44 -11.23 2.64 -114.82 -0.30 -11.53 16 4 C -0.31 -8.55 9.43 -14.93 -0.14 -8.69 16 5 H 0.10 3.06 7.31 -52.49 -0.38 2.68 16 6 C 0.03 0.78 4.90 -17.46 -0.09 0.69 16 7 N -0.87 -22.00 8.65 55.50 0.48 -21.52 16 8 Si 0.92 20.56 29.62 -169.99 -5.04 15.53 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.44 10.76 7.58 -10.99 -0.08 10.68 16 13 O -0.60 -16.71 15.57 5.55 0.09 -16.62 16 14 C -0.13 -2.25 4.31 -27.88 -0.12 -2.37 16 15 C -0.11 -1.82 4.83 -26.73 -0.13 -1.94 16 16 C 0.09 1.09 5.33 -4.04 -0.02 1.07 16 17 N -0.49 -6.17 2.58 -119.77 -0.31 -6.48 16 18 C 0.14 1.29 10.28 -16.84 -0.17 1.12 16 19 C -0.24 -1.94 10.01 -39.88 -0.40 -2.34 16 20 C -0.02 -0.16 10.10 -39.51 -0.40 -0.56 16 21 C -0.25 -2.94 9.99 -39.38 -0.39 -3.33 16 22 C 0.51 7.72 7.41 -15.45 -0.11 7.60 16 23 O -0.55 -10.55 16.64 4.87 0.08 -10.47 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.02 0.43 6.45 -51.93 -0.34 0.10 16 26 H 0.09 2.15 6.38 -51.93 -0.33 1.82 16 27 H 0.10 2.41 5.83 -51.93 -0.30 2.11 16 28 H 0.03 0.62 6.71 -51.93 -0.35 0.27 16 29 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 30 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.08 1.28 6.41 -51.93 -0.33 0.94 16 32 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 34 H 0.10 1.35 7.39 -51.93 -0.38 0.97 16 35 H 0.09 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.16 0.96 8.04 -52.49 -0.42 0.53 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -33.85 322.66 -7.17 -41.02 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.31 Total: 3.30 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.72 Total: 1.91 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.13 Total: -39.53 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: 0.17 Total: -27.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.04 Total: 15.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.85 -7.17 -41.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735004547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.066 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds