Wall clock time and date at job start Tue Mar 31 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47165 * 2 1 4 4 C 1.46903 * 110.99990 * 199.61203 * 3 2 1 5 5 C 1.50692 * 109.46994 * 66.04607 * 4 3 2 6 6 H 1.08000 * 120.00234 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99683 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99931 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00171 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47549 * 90.00196 * 9 7 5 11 11 H 1.48500 * 109.47392 * 210.00474 * 9 7 5 12 12 H 1.48509 * 109.47138 * 329.99952 * 9 7 5 13 13 C 1.46898 * 111.00020 * 75.65749 * 3 2 1 14 14 C 1.50697 * 109.47553 * 199.97820 * 13 3 2 15 15 O 1.21299 * 119.99597 * 5.11081 * 14 13 3 16 16 N 1.34774 * 120.00535 * 185.10525 * 14 13 3 17 17 C 1.40107 * 120.00222 * 184.81401 * 16 14 13 18 18 C 1.38848 * 120.01417 * 34.04584 * 17 16 14 19 19 C 1.38089 * 119.98172 * 180.02562 * 18 17 16 20 20 C 1.38719 * 120.01838 * 0.02562 * 19 18 17 21 21 O 1.35969 * 119.98432 * 179.97438 * 20 19 18 22 22 C 1.38719 * 120.02678 * 0.23288 * 20 19 18 23 23 C 1.38087 * 120.01857 * 359.49166 * 22 20 19 24 24 H 1.09004 * 109.47093 * 64.47238 * 1 2 3 25 25 H 1.09004 * 109.47440 * 184.46804 * 1 2 3 26 26 H 1.09003 * 109.47601 * 304.47366 * 1 2 3 27 27 H 1.09005 * 109.47314 * 239.99761 * 2 1 3 28 28 H 1.09002 * 109.46998 * 120.00153 * 2 1 3 29 29 H 1.08997 * 109.47358 * 186.04830 * 4 3 2 30 30 H 1.09000 * 109.46993 * 306.04486 * 4 3 2 31 31 H 0.96989 * 119.99998 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47019 * 79.97780 * 13 3 2 33 33 H 1.09006 * 109.47535 * 319.98519 * 13 3 2 34 34 H 0.96996 * 119.99665 * 4.81506 * 16 14 13 35 35 H 1.08000 * 120.01114 * 0.02562 * 18 17 16 36 36 H 1.08003 * 119.99088 * 180.02562 * 19 18 17 37 37 H 0.96699 * 113.99640 * 90.00112 * 21 20 19 38 38 H 1.08002 * 119.99039 * 179.71825 * 22 20 19 39 39 H 1.07998 * 120.00975 * 180.23521 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4131 1.4507 -0.4603 5 6 3.4828 1.0458 -1.9102 6 1 2.5820 0.7679 -2.4371 7 6 4.6967 1.0301 -2.5640 8 7 4.7574 0.6772 -3.8295 9 14 6.2546 1.5115 -1.6528 10 1 6.8561 0.3055 -1.0293 11 1 7.2218 2.1097 -2.6077 12 1 5.9245 2.5022 -0.5969 13 6 1.8748 1.9945 1.3287 14 6 1.9092 3.4955 1.1993 15 8 1.9479 4.0088 0.1009 16 7 1.8968 4.2677 2.3038 17 6 1.8269 5.6618 2.1832 18 6 1.1019 6.2338 1.1464 19 6 1.0338 7.6079 1.0279 20 6 1.6900 8.4168 1.9441 21 8 1.6229 9.7697 1.8265 22 6 2.4188 7.8459 2.9771 23 6 2.4831 6.4721 3.1002 24 1 -0.3633 0.4429 -0.9274 25 1 -0.3634 -1.0246 0.0801 26 1 -0.3634 0.5817 0.8472 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7849 2.4693 -0.3493 30 1 4.0250 0.7736 0.1358 31 1 5.6112 0.6666 -4.2895 32 1 2.6928 1.6663 1.9701 33 1 0.9246 1.6893 1.7670 34 1 1.9363 3.8582 3.1822 35 1 0.5913 5.6042 0.4327 36 1 0.4696 8.0530 0.2216 37 1 0.8818 10.1696 2.3018 38 1 2.9332 8.4762 3.6875 39 1 3.0475 6.0278 3.9067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746463833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:46 Heat of formation + Delta-G solvation = -65.199844 kcal Electronic energy + Delta-G solvation = -21326.408062 eV Core-core repulsion = 18040.536532 eV Total energy + Delta-G solvation = -3285.871530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58568 -40.16717 -38.45128 -37.47883 -35.23780 -34.72459 -32.01617 -31.91253 -30.91342 -29.27102 -26.94333 -24.15915 -23.95308 -23.47561 -21.95001 -21.09800 -19.35734 -19.13086 -18.67432 -18.11959 -17.02000 -16.61444 -16.39722 -16.13921 -15.89734 -15.35889 -15.32674 -15.02667 -14.57610 -14.43628 -14.22920 -14.04979 -13.81161 -13.54758 -13.11305 -12.98222 -12.87970 -12.70596 -12.56668 -12.13850 -11.88184 -11.63969 -11.53631 -11.42491 -11.20325 -10.81290 -10.74207 -9.98710 -9.02437 -8.96469 -8.29553 -6.30934 0.15591 0.35073 1.27094 1.32601 1.41960 1.63978 1.98180 2.31772 2.70506 3.03449 3.22958 3.33694 3.75044 3.97269 4.00369 4.17696 4.33167 4.34920 4.36697 4.48814 4.53993 4.61412 4.71501 4.84363 4.92855 5.00587 5.06911 5.12826 5.28554 5.32271 5.43792 5.44540 5.47493 5.57112 5.91792 5.95471 6.34393 6.46765 6.66484 6.74343 6.89536 7.26734 7.31161 8.87682 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.004599 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.243532 B = 6087.267915 C = 6994.572288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 N -0.538 5.538 4 C 0.180 3.820 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.255 1.255 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.036 3.964 14 C 0.505 3.495 15 O -0.540 6.540 16 N -0.664 5.664 17 C 0.129 3.871 18 C -0.127 4.127 19 C -0.139 4.139 20 C 0.082 3.918 21 O -0.508 6.508 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.015 0.985 30 H -0.007 1.007 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.429 0.571 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.409 0.591 38 H 0.158 0.842 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 10.270 22.864 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 N -0.263 5.263 4 C 0.052 3.948 5 C -0.548 4.548 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.180 1.180 11 H -0.208 1.208 12 H -0.186 1.186 13 C -0.094 4.094 14 C 0.292 3.708 15 O -0.414 6.414 16 N -0.313 5.313 17 C 0.034 3.966 18 C -0.148 4.148 19 C -0.158 4.158 20 C 0.037 3.963 21 O -0.321 6.321 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.268 0.732 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.268 0.732 38 H 0.176 0.824 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.747 10.708 21.240 25.017 hybrid contribution 0.772 -0.387 0.410 0.956 sum -6.975 10.321 21.650 24.978 Atomic orbital electron populations 1.21719 0.93635 1.02138 1.01641 1.22049 0.96666 0.87601 1.00855 1.61425 1.22140 1.19247 1.23444 1.19863 0.85776 0.94921 0.94192 1.21242 0.93860 1.43855 0.95817 0.94553 1.25819 1.02624 0.94970 0.95615 1.70048 1.26810 1.50546 1.11602 0.85750 0.78963 0.79543 0.78870 1.17984 1.20839 1.18613 1.22096 1.05556 0.89493 0.92303 1.21425 0.74814 0.90746 0.83777 1.90779 1.46947 1.75482 1.28160 1.43463 1.73659 1.03821 1.10374 1.17994 0.97465 0.83504 0.97594 1.21045 0.99707 0.95070 0.98953 1.21427 1.00992 0.92916 1.00432 1.18520 0.99103 0.83404 0.95313 1.84812 1.54877 1.16001 1.76437 1.21484 0.99936 0.94843 0.98091 1.21078 0.99525 0.92978 1.00850 0.94560 0.90495 0.91270 0.92839 0.93172 0.96708 0.98938 0.92503 0.89794 0.84419 0.73159 0.86986 0.84927 0.73210 0.82438 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 10.07 71.98 0.72 -3.08 16 2 C 0.06 1.99 5.51 86.30 0.48 2.46 16 3 N -0.54 -22.22 3.95 -905.37 -3.58 -25.80 16 4 C 0.18 9.00 3.43 85.55 0.29 9.29 16 5 C -0.51 -31.09 8.79 25.60 0.22 -30.86 16 6 H 0.04 2.47 7.56 -2.91 -0.02 2.45 16 7 C 0.01 0.40 5.47 84.66 0.46 0.87 16 8 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 9 Si 0.95 46.55 27.47 68.60 1.88 48.43 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.26 -12.51 6.54 99.48 0.65 -11.85 16 13 C 0.04 1.06 5.30 85.56 0.45 1.51 16 14 C 0.50 16.61 7.14 87.66 0.63 17.24 16 15 O -0.54 -24.48 13.23 -3.09 -0.04 -24.53 16 16 N -0.66 -15.37 5.34 -303.39 -1.62 -16.99 16 17 C 0.13 3.27 6.27 38.11 0.24 3.51 16 18 C -0.13 -3.79 8.65 22.38 0.19 -3.60 16 19 C -0.14 -3.59 9.98 22.35 0.22 -3.37 16 20 C 0.08 1.79 6.70 22.50 0.15 1.94 16 21 O -0.51 -9.36 13.50 -93.21 -1.26 -10.62 16 22 C -0.12 -2.30 9.98 22.35 0.22 -2.08 16 23 C -0.12 -2.35 9.96 22.38 0.22 -2.13 16 24 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.07 1.60 6.66 -2.39 -0.02 1.58 16 27 H 0.05 2.36 6.58 -2.38 -0.02 2.34 16 28 H 0.05 1.49 8.00 -2.39 -0.02 1.47 16 29 H 0.01 0.80 5.96 -2.39 -0.01 0.79 16 30 H -0.01 -0.33 7.55 -2.39 -0.02 -0.34 16 31 H 0.27 16.15 8.31 -92.72 -0.77 15.38 16 32 H 0.08 2.01 8.00 -2.38 -0.02 2.00 16 33 H 0.14 2.86 6.44 -2.38 -0.02 2.84 16 34 H 0.43 5.72 8.82 -92.71 -0.82 4.90 16 35 H 0.11 3.95 6.45 -2.91 -0.02 3.93 16 36 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.41 3.04 9.06 -74.06 -0.67 2.36 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -85.19 325.29 -0.27 -85.45 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.46 Total: 13.95 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.51 Total: -8.30 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.90 Total: -104.39 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.30 Total: -35.15 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.43 kcal Total: -85.19 -0.27 -85.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.253 kcal (2) G-P(sol) polarization free energy of solvation -85.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds