Wall clock time and date at job start Tue Mar 31 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28474 * 124.87769 * 2 1 4 4 C 1.31855 * 110.06060 * 180.14634 * 3 2 1 5 5 C 1.47586 * 126.52274 * 179.85908 * 4 3 2 6 6 O 1.21493 * 120.00179 * 179.68741 * 5 4 3 7 7 O 1.34732 * 119.99737 * 359.40745 * 5 4 3 8 8 C 1.45202 * 116.99693 * 180.27280 * 7 5 4 9 9 C 1.53001 * 109.47151 * 180.02562 * 8 7 5 10 10 C 1.52990 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47212 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00027 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00140 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99996 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47225 * 90.00448 * 15 13 11 17 17 H 1.48508 * 109.46787 * 210.00065 * 15 13 11 18 18 H 1.48499 * 109.47391 * 330.00052 * 15 13 11 19 19 C 1.41546 * 106.95548 * 359.59283 * 4 3 2 20 20 C 1.35046 * 124.88471 * 179.69121 * 2 1 3 21 21 C 1.50703 * 126.37612 * 0.02562 * 20 2 1 22 22 C 1.53004 * 117.50153 * 213.72572 * 21 20 2 23 23 C 1.52997 * 117.49861 * 145.06563 * 21 20 2 24 24 H 1.08994 * 109.47179 * 270.30698 * 1 2 3 25 25 H 1.09003 * 109.47420 * 30.31274 * 1 2 3 26 26 H 1.09004 * 109.47183 * 150.31236 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00508 * 8 7 5 28 28 H 1.09004 * 109.46770 * 60.00912 * 8 7 5 29 29 H 1.08998 * 109.47123 * 300.00640 * 9 8 7 30 30 H 1.09002 * 109.47078 * 60.00027 * 9 8 7 31 31 H 1.08998 * 109.47401 * 300.00262 * 10 9 8 32 32 H 1.09004 * 109.46882 * 60.00594 * 10 9 8 33 33 H 0.96994 * 120.00196 * 179.97438 * 14 13 11 34 34 H 1.07998 * 127.25307 * 180.27378 * 19 4 3 35 35 H 1.09005 * 115.55112 * 359.39887 * 21 20 2 36 36 H 1.09002 * 117.49172 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.50052 * 145.01964 * 22 21 20 38 38 H 1.09000 * 117.50353 * 214.98104 * 23 21 20 39 39 H 1.09002 * 117.50113 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1996 1.0540 0.0000 4 6 3.4743 0.7168 -0.0032 5 6 4.6267 1.6387 -0.0071 6 8 5.7584 1.1967 -0.0041 7 8 4.4238 2.9706 -0.0199 8 6 5.6035 3.8171 -0.0292 9 6 5.1770 5.2864 -0.0425 10 6 6.4200 6.1782 -0.0530 11 6 5.9998 7.6255 -0.0653 12 1 4.9511 7.8833 -0.0653 13 6 6.9543 8.6203 -0.0768 14 7 6.5876 9.8833 -0.0881 15 14 8.7683 8.1744 -0.0762 16 1 9.2462 8.0430 -1.4760 17 1 9.5398 9.2404 0.6122 18 1 8.9610 6.8855 0.6358 19 6 3.5271 -0.6977 0.0043 20 6 2.2373 -1.1078 0.0060 21 6 1.7531 -2.5349 0.0131 22 6 2.5948 -3.5627 0.7722 23 6 2.5801 -3.5653 -0.7584 24 1 -0.3633 0.0055 1.0276 25 1 -0.3634 0.8872 -0.5187 26 1 -0.3634 -0.8928 -0.5090 27 1 6.1993 3.6200 0.8620 28 1 6.1973 3.6028 -0.9179 29 1 4.5811 5.4837 -0.9335 30 1 4.5833 5.5003 0.8463 31 1 7.0163 5.9810 0.8379 32 1 7.0132 5.9642 -0.9421 33 1 7.2591 10.5832 -0.0957 34 1 4.4106 -1.3189 0.0083 35 1 0.6708 -2.6642 0.0237 36 1 3.4985 -3.2065 1.2668 37 1 2.0663 -4.3683 1.2819 38 1 2.0420 -4.3726 -1.2551 39 1 3.4741 -3.2109 -1.2716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744141569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:00 Heat of formation + Delta-G solvation = 9.684822 kcal Electronic energy + Delta-G solvation = -20395.202511 eV Core-core repulsion = 17112.578224 eV Total energy + Delta-G solvation = -3282.624287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.01236 -39.90849 -37.69573 -36.41168 -34.04712 -33.79217 -31.79143 -30.73110 -28.35808 -27.25914 -24.45164 -23.57945 -22.86807 -22.49941 -20.83695 -20.28372 -19.72341 -17.82555 -17.11683 -16.73291 -16.71874 -16.03705 -15.91416 -15.44238 -14.73751 -14.21996 -14.15568 -14.11723 -13.22327 -13.15217 -12.92285 -12.70379 -12.31118 -12.28189 -12.04467 -11.87682 -11.51398 -11.31257 -11.00349 -10.90581 -10.83565 -10.68362 -10.36588 -9.97074 -9.75042 -9.67539 -9.39198 -9.19897 -9.07768 -8.52621 -6.02882 -4.01547 1.27791 1.66439 2.07054 2.88514 3.16194 3.33484 3.40726 3.44931 3.45011 3.88352 4.06203 4.35341 4.46624 4.46977 4.48173 4.67417 4.70982 4.96829 5.03206 5.16506 5.24217 5.30562 5.36494 5.42530 5.54015 5.56408 5.63250 5.68912 5.92729 6.06475 6.37352 6.44671 6.46808 6.70836 6.86318 7.27750 7.38674 7.57879 7.77552 7.99989 8.54622 9.01874 9.58759 11.10363 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039279 B = 0.002730 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.668966 B =10252.954231 C =10866.275864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.277 5.277 3 N -0.228 5.228 4 C 0.003 3.997 5 C 0.551 3.449 6 O -0.505 6.505 7 O -0.340 6.340 8 C 0.065 3.935 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.520 4.520 12 H 0.074 0.926 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.174 4.174 20 C 0.043 3.957 21 C -0.099 4.099 22 C -0.161 4.161 23 C -0.162 4.162 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -29.574 0.200 32.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.066 5.066 3 N -0.064 5.064 4 C -0.155 4.155 5 C 0.393 3.607 6 O -0.391 6.391 7 O -0.255 6.255 8 C -0.008 4.008 9 C -0.139 4.139 10 C -0.048 4.048 11 C -0.558 4.558 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.201 4.201 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.199 4.199 23 C -0.199 4.199 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.620 -28.502 0.200 31.590 hybrid contribution 1.504 -0.645 -0.006 1.636 sum -12.116 -29.147 0.194 31.566 Atomic orbital electron populations 1.22218 0.73029 1.05636 1.04737 1.45393 1.07917 1.02481 1.50827 1.73823 1.02887 1.12650 1.17089 1.20778 0.89874 0.92406 1.12431 1.19536 0.86471 0.81782 0.72869 1.90842 1.23394 1.78492 1.46394 1.86644 1.39765 1.16327 1.82797 1.23556 0.84680 0.90328 1.02202 1.21553 1.00842 0.88543 1.02931 1.19526 0.93071 0.95526 0.96688 1.21067 0.95411 0.88337 1.50982 0.90792 1.25019 0.99072 0.94870 0.94515 1.69910 1.33990 0.99220 1.51021 0.86779 0.85429 0.78509 0.78599 1.20221 1.21327 1.18921 1.21356 0.96704 0.92812 1.09245 1.20434 0.90377 0.89260 1.07907 1.20282 0.98269 0.84890 1.08407 1.23125 1.01997 0.99991 0.94762 1.23129 1.02166 0.99988 0.94663 0.89418 0.88036 0.88610 0.91358 0.91359 0.91495 0.91464 0.96241 0.96673 0.92692 0.81927 0.86491 0.87874 0.87893 0.87900 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.05 59.84 0.66 1.10 16 2 N -0.28 -2.87 3.70 -63.86 -0.24 -3.11 16 3 N -0.23 -3.27 11.99 33.41 0.40 -2.87 16 4 C 0.00 0.04 7.17 -82.78 -0.59 -0.55 16 5 C 0.55 9.72 7.97 34.54 0.28 9.99 16 6 O -0.50 -9.56 16.72 -19.26 -0.32 -9.89 16 7 O -0.34 -6.36 10.23 -40.58 -0.42 -6.77 16 8 C 0.07 1.23 5.48 37.16 0.20 1.43 16 9 C -0.10 -2.13 5.53 -26.74 -0.15 -2.28 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 12 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 15 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 19 C -0.17 -2.09 9.85 -39.35 -0.39 -2.48 16 20 C 0.04 0.42 6.60 -82.21 -0.54 -0.12 16 21 C -0.10 -0.58 5.93 -91.77 -0.54 -1.13 16 22 C -0.16 -0.81 10.05 -26.69 -0.27 -1.08 16 23 C -0.16 -0.81 10.06 -26.70 -0.27 -1.08 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.22 7.13 -51.93 -0.37 -0.15 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 32 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.12 0.43 7.18 -51.93 -0.37 0.06 16 36 H 0.10 0.60 7.94 -51.93 -0.41 0.19 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.60 7.97 -51.93 -0.41 0.19 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -35.30 338.14 -7.25 -42.55 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.73 Total: -4.80 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.16 Total: -10.18 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.94 Total: -33.43 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.74 Total: -16.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.30 -7.25 -42.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds