Wall clock time and date at job start Tue Mar 31 2020 01:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99865 * 2 1 4 4 C 1.50701 * 109.47419 * 66.04365 * 3 2 1 5 5 O 1.21280 * 119.99718 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99845 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00034 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47288 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99952 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00103 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47062 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46931 * 120.00437 * 12 10 8 15 15 H 1.48493 * 109.47254 * 240.00046 * 12 10 8 16 16 C 1.46897 * 111.00052 * 236.04457 * 2 1 3 17 17 C 1.50707 * 109.47055 * 293.95574 * 16 2 1 18 18 C 1.38289 * 119.96864 * 269.97906 * 17 16 2 19 19 C 1.38240 * 120.10976 * 180.02562 * 18 17 16 20 20 C 1.38174 * 120.05836 * 359.67645 * 19 18 17 21 21 C 1.38709 * 119.93612 * 0.62068 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.68169 * 21 20 19 23 23 C 1.38116 * 119.97322 * 90.00238 * 17 16 2 24 24 H 1.09008 * 109.46953 * 183.95256 * 1 2 3 25 25 H 1.09000 * 109.47448 * 303.95652 * 1 2 3 26 26 H 1.09003 * 109.46949 * 63.96063 * 1 2 3 27 27 H 1.09003 * 109.46926 * 186.04686 * 3 2 1 28 28 H 1.09005 * 109.47175 * 306.04231 * 3 2 1 29 29 H 0.96995 * 120.00547 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47243 * 300.00430 * 7 6 4 31 31 H 1.09005 * 109.46959 * 60.00036 * 7 6 4 32 32 H 0.97000 * 120.00582 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47307 * 173.95279 * 16 2 1 34 34 H 1.09000 * 109.47236 * 53.94975 * 16 2 1 35 35 H 1.08002 * 119.94362 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.97243 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.03053 * 180.29714 * 20 19 18 38 38 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 39 39 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4457 2.1406 6 7 2.0188 3.3199 1.5236 7 6 1.6698 3.9770 2.7856 8 6 2.2099 5.3839 2.7855 9 1 2.7580 5.7518 1.9308 10 6 2.0035 6.2016 3.8763 11 7 1.3357 5.7536 4.9170 12 14 2.6737 7.9452 3.8766 13 1 3.3828 8.2032 2.5976 14 1 1.5515 8.9068 4.0227 15 1 3.6190 8.1120 5.0096 16 6 1.9955 -0.7660 -1.1375 17 6 1.6369 -2.2205 -0.9728 18 6 2.4948 -3.0716 -0.3005 19 6 2.1691 -4.4064 -0.1481 20 6 0.9818 -4.8920 -0.6616 21 6 0.1225 -4.0416 -1.3417 22 8 -1.0428 -4.5182 -1.8534 23 6 0.4520 -2.7023 -1.4937 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4511 -0.9234 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 2.5242 3.8010 0.8498 30 1 0.5855 4.0045 2.8932 31 1 2.1034 3.4210 3.6168 32 1 1.1907 6.3287 5.6845 33 1 3.0798 -0.6611 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.4213 -2.6930 0.1055 36 1 2.8410 -5.0692 0.3770 37 1 0.7255 -5.9338 -0.5382 38 1 -0.9699 -4.8432 -2.7613 39 1 -0.2173 -2.0374 -2.0194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748815948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:04 Heat of formation + Delta-G solvation = -75.917660 kcal Electronic energy + Delta-G solvation = -20661.715379 eV Core-core repulsion = 17375.379090 eV Total energy + Delta-G solvation = -3286.336289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.97250 -40.44974 -38.37610 -37.07356 -36.02484 -34.33173 -32.64081 -30.79273 -30.19125 -28.39485 -27.89664 -24.97076 -23.61455 -23.47317 -21.92628 -21.28910 -19.11033 -18.74516 -17.59214 -17.26113 -17.19333 -16.95242 -16.60245 -16.32614 -16.06482 -15.65472 -15.50607 -15.05072 -14.63736 -14.18804 -14.09024 -13.86797 -13.73254 -13.15113 -13.08171 -12.86352 -12.82057 -12.72618 -12.57645 -12.51496 -12.23256 -12.18274 -11.44609 -11.38348 -10.80650 -10.63622 -9.85445 -9.77410 -9.52580 -9.23764 -8.28619 -6.45207 0.31118 0.38244 1.43532 1.44743 1.58215 1.83434 2.27797 2.44807 2.75375 3.06347 3.18275 3.35334 3.80056 3.95616 3.99727 4.18462 4.30435 4.34052 4.39364 4.44897 4.48686 4.59747 4.66823 4.74893 4.98573 5.07805 5.10469 5.13497 5.25777 5.44718 5.49269 5.51241 5.65418 5.72116 5.86125 5.90224 5.97638 6.08474 6.66937 6.87591 6.98450 7.24773 7.57446 8.83884 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045365 B = 0.002695 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.065975 B =10387.779995 C =10435.603889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.050 3.950 4 C 0.492 3.508 5 O -0.587 6.587 6 N -0.709 5.709 7 C 0.268 3.732 8 C -0.553 4.553 9 H 0.085 0.915 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.985 3.015 13 H -0.251 1.251 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.095 3.905 17 C -0.070 4.070 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.155 4.155 21 C 0.091 3.909 22 O -0.513 6.513 23 C -0.148 4.148 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.409 0.591 30 H -0.016 1.016 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.409 0.591 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -17.423 -19.466 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.081 4.081 4 C 0.279 3.721 5 O -0.467 6.467 6 N -0.361 5.361 7 C 0.145 3.855 8 C -0.591 4.591 9 H 0.103 0.897 10 C -0.198 4.198 11 N -0.571 5.571 12 Si 0.809 3.191 13 H -0.175 1.175 14 H -0.206 1.206 15 H -0.205 1.205 16 C -0.031 4.031 17 C -0.070 4.070 18 C -0.137 4.137 19 C -0.126 4.126 20 C -0.174 4.174 21 C 0.047 3.953 22 O -0.326 6.326 23 C -0.167 4.167 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.244 0.756 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.267 0.733 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.078 -17.861 -17.739 25.360 hybrid contribution -0.162 1.199 -0.647 1.372 sum 2.916 -16.662 -18.386 24.983 Atomic orbital electron populations 1.22433 0.87290 1.02121 1.00397 1.61523 1.08580 1.12382 1.43847 1.21977 1.03693 0.89211 0.93176 1.21413 0.79043 0.81600 0.90001 1.90626 1.41966 1.65272 1.48862 1.46170 1.56296 1.13221 1.20366 1.18490 0.93573 0.91935 0.81488 1.21661 1.36555 0.97125 1.03755 0.89662 1.26096 0.95001 1.04163 0.94552 1.70154 1.41191 1.38803 1.06998 0.85099 0.77937 0.77181 0.78921 1.17458 1.20561 1.20511 1.21179 1.01770 0.88913 0.91255 1.19731 0.94260 0.95494 0.97528 1.21315 1.00635 0.93604 0.98098 1.21330 0.96626 0.95811 0.98846 1.21652 0.94341 1.00889 1.00522 1.18585 0.86368 0.91845 0.98481 1.84795 1.29485 1.82789 1.35493 1.21437 0.96958 0.95561 1.02735 0.91533 0.92953 0.94402 0.84895 0.89344 0.75568 0.99785 0.99740 0.92304 0.87606 0.92146 0.84721 0.83515 0.84180 0.73266 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.78 127.69 1.12 1.88 16 2 N -0.54 -14.60 4.49 -931.62 -4.18 -18.79 16 3 C 0.05 1.29 5.45 85.56 0.47 1.75 16 4 C 0.49 19.63 7.52 87.66 0.66 20.29 16 5 O -0.59 -29.63 14.33 -3.03 -0.04 -29.68 16 6 N -0.71 -29.69 5.55 -466.78 -2.59 -32.28 16 7 C 0.27 14.85 5.43 85.63 0.46 15.31 16 8 C -0.55 -30.10 9.28 25.60 0.24 -29.86 16 9 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 10 C 0.00 0.07 5.46 84.65 0.46 0.53 16 11 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 12 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 13 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 C 0.10 1.79 5.12 85.56 0.44 2.23 16 17 C -0.07 -1.43 4.88 -19.88 -0.10 -1.52 16 18 C -0.12 -2.31 9.70 22.28 0.22 -2.09 16 19 C -0.11 -1.90 10.04 22.25 0.22 -1.67 16 20 C -0.16 -2.81 9.99 22.37 0.22 -2.59 16 21 C 0.09 1.81 6.70 22.51 0.15 1.96 16 22 O -0.51 -8.96 13.50 -92.48 -1.25 -10.21 16 23 C -0.15 -3.01 7.90 22.36 0.18 -2.83 16 24 H 0.07 1.94 6.17 -2.38 -0.01 1.93 16 25 H 0.05 1.98 5.82 -2.39 -0.01 1.97 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.13 2.58 7.93 -2.39 -0.02 2.56 16 28 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 29 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.11 1.56 7.87 -2.39 -0.02 1.55 16 34 H 0.06 0.94 8.06 -2.39 -0.02 0.93 16 35 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.41 2.79 9.06 -74.05 -0.67 2.12 16 39 H 0.13 2.41 8.03 -2.91 -0.02 2.39 16 Total: -1.00 -77.99 332.17 -1.38 -79.38 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.37 Total: 20.38 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.74 Total: 3.39 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -6.49 Total: -107.63 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.29 Total: -39.89 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -77.99 -1.38 -79.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748815948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds