Wall clock time and date at job start Tue Mar 31 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28474 * 124.87769 * 2 1 4 4 C 1.31855 * 110.06060 * 180.14634 * 3 2 1 5 5 C 1.47586 * 126.52274 * 179.85908 * 4 3 2 6 6 O 1.21493 * 120.00179 * 179.68741 * 5 4 3 7 7 O 1.34732 * 119.99737 * 359.40745 * 5 4 3 8 8 C 1.45202 * 116.99693 * 180.27280 * 7 5 4 9 9 C 1.53001 * 109.47151 * 180.02562 * 8 7 5 10 10 C 1.52990 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47212 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99858 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00027 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00140 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99996 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47225 * 90.00448 * 15 13 11 17 17 H 1.48508 * 109.46787 * 210.00065 * 15 13 11 18 18 H 1.48499 * 109.47391 * 330.00052 * 15 13 11 19 19 C 1.41546 * 106.95548 * 359.59283 * 4 3 2 20 20 C 1.35046 * 124.88471 * 179.69121 * 2 1 3 21 21 C 1.50703 * 126.37612 * 0.02562 * 20 2 1 22 22 C 1.53004 * 117.50153 * 213.72572 * 21 20 2 23 23 C 1.52997 * 117.49861 * 145.06563 * 21 20 2 24 24 H 1.08994 * 109.47179 * 270.30698 * 1 2 3 25 25 H 1.09003 * 109.47420 * 30.31274 * 1 2 3 26 26 H 1.09004 * 109.47183 * 150.31236 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00508 * 8 7 5 28 28 H 1.09004 * 109.46770 * 60.00912 * 8 7 5 29 29 H 1.08998 * 109.47123 * 300.00640 * 9 8 7 30 30 H 1.09002 * 109.47078 * 60.00027 * 9 8 7 31 31 H 1.08998 * 109.47401 * 300.00262 * 10 9 8 32 32 H 1.09004 * 109.46882 * 60.00594 * 10 9 8 33 33 H 0.96994 * 120.00196 * 179.97438 * 14 13 11 34 34 H 1.07998 * 127.25307 * 180.27378 * 19 4 3 35 35 H 1.09005 * 115.55112 * 359.39887 * 21 20 2 36 36 H 1.09002 * 117.49172 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.50052 * 145.01964 * 22 21 20 38 38 H 1.09000 * 117.50353 * 214.98104 * 23 21 20 39 39 H 1.09002 * 117.50113 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1996 1.0540 0.0000 4 6 3.4743 0.7168 -0.0032 5 6 4.6267 1.6387 -0.0071 6 8 5.7584 1.1967 -0.0041 7 8 4.4238 2.9706 -0.0199 8 6 5.6035 3.8171 -0.0292 9 6 5.1770 5.2864 -0.0425 10 6 6.4200 6.1782 -0.0530 11 6 5.9998 7.6255 -0.0653 12 1 4.9511 7.8833 -0.0653 13 6 6.9543 8.6203 -0.0768 14 7 6.5876 9.8833 -0.0881 15 14 8.7683 8.1744 -0.0762 16 1 9.2462 8.0430 -1.4760 17 1 9.5398 9.2404 0.6122 18 1 8.9610 6.8855 0.6358 19 6 3.5271 -0.6977 0.0043 20 6 2.2373 -1.1078 0.0060 21 6 1.7531 -2.5349 0.0131 22 6 2.5948 -3.5627 0.7722 23 6 2.5801 -3.5653 -0.7584 24 1 -0.3633 0.0055 1.0276 25 1 -0.3634 0.8872 -0.5187 26 1 -0.3634 -0.8928 -0.5090 27 1 6.1993 3.6200 0.8620 28 1 6.1973 3.6028 -0.9179 29 1 4.5811 5.4837 -0.9335 30 1 4.5833 5.5003 0.8463 31 1 7.0163 5.9810 0.8379 32 1 7.0132 5.9642 -0.9421 33 1 7.2591 10.5832 -0.0957 34 1 4.4106 -1.3189 0.0083 35 1 0.6708 -2.6642 0.0237 36 1 3.4985 -3.2065 1.2668 37 1 2.0663 -4.3683 1.2819 38 1 2.0420 -4.3726 -1.2551 39 1 3.4741 -3.2109 -1.2716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744141569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:00 Heat of formation + Delta-G solvation = -12.059521 kcal Electronic energy + Delta-G solvation = -20396.145416 eV Core-core repulsion = 17112.578224 eV Total energy + Delta-G solvation = -3283.567193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.88444 -41.30768 -38.14448 -37.87979 -35.95491 -34.63625 -33.85999 -31.55863 -29.77758 -28.52721 -25.65761 -24.48944 -23.94456 -23.21420 -22.12863 -21.76247 -20.78053 -19.03303 -18.58372 -18.24701 -17.88387 -17.14500 -17.11277 -16.29056 -15.93330 -15.69883 -15.34755 -14.87040 -14.80383 -14.54602 -14.08210 -13.79068 -13.63794 -13.46087 -12.88866 -12.87326 -12.63680 -12.38586 -12.26512 -12.09554 -12.07057 -12.04140 -11.78056 -11.68727 -11.43500 -11.37960 -11.32764 -10.78173 -10.27115 -9.85134 -8.30826 -6.36138 0.13941 0.85934 1.23680 1.36894 1.38526 1.50771 1.74349 1.95957 2.35642 3.03467 3.04053 3.14226 3.39031 3.73915 3.96879 3.97119 3.99232 4.08469 4.09275 4.29479 4.33899 4.35146 4.41765 4.63903 4.64437 4.71016 4.71681 4.84874 4.92983 5.03429 5.12271 5.18636 5.24106 5.29336 5.43402 5.46770 5.60696 5.71144 6.24907 6.46794 6.71076 6.82254 7.28162 8.85856 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039279 B = 0.002730 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.668966 B =10252.954231 C =10866.275864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.268 5.268 3 N -0.259 5.259 4 C -0.032 4.032 5 C 0.551 3.449 6 O -0.525 6.525 7 O -0.351 6.351 8 C 0.073 3.927 9 C -0.092 4.092 10 C -0.008 4.008 11 C -0.535 4.535 12 H 0.033 0.967 13 C 0.004 3.996 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.245 1.245 19 C -0.189 4.189 20 C 0.060 3.940 21 C -0.106 4.106 22 C -0.158 4.158 23 C -0.158 4.158 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.268 0.732 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 -32.832 0.199 35.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.058 5.058 3 N -0.097 5.097 4 C -0.187 4.187 5 C 0.395 3.605 6 O -0.413 6.413 7 O -0.266 6.266 8 C 0.000 4.000 9 C -0.129 4.129 10 C -0.045 4.045 11 C -0.573 4.573 12 H 0.052 0.948 13 C -0.193 4.193 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.169 1.169 19 C -0.217 4.217 20 C -0.064 4.064 21 C -0.125 4.125 22 C -0.196 4.196 23 C -0.196 4.196 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.018 -31.773 0.198 34.729 hybrid contribution 1.414 0.324 -0.003 1.451 sum -12.604 -31.449 0.195 33.881 Atomic orbital electron populations 1.22732 0.70068 1.07553 1.06542 1.45896 1.09495 1.01808 1.48558 1.73737 1.02929 1.14664 1.18374 1.20675 0.89683 0.93099 1.15259 1.19956 0.87231 0.81319 0.72042 1.90808 1.24339 1.78545 1.47636 1.86626 1.39556 1.17251 1.83162 1.23315 0.84807 0.88941 1.02963 1.21320 0.99319 0.89862 1.02429 1.19444 0.94550 0.93140 0.97382 1.21389 0.93821 0.91218 1.50878 0.94822 1.26025 1.04737 0.94553 0.93941 1.70061 1.36000 1.00609 1.52342 0.85634 0.78450 0.79059 0.79389 1.18983 1.20773 1.16876 1.21537 0.98337 0.91529 1.10270 1.20955 0.89453 0.90806 1.05188 1.20539 1.00048 0.82422 1.09517 1.23205 1.01480 0.99947 0.94941 1.23208 1.01664 0.99930 0.94765 0.87594 0.87995 0.84970 0.90648 0.90560 0.92047 0.92068 0.95408 0.95501 0.92351 0.81394 0.83385 0.89184 0.85709 0.85682 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.05 127.77 1.41 1.93 16 2 N -0.27 -5.11 3.70 -355.95 -1.32 -6.43 16 3 N -0.26 -7.39 11.99 -48.22 -0.58 -7.96 16 4 C -0.03 -0.99 7.17 42.42 0.30 -0.68 16 5 C 0.55 19.82 7.97 70.29 0.56 20.38 16 6 O -0.53 -20.19 16.72 19.86 0.33 -19.86 16 7 O -0.35 -13.31 10.23 -56.42 -0.58 -13.89 16 8 C 0.07 2.73 5.48 71.98 0.39 3.12 16 9 C -0.09 -3.89 5.53 30.59 0.17 -3.72 16 10 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 11 C -0.54 -31.86 9.66 25.60 0.25 -31.61 16 12 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 13 C 0.00 0.26 5.47 84.65 0.46 0.72 16 14 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 15 Si 0.95 45.09 27.47 68.60 1.88 46.98 16 16 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 19 C -0.19 -4.50 9.85 22.42 0.22 -4.28 16 20 C 0.06 1.05 6.60 41.40 0.27 1.32 16 21 C -0.11 -0.89 5.93 -11.54 -0.07 -0.96 16 22 C -0.16 -1.14 10.05 30.62 0.31 -0.83 16 23 C -0.16 -1.13 10.06 30.62 0.31 -0.82 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.13 0.03 7.13 -2.38 -0.02 0.02 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 32 H 0.03 1.24 7.57 -2.38 -0.02 1.22 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.15 0.34 7.18 -2.38 -0.02 0.32 16 36 H 0.09 0.91 7.94 -2.39 -0.02 0.89 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.13 0.36 8.14 -2.39 -0.02 0.35 16 39 H 0.09 0.90 7.97 -2.39 -0.02 0.89 16 Total: -1.00 -78.78 338.14 5.74 -73.04 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 0.98 Total: 4.25 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.71 Total: -15.68 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.59 Total: -74.84 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.25 Total: -33.75 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -78.78 5.74 -73.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.978 kcal (2) G-P(sol) polarization free energy of solvation -78.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds