Wall clock time and date at job start Tue Mar 31 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99865 * 2 1 4 4 C 1.50701 * 109.47419 * 66.04365 * 3 2 1 5 5 O 1.21280 * 119.99718 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99845 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00034 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47288 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99952 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00103 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47062 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46931 * 120.00437 * 12 10 8 15 15 H 1.48493 * 109.47254 * 240.00046 * 12 10 8 16 16 C 1.46897 * 111.00052 * 236.04457 * 2 1 3 17 17 C 1.50707 * 109.47055 * 293.95574 * 16 2 1 18 18 C 1.38289 * 119.96864 * 269.97906 * 17 16 2 19 19 C 1.38240 * 120.10976 * 180.02562 * 18 17 16 20 20 C 1.38174 * 120.05836 * 359.67645 * 19 18 17 21 21 C 1.38709 * 119.93612 * 0.62068 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.68169 * 21 20 19 23 23 C 1.38116 * 119.97322 * 90.00238 * 17 16 2 24 24 H 1.09008 * 109.46953 * 183.95256 * 1 2 3 25 25 H 1.09000 * 109.47448 * 303.95652 * 1 2 3 26 26 H 1.09003 * 109.46949 * 63.96063 * 1 2 3 27 27 H 1.09003 * 109.46926 * 186.04686 * 3 2 1 28 28 H 1.09005 * 109.47175 * 306.04231 * 3 2 1 29 29 H 0.96995 * 120.00547 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47243 * 300.00430 * 7 6 4 31 31 H 1.09005 * 109.46959 * 60.00036 * 7 6 4 32 32 H 0.97000 * 120.00582 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47307 * 173.95279 * 16 2 1 34 34 H 1.09000 * 109.47236 * 53.94975 * 16 2 1 35 35 H 1.08002 * 119.94362 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.97243 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.03053 * 180.29714 * 20 19 18 38 38 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 39 39 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4457 2.1406 6 7 2.0188 3.3199 1.5236 7 6 1.6698 3.9770 2.7856 8 6 2.2099 5.3839 2.7855 9 1 2.7580 5.7518 1.9308 10 6 2.0035 6.2016 3.8763 11 7 1.3357 5.7536 4.9170 12 14 2.6737 7.9452 3.8766 13 1 3.3828 8.2032 2.5976 14 1 1.5515 8.9068 4.0227 15 1 3.6190 8.1120 5.0096 16 6 1.9955 -0.7660 -1.1375 17 6 1.6369 -2.2205 -0.9728 18 6 2.4948 -3.0716 -0.3005 19 6 2.1691 -4.4064 -0.1481 20 6 0.9818 -4.8920 -0.6616 21 6 0.1225 -4.0416 -1.3417 22 8 -1.0428 -4.5182 -1.8534 23 6 0.4520 -2.7023 -1.4937 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4511 -0.9234 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 2.5242 3.8010 0.8498 30 1 0.5855 4.0045 2.8932 31 1 2.1034 3.4210 3.6168 32 1 1.1907 6.3287 5.6845 33 1 3.0798 -0.6611 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.4213 -2.6930 0.1055 36 1 2.8410 -5.0692 0.3770 37 1 0.7255 -5.9338 -0.5382 38 1 -0.9699 -4.8432 -2.7613 39 1 -0.2173 -2.0374 -2.0194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748815948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:06 Heat of formation + Delta-G solvation = -48.420754 kcal Electronic energy + Delta-G solvation = -20660.523024 eV Core-core repulsion = 17375.379090 eV Total energy + Delta-G solvation = -3285.143934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09305 -39.03828 -37.42081 -36.09252 -34.10610 -32.32696 -31.77517 -30.04056 -28.59480 -27.14880 -26.52352 -23.41354 -22.73227 -22.11721 -21.04166 -19.61557 -18.22824 -17.09299 -16.55281 -16.10362 -15.99652 -15.57862 -15.37575 -15.16903 -14.70910 -14.27311 -14.13697 -13.89844 -13.56383 -12.93389 -12.56714 -12.39939 -12.29275 -12.10406 -11.92772 -11.87814 -11.48823 -11.47309 -11.19406 -10.94134 -10.85337 -10.64366 -10.30717 -9.37101 -9.07529 -9.00656 -8.76686 -8.72731 -8.19942 -7.83548 -6.16130 -4.23001 1.06752 1.12963 3.23482 3.30248 3.33070 3.35716 3.41162 3.80760 4.02148 4.30266 4.47066 4.58664 4.68899 4.91494 5.08968 5.19224 5.19910 5.26628 5.34837 5.38266 5.44071 5.60695 5.66205 5.70342 5.76930 5.81236 6.19683 6.22949 6.34388 6.42732 6.61773 6.97282 7.08340 7.34347 7.41885 7.47474 7.53776 7.68880 7.98157 8.65593 8.80506 9.15172 9.43927 10.94117 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045365 B = 0.002695 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.065975 B =10387.779995 C =10435.603889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.035 3.965 4 C 0.498 3.502 5 O -0.537 6.537 6 N -0.715 5.715 7 C 0.251 3.749 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.091 3.909 17 C -0.057 4.057 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.147 4.147 21 C 0.099 3.901 22 O -0.500 6.500 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.017 0.983 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.389 0.611 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.387 0.613 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -17.785 -17.063 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.240 5.240 3 C -0.096 4.096 4 C 0.282 3.718 5 O -0.415 6.415 6 N -0.365 5.365 7 C 0.130 3.870 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.036 4.036 17 C -0.057 4.057 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.166 4.166 21 C 0.055 3.945 22 O -0.310 6.310 23 C -0.156 4.156 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.036 0.964 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.221 0.779 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.418 -18.201 -15.256 23.792 hybrid contribution 0.406 1.454 -1.382 2.047 sum 1.824 -16.747 -16.638 23.678 Atomic orbital electron populations 1.22641 0.86346 1.02835 1.01280 1.61622 1.09117 1.12005 1.41252 1.22042 1.01571 0.89407 0.96604 1.20267 0.80729 0.82405 0.88382 1.90638 1.40043 1.64278 1.46534 1.46446 1.55755 1.12473 1.21783 1.19084 0.96446 0.91472 0.79975 1.21264 1.36669 0.97177 1.02951 0.91880 1.24962 0.94970 0.98992 0.95163 1.69987 1.39589 1.36699 1.05993 0.86364 0.78702 0.83737 0.78118 1.19656 1.20820 1.20789 1.21113 1.00662 0.89729 0.92119 1.19602 0.93942 0.95151 0.97022 1.21093 1.00192 0.93068 0.97885 1.21043 0.96369 0.95720 0.99212 1.21401 0.94321 1.00086 1.00797 1.18418 0.86113 0.91653 0.98306 1.84856 1.29715 1.82710 1.33673 1.21325 0.96753 0.95215 1.02275 0.91355 0.88857 0.96436 0.88317 0.92394 0.77851 0.95648 0.95533 0.92502 0.89606 0.93902 0.85464 0.85562 0.85666 0.75746 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.78 60.07 0.53 0.77 16 2 N -0.52 -7.43 4.49 -245.81 -1.10 -8.54 16 3 C 0.03 0.50 5.45 -4.98 -0.03 0.47 16 4 C 0.50 9.92 7.52 -10.99 -0.08 9.84 16 5 O -0.54 -13.01 14.33 5.56 0.08 -12.93 16 6 N -0.72 -14.95 5.55 -61.47 -0.34 -15.29 16 7 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 8 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 12 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.09 0.99 5.12 -4.97 -0.03 0.96 16 17 C -0.06 -0.63 4.88 -104.64 -0.51 -1.14 16 18 C -0.10 -1.09 9.70 -39.56 -0.38 -1.48 16 19 C -0.11 -1.00 10.04 -39.60 -0.40 -1.40 16 20 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 21 C 0.10 1.04 6.70 -39.22 -0.26 0.78 16 22 O -0.50 -4.66 13.50 -19.44 -0.26 -4.93 16 23 C -0.14 -1.47 7.90 -39.43 -0.31 -1.78 16 24 H 0.07 1.00 6.17 -51.92 -0.32 0.68 16 25 H 0.09 1.70 5.82 -51.93 -0.30 1.40 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 1.17 7.93 -51.93 -0.41 0.75 16 28 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.09 0.79 7.87 -51.93 -0.41 0.39 16 34 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.39 1.60 9.06 45.56 0.41 2.01 16 39 H 0.13 1.25 8.03 -52.48 -0.42 0.83 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -34.33 332.17 -7.92 -42.25 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.70 Total: 5.62 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.31 Total: -1.55 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.71 Total: -49.32 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.18 Total: -17.85 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.33 -7.92 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748815948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.168 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds