Wall clock time and date at job start Tue Mar 31 2020 00:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47165 * 2 1 4 4 C 1.46903 * 110.99990 * 199.61203 * 3 2 1 5 5 C 1.50692 * 109.46994 * 66.04607 * 4 3 2 6 6 H 1.08000 * 120.00234 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99683 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99931 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00171 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47549 * 90.00196 * 9 7 5 11 11 H 1.48500 * 109.47392 * 210.00474 * 9 7 5 12 12 H 1.48509 * 109.47138 * 329.99952 * 9 7 5 13 13 C 1.46898 * 111.00020 * 75.65749 * 3 2 1 14 14 C 1.50697 * 109.47553 * 199.97820 * 13 3 2 15 15 O 1.21299 * 119.99597 * 5.11081 * 14 13 3 16 16 N 1.34774 * 120.00535 * 185.10525 * 14 13 3 17 17 C 1.40107 * 120.00222 * 184.81401 * 16 14 13 18 18 C 1.38848 * 120.01417 * 34.04584 * 17 16 14 19 19 C 1.38089 * 119.98172 * 180.02562 * 18 17 16 20 20 C 1.38719 * 120.01838 * 0.02562 * 19 18 17 21 21 O 1.35969 * 119.98432 * 179.97438 * 20 19 18 22 22 C 1.38719 * 120.02678 * 0.23288 * 20 19 18 23 23 C 1.38087 * 120.01857 * 359.49166 * 22 20 19 24 24 H 1.09004 * 109.47093 * 64.47238 * 1 2 3 25 25 H 1.09004 * 109.47440 * 184.46804 * 1 2 3 26 26 H 1.09003 * 109.47601 * 304.47366 * 1 2 3 27 27 H 1.09005 * 109.47314 * 239.99761 * 2 1 3 28 28 H 1.09002 * 109.46998 * 120.00153 * 2 1 3 29 29 H 1.08997 * 109.47358 * 186.04830 * 4 3 2 30 30 H 1.09000 * 109.46993 * 306.04486 * 4 3 2 31 31 H 0.96989 * 119.99998 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47019 * 79.97780 * 13 3 2 33 33 H 1.09006 * 109.47535 * 319.98519 * 13 3 2 34 34 H 0.96996 * 119.99665 * 4.81506 * 16 14 13 35 35 H 1.08000 * 120.01114 * 0.02562 * 18 17 16 36 36 H 1.08003 * 119.99088 * 180.02562 * 19 18 17 37 37 H 0.96699 * 113.99640 * 90.00112 * 21 20 19 38 38 H 1.08002 * 119.99039 * 179.71825 * 22 20 19 39 39 H 1.07998 * 120.00975 * 180.23521 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4131 1.4507 -0.4603 5 6 3.4828 1.0458 -1.9102 6 1 2.5820 0.7679 -2.4371 7 6 4.6967 1.0301 -2.5640 8 7 4.7574 0.6772 -3.8295 9 14 6.2546 1.5115 -1.6528 10 1 6.8561 0.3055 -1.0293 11 1 7.2218 2.1097 -2.6077 12 1 5.9245 2.5022 -0.5969 13 6 1.8748 1.9945 1.3287 14 6 1.9092 3.4955 1.1993 15 8 1.9479 4.0088 0.1009 16 7 1.8968 4.2677 2.3038 17 6 1.8269 5.6618 2.1832 18 6 1.1019 6.2338 1.1464 19 6 1.0338 7.6079 1.0279 20 6 1.6900 8.4168 1.9441 21 8 1.6229 9.7697 1.8265 22 6 2.4188 7.8459 2.9771 23 6 2.4831 6.4721 3.1002 24 1 -0.3633 0.4429 -0.9274 25 1 -0.3634 -1.0246 0.0801 26 1 -0.3634 0.5817 0.8472 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7849 2.4693 -0.3493 30 1 4.0250 0.7736 0.1358 31 1 5.6112 0.6666 -4.2895 32 1 2.6928 1.6663 1.9701 33 1 0.9246 1.6893 1.7670 34 1 1.9363 3.8582 3.1822 35 1 0.5913 5.6042 0.4327 36 1 0.4696 8.0530 0.2216 37 1 0.8818 10.1696 2.3018 38 1 2.9332 8.4762 3.6875 39 1 3.0475 6.0278 3.9067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746463833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:48 Heat of formation + Delta-G solvation = -35.502097 kcal Electronic energy + Delta-G solvation = -21325.120271 eV Core-core repulsion = 18040.536532 eV Total energy + Delta-G solvation = -3284.583739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.47876 -39.10386 -37.18362 -36.25910 -34.11746 -32.52350 -31.08033 -30.51591 -29.41577 -27.91716 -25.39738 -23.17556 -22.47369 -22.11634 -20.63310 -19.70085 -18.50865 -17.75261 -16.96124 -16.77749 -15.70940 -15.51318 -15.26744 -14.64280 -14.32462 -14.14872 -13.93087 -13.61753 -13.43052 -13.02224 -12.77851 -12.62230 -12.44252 -12.23758 -12.09463 -11.76743 -11.28275 -11.21955 -10.72111 -10.65318 -10.47079 -10.13905 -10.06936 -9.80986 -9.55011 -9.18529 -9.03046 -8.52376 -7.99234 -7.46570 -6.00036 -3.96030 1.10309 1.27921 2.85110 3.05673 3.30251 3.39101 3.42333 3.62262 4.13426 4.46722 4.65254 4.77280 4.86727 5.00401 5.24006 5.32014 5.39443 5.46514 5.50566 5.54005 5.67137 5.87503 5.90179 5.97876 6.00052 6.20215 6.27592 6.35652 6.44519 6.63555 6.64841 6.85592 6.87698 6.98068 7.41765 7.53978 7.65487 7.85617 7.99143 8.41786 8.69095 9.08668 9.61800 11.13327 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.004599 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.243532 B = 6087.267915 C = 6994.572288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.509 5.509 4 C 0.163 3.837 5 C -0.502 4.502 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.036 3.964 14 C 0.507 3.493 15 O -0.476 6.476 16 N -0.687 5.687 17 C 0.152 3.848 18 C -0.105 4.105 19 C -0.122 4.122 20 C 0.078 3.922 21 O -0.499 6.499 22 C -0.126 4.126 23 C -0.137 4.137 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.021 0.979 29 H 0.033 0.967 30 H -0.019 1.019 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.407 0.593 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.385 0.615 38 H 0.129 0.871 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 9.551 18.633 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.234 5.234 4 C 0.038 3.962 5 C -0.540 4.540 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.096 4.096 14 C 0.293 3.707 15 O -0.345 6.345 16 N -0.335 5.335 17 C 0.058 3.942 18 C -0.125 4.125 19 C -0.141 4.141 20 C 0.033 3.967 21 O -0.309 6.309 22 C -0.145 4.145 23 C -0.157 4.157 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.039 0.961 29 H 0.051 0.949 30 H -0.001 1.001 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.242 0.758 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.240 0.760 38 H 0.147 0.853 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.480 9.987 16.920 21.400 hybrid contribution 1.151 -0.258 1.716 2.082 sum -7.329 9.730 18.636 22.264 Atomic orbital electron populations 1.21795 0.96222 1.00204 1.01903 1.22064 0.94603 0.88959 1.01618 1.61657 1.24760 1.17404 1.19566 1.20246 0.82802 0.96332 0.96866 1.20961 0.95340 1.44400 0.93348 0.90011 1.24859 0.98634 0.94973 0.94742 1.69885 1.25658 1.48815 1.09623 0.86898 0.83861 0.79070 0.80138 1.20396 1.21073 1.19367 1.21945 1.02440 0.90669 0.94572 1.21139 0.75779 0.89970 0.83804 1.90789 1.43613 1.74460 1.25610 1.43784 1.75218 1.04109 1.10353 1.17811 0.96380 0.83136 0.96910 1.21144 0.98400 0.94533 0.98471 1.21332 1.00043 0.93222 0.99521 1.18417 0.99787 0.82863 0.95653 1.84878 1.53443 1.16870 1.75661 1.21133 1.00639 0.94540 0.98172 1.20752 1.00747 0.93054 1.01189 0.91929 0.93103 0.93873 0.88513 0.96119 0.94872 1.00131 0.92719 0.92658 0.88357 0.75788 0.84061 0.85125 0.76042 0.85313 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.07 37.16 0.37 -1.77 16 2 C 0.06 1.01 5.51 -3.83 -0.02 0.99 16 3 N -0.51 -10.59 3.95 -237.52 -0.94 -11.53 16 4 C 0.16 4.08 3.43 -4.98 -0.02 4.06 16 5 C -0.50 -14.68 8.79 -34.44 -0.30 -14.99 16 6 H 0.08 2.59 7.56 -52.49 -0.40 2.19 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.87 22.37 27.47 -169.99 -4.67 17.70 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 13 C 0.04 0.56 5.30 -4.98 -0.03 0.54 16 14 C 0.51 8.57 7.14 -10.99 -0.08 8.50 16 15 O -0.48 -10.45 13.23 5.54 0.07 -10.38 16 16 N -0.69 -8.68 5.34 -9.83 -0.05 -8.73 16 17 C 0.15 2.04 6.27 -83.62 -0.52 1.52 16 18 C -0.11 -1.53 8.65 -39.41 -0.34 -1.87 16 19 C -0.12 -1.57 9.98 -39.46 -0.39 -1.96 16 20 C 0.08 0.92 6.70 -39.23 -0.26 0.66 16 21 O -0.50 -5.16 13.50 -19.64 -0.27 -5.42 16 22 C -0.13 -1.37 9.98 -39.46 -0.39 -1.76 16 23 C -0.14 -1.52 9.96 -39.41 -0.39 -1.91 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.56 6.66 -51.93 -0.35 0.22 16 27 H 0.10 2.05 6.58 -51.93 -0.34 1.70 16 28 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 29 H 0.03 0.89 5.96 -51.93 -0.31 0.58 16 30 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.06 0.78 8.00 -51.93 -0.42 0.37 16 33 H 0.10 1.23 6.44 -51.93 -0.33 0.89 16 34 H 0.41 3.46 8.82 -40.82 -0.36 3.10 16 35 H 0.14 2.29 6.45 -52.49 -0.34 1.96 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.38 1.92 9.06 45.56 0.41 2.33 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -36.49 325.29 -7.17 -43.67 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.52 Total: 3.34 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.48 Total: -6.04 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.22 Total: -47.77 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.19 Total: -15.80 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.49 -7.17 -43.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.164 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds