Wall clock time and date at job start Tue Mar 31 2020 00:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46549 * 2 1 4 4 C 1.37092 * 120.00012 * 263.54883 * 3 2 1 5 5 H 1.07999 * 120.00236 * 188.39127 * 4 3 2 6 6 C 1.38952 * 120.00168 * 8.40242 * 4 3 2 7 7 N 1.31417 * 119.99928 * 25.15681 * 6 4 3 8 8 Si 1.86794 * 120.00059 * 205.16012 * 6 4 3 9 9 H 1.48507 * 109.47164 * 84.98379 * 8 6 4 10 10 H 1.48506 * 109.47312 * 204.98212 * 8 6 4 11 11 H 1.48504 * 109.47308 * 324.98342 * 8 6 4 12 12 C 1.34775 * 119.99953 * 83.56002 * 3 2 1 13 13 O 1.21291 * 120.00463 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00234 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47636 * 180.02562 * 14 12 3 16 16 C 1.53002 * 109.47432 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.46835 * 179.97438 * 16 15 14 18 18 C 1.35764 * 119.62258 * 90.00419 * 17 16 15 19 19 C 1.35350 * 120.70060 * 180.27383 * 18 17 16 20 20 C 1.40198 * 119.94729 * 359.43237 * 19 18 17 21 21 C 1.36405 * 119.26280 * 0.57558 * 20 19 18 22 22 C 1.34660 * 119.62509 * 270.01678 * 17 16 15 23 23 O 1.22056 * 119.98224 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47868 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47413 * 60.00572 * 1 2 3 27 27 H 1.08993 * 109.47366 * 240.00244 * 2 1 3 28 28 H 1.08996 * 109.46995 * 119.99968 * 2 1 3 29 29 H 0.96998 * 119.99806 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46997 * 59.99622 * 14 12 3 31 31 H 1.09007 * 109.46895 * 300.00576 * 14 12 3 32 32 H 1.08996 * 109.46970 * 59.99616 * 15 14 12 33 33 H 1.09005 * 109.46746 * 300.00054 * 15 14 12 34 34 H 1.09001 * 109.47063 * 59.99472 * 16 15 14 35 35 H 1.09004 * 109.46556 * 300.00118 * 16 15 14 36 36 H 1.08000 * 119.65300 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.02391 * 179.69660 * 19 18 17 38 38 H 1.08001 * 120.36995 * 180.32074 * 20 19 18 39 39 H 1.08001 * 120.34468 * 179.73560 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3724 1.9831 -1.1797 5 1 2.8578 2.9478 -1.1694 6 6 2.1067 1.3521 -2.3888 7 7 1.1282 0.4789 -2.4732 8 14 3.1403 1.7449 -3.8943 9 1 4.3646 0.9043 -3.8873 10 1 2.3537 1.4633 -5.1221 11 1 3.5245 3.1791 -3.8706 12 6 2.1193 2.0603 1.1598 13 8 2.5239 3.2037 1.1600 14 6 1.7297 1.3989 2.4566 15 6 1.9375 2.3799 3.6122 16 6 1.5413 1.7085 4.9288 17 7 1.7409 2.6477 6.0352 18 6 0.7270 3.4694 6.4091 19 6 0.8893 4.3493 7.4247 20 6 2.1110 4.4098 8.1098 21 6 3.1286 3.5835 7.7324 22 6 2.9281 2.6863 6.6696 23 8 3.8303 1.9416 6.3214 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9430 0.0381 -3.3171 30 1 2.3482 0.5152 2.6140 31 1 0.6808 1.1052 2.4139 32 1 1.3187 3.2632 3.4546 33 1 2.9863 2.6738 3.6550 34 1 2.1597 0.8249 5.0865 35 1 0.4924 1.4149 4.8855 36 1 -0.2177 3.4240 5.8875 37 1 0.0769 5.0013 7.7099 38 1 2.2463 5.1056 8.9246 39 1 4.0785 3.6184 8.2453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735004547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:33 Heat of formation + Delta-G solvation = -51.653387 kcal Electronic energy + Delta-G solvation = -21403.145011 eV Core-core repulsion = 18117.860900 eV Total energy + Delta-G solvation = -3285.284112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27567 -40.50177 -37.94692 -37.18710 -36.34253 -34.05159 -33.35441 -31.18340 -30.75925 -28.76303 -26.63838 -24.85262 -24.24782 -23.75054 -22.60385 -20.51867 -18.83505 -18.50087 -18.25436 -17.80661 -17.22362 -16.63011 -16.58991 -16.34623 -15.94987 -15.43690 -15.17330 -14.93085 -14.52797 -14.35689 -13.86527 -13.77186 -13.32977 -13.21605 -12.97879 -12.92566 -12.76412 -12.66336 -12.56271 -12.48213 -12.14240 -12.01452 -11.84683 -11.53316 -11.04222 -10.96121 -10.82273 -10.31319 -9.70672 -8.92949 -8.34946 -5.84045 -0.02963 0.96263 1.34733 1.41461 1.51137 1.70994 2.03608 2.27977 2.72303 3.03915 3.11764 3.69351 3.81654 3.84354 4.00764 4.07759 4.19413 4.30654 4.35816 4.40794 4.46113 4.56798 4.59971 4.73968 4.89872 4.92856 5.07934 5.11833 5.18868 5.22398 5.27162 5.42541 5.43580 5.51503 5.71840 5.95051 6.09055 6.15884 6.54824 7.03281 7.20021 7.52917 8.09126 8.63149 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033718 B = 0.003492 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.210354 B = 8016.290569 C = 8267.552249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 N -0.453 5.453 4 C -0.355 4.355 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.976 3.024 9 H -0.272 1.272 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.423 3.577 13 O -0.647 6.647 14 C -0.111 4.111 15 C -0.099 4.099 16 C 0.095 3.905 17 N -0.494 5.494 18 C 0.130 3.870 19 C -0.234 4.234 20 C 0.007 3.993 21 C -0.287 4.287 22 C 0.488 3.512 23 O -0.616 6.616 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.274 0.726 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.087 0.913 35 H 0.140 0.860 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 0.848 17.735 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.005 4.005 3 N -0.171 5.171 4 C -0.482 4.482 5 H 0.084 0.916 6 C -0.195 4.195 7 N -0.502 5.502 8 Si 0.801 3.199 9 H -0.197 1.197 10 H -0.194 1.194 11 H -0.207 1.207 12 C 0.214 3.786 13 O -0.536 6.536 14 C -0.151 4.151 15 C -0.138 4.138 16 C -0.026 4.026 17 N -0.202 5.202 18 C 0.003 3.997 19 C -0.256 4.256 20 C -0.015 4.015 21 C -0.309 4.309 22 C 0.293 3.707 23 O -0.504 6.504 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.217 0.783 37 H 0.201 0.799 38 H 0.186 0.814 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.426 0.726 17.301 18.841 hybrid contribution 0.968 0.270 -1.152 1.529 sum -6.458 0.996 16.149 17.421 Atomic orbital electron populations 1.21960 0.95061 1.01377 1.01131 1.21562 0.95794 0.81906 1.01262 1.44080 1.55298 1.12475 1.05247 1.19536 1.38753 1.05581 0.84375 0.91560 1.25780 0.96318 0.96890 1.00559 1.70177 1.24302 1.28156 1.27569 0.85224 0.78803 0.78310 0.77606 1.19740 1.19421 1.20701 1.21005 0.84212 0.86653 0.86765 1.90465 1.54130 1.21091 1.87947 1.21401 1.04400 0.98954 0.90377 1.21403 1.00881 0.98618 0.92860 1.22120 1.05446 0.91876 0.83133 1.45642 1.12632 1.32878 1.29092 1.22827 0.93011 0.88507 0.95354 1.21212 1.00549 1.04064 0.99761 1.21886 0.90981 0.92815 0.95793 1.22123 1.03565 1.03115 1.02093 1.17747 0.81789 0.86010 0.85166 1.90916 1.42511 1.46884 1.70073 0.91453 0.93861 0.92518 0.90340 0.91664 0.91597 0.88825 0.86702 0.91471 0.95179 0.89442 0.84223 0.78252 0.79903 0.81367 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.64 71.98 0.69 -4.51 16 2 C 0.12 5.02 5.07 86.38 0.44 5.45 16 3 N -0.45 -23.43 2.64 -635.55 -1.68 -25.11 16 4 C -0.35 -20.49 9.43 84.04 0.79 -19.70 16 5 H 0.07 4.22 7.31 -2.91 -0.02 4.20 16 6 C 0.01 0.42 4.90 84.93 0.42 0.83 16 7 N -0.86 -43.42 8.65 21.66 0.19 -43.23 16 8 Si 0.98 42.51 29.62 68.60 2.03 44.54 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.42 21.12 7.58 87.66 0.66 21.78 16 13 O -0.65 -38.26 15.57 -3.06 -0.05 -38.31 16 14 C -0.11 -3.85 4.31 29.85 0.13 -3.72 16 15 C -0.10 -3.24 4.83 30.59 0.15 -3.09 16 16 C 0.10 2.25 5.33 86.38 0.46 2.71 16 17 N -0.49 -11.86 2.58 -650.98 -1.68 -13.54 16 18 C 0.13 1.90 10.28 83.42 0.86 2.76 16 19 C -0.23 -2.71 10.01 22.08 0.22 -2.49 16 20 C 0.01 0.10 10.10 22.32 0.23 0.33 16 21 C -0.29 -6.85 9.99 22.40 0.22 -6.63 16 22 C 0.49 15.28 7.41 84.82 0.63 15.91 16 23 O -0.62 -25.48 16.64 -5.50 -0.09 -25.57 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.04 1.44 6.45 -2.39 -0.02 1.43 16 26 H 0.06 2.57 6.38 -2.39 -0.02 2.56 16 27 H 0.08 3.70 5.83 -2.39 -0.01 3.69 16 28 H 0.07 2.33 6.71 -2.39 -0.02 2.32 16 29 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.09 2.98 7.42 -2.39 -0.02 2.96 16 31 H 0.11 3.21 6.41 -2.38 -0.02 3.20 16 32 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 33 H 0.03 1.24 8.10 -2.38 -0.02 1.23 16 34 H 0.09 2.33 7.39 -2.39 -0.02 2.31 16 35 H 0.14 1.92 8.01 -2.38 -0.02 1.90 16 36 H 0.20 1.29 8.04 -2.91 -0.02 1.27 16 37 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -81.85 322.66 5.66 -76.18 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.05 Total: 15.41 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.90 Total: 9.63 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.17 Total: -81.89 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -0.14 Total: -63.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -81.85 5.66 -76.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735004547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.530 kcal (2) G-P(sol) polarization free energy of solvation -81.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds