Wall clock time and date at job start Tue Mar 31 2020 01:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28834 * 125.15705 * 2 1 4 4 C 1.30123 * 110.79694 * 180.20042 * 3 2 1 5 5 C 1.40054 * 107.74343 * 359.84814 * 4 3 2 6 6 C 1.37050 * 125.16123 * 179.79929 * 2 1 3 7 7 C 1.47010 * 127.05030 * 359.97438 * 6 2 1 8 8 O 1.21553 * 119.99918 * 179.68022 * 7 6 2 9 9 O 1.34822 * 119.99823 * 359.95345 * 7 6 2 10 10 C 1.45201 * 116.99797 * 179.72406 * 9 7 6 11 11 C 1.53000 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00421 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47288 * 59.99586 * 16 14 12 18 18 H 1.48498 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46719 * 299.99051 * 16 14 12 20 20 C 1.50384 * 124.21557 * 179.70112 * 5 4 3 21 21 C 1.53501 * 108.12428 * 343.85199 * 20 5 4 22 22 C 1.53041 * 109.68256 * 50.00344 * 21 20 5 23 23 C 1.50868 * 129.04030 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47259 * 270.19737 * 1 2 3 25 25 H 1.08997 * 109.47195 * 30.19542 * 1 2 3 26 26 H 1.08994 * 109.47121 * 150.20034 * 1 2 3 27 27 H 1.09003 * 109.47123 * 300.00611 * 10 9 7 28 28 H 1.09003 * 109.47144 * 59.99952 * 10 9 7 29 29 H 1.08997 * 109.46763 * 300.00134 * 11 10 9 30 30 H 1.08997 * 109.46593 * 59.99941 * 11 10 9 31 31 H 0.96996 * 120.00539 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.73148 * 103.50587 * 20 5 4 33 33 H 1.09001 * 109.73561 * 224.19585 * 20 5 4 34 34 H 1.09000 * 109.43717 * 289.94310 * 21 20 5 35 35 H 1.08996 * 109.44030 * 170.06941 * 21 20 5 36 36 H 1.09000 * 109.40310 * 168.44655 * 22 21 20 37 37 H 1.09000 * 109.33155 * 48.65212 * 22 21 20 38 38 H 1.09003 * 109.72024 * 282.78344 * 23 4 3 39 39 H 1.09001 * 109.72533 * 43.39722 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2068 1.0533 0.0000 4 6 3.4674 0.7306 -0.0043 5 6 3.5500 -0.6675 -0.0038 6 6 2.2542 -1.1204 0.0039 7 6 1.8051 -2.5202 0.0094 8 8 2.6217 -3.4205 0.0066 9 8 0.4873 -2.8054 0.0119 10 6 0.1167 -4.2093 0.0110 11 6 -1.4082 -4.3342 0.0135 12 6 -1.7928 -5.7913 0.0132 13 1 -1.0263 -6.5521 0.0110 14 6 -3.1233 -6.1530 0.0147 15 7 -4.0567 -5.2265 0.0168 16 14 -3.6001 -7.9592 0.0151 17 1 -3.0482 -8.6166 1.2268 18 1 -5.0801 -8.0804 0.0174 19 1 -3.0511 -8.6162 -1.1983 20 6 4.8413 -1.4383 -0.0144 21 6 5.9659 -0.4801 -0.4308 22 6 5.8955 0.7949 0.4128 23 6 4.6786 1.6301 -0.0054 24 1 -0.3634 0.0035 1.0277 25 1 -0.3633 0.8882 -0.5168 26 1 -0.3633 -0.8917 -0.5107 27 1 0.5190 -4.6907 -0.8804 28 1 0.5227 -4.6928 0.8995 29 1 -1.8106 -3.8527 0.9047 30 1 -1.8137 -3.8508 -0.8753 31 1 -4.9927 -5.4809 0.0175 32 1 5.0432 -1.8318 0.9818 33 1 4.7741 -2.2592 -0.7283 34 1 5.8532 -0.2245 -1.4844 35 1 6.9304 -0.9640 -0.2768 36 1 6.8038 1.3786 0.2633 37 1 5.8065 0.5266 1.4655 38 1 4.8357 2.0341 -1.0055 39 1 4.5314 2.4462 0.7020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767586561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:31 Heat of formation + Delta-G solvation = -34.111028 kcal Electronic energy + Delta-G solvation = -21404.846450 eV Core-core repulsion = 18120.323032 eV Total energy + Delta-G solvation = -3284.523418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.71082 -39.72799 -37.21914 -36.18140 -33.45063 -32.78912 -31.94510 -30.45676 -29.30429 -27.32210 -25.37821 -23.67152 -23.21276 -22.07245 -21.00374 -19.95433 -19.29274 -17.57101 -16.64924 -16.55940 -16.00098 -15.71788 -15.52942 -14.91335 -14.60658 -14.16678 -13.97929 -13.59708 -13.32350 -12.95278 -12.89764 -12.69715 -12.43038 -12.39555 -11.86591 -11.47912 -11.34627 -11.11510 -11.00873 -10.97140 -10.81667 -10.77309 -10.38661 -10.29878 -9.77209 -9.72666 -9.39524 -9.11676 -8.63311 -8.50384 -6.16902 -4.21567 1.15183 2.43397 2.47792 2.96588 3.09701 3.26377 3.30666 3.34080 4.17407 4.33682 4.65583 4.70838 4.76950 5.01445 5.03367 5.18690 5.20041 5.27028 5.36081 5.43216 5.46074 5.52144 5.70683 5.73612 5.82268 5.92154 5.94652 5.98957 5.99605 6.18170 6.19637 6.48714 6.52834 6.69604 6.80288 7.45082 7.51905 7.77831 7.93326 8.09934 8.16513 8.83436 9.43379 10.94516 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036835 B = 0.003452 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.969467 B = 8109.488177 C = 8804.697299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.272 5.272 3 N -0.262 5.262 4 C 0.019 3.981 5 C -0.122 4.122 6 C -0.016 4.016 7 C 0.533 3.467 8 O -0.496 6.496 9 O -0.358 6.358 10 C 0.075 3.925 11 C 0.026 3.974 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.046 4.046 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.028 4.028 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.984 13.454 -0.147 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.062 5.062 3 N -0.095 5.095 4 C -0.140 4.140 5 C -0.133 4.133 6 C -0.139 4.139 7 C 0.375 3.625 8 O -0.383 6.383 9 O -0.274 6.274 10 C 0.003 3.997 11 C -0.011 4.011 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.084 4.084 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.067 4.067 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.060 14.030 -0.146 20.583 hybrid contribution -0.131 -1.781 0.039 1.786 sum 14.929 12.249 -0.107 19.311 Atomic orbital electron populations 1.22418 0.71821 1.06169 1.05132 1.45932 1.07899 1.01535 1.50838 1.72810 1.03643 1.13767 1.19312 1.21856 0.92091 0.93096 1.06909 1.20399 0.93236 0.94146 1.05531 1.20206 0.91138 0.86595 1.15979 1.19634 0.82202 0.86853 0.73766 1.90844 1.54918 1.46620 1.45925 1.86587 1.23550 1.34258 1.83017 1.23747 1.00381 0.74230 1.01310 1.19174 0.85314 0.97802 0.98822 1.20924 0.92186 0.91045 1.52502 0.92234 1.24972 0.96342 0.97993 0.94739 1.69949 1.00448 1.32863 1.49592 0.86520 0.77355 0.84531 0.78843 1.20021 1.21096 1.20019 1.20064 0.88851 0.96784 1.02694 1.21626 0.98254 0.95594 1.00120 1.21589 0.97089 0.96368 1.00479 1.19983 0.88562 0.95703 1.02486 0.89438 0.88699 0.86815 0.91998 0.91981 0.95329 0.95358 0.92591 0.90338 0.89831 0.91639 0.91225 0.91040 0.91483 0.90195 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.82 59.84 0.65 1.69 16 2 N -0.27 -4.10 3.77 -64.12 -0.24 -4.34 16 3 N -0.26 -3.87 11.89 33.64 0.40 -3.47 16 4 C 0.02 0.25 7.13 -82.55 -0.59 -0.34 16 5 C -0.12 -1.78 6.00 -104.45 -0.63 -2.40 16 6 C -0.02 -0.26 6.94 -82.33 -0.57 -0.83 16 7 C 0.53 9.81 7.93 34.29 0.27 10.09 16 8 O -0.50 -9.87 15.58 -19.31 -0.30 -10.17 16 9 O -0.36 -6.88 7.72 -40.83 -0.32 -7.19 16 10 C 0.08 1.62 5.42 37.16 0.20 1.82 16 11 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 C -0.05 -0.56 5.52 -27.78 -0.15 -0.71 16 21 C -0.12 -1.05 5.88 -26.45 -0.16 -1.20 16 22 C -0.12 -0.93 5.85 -26.50 -0.16 -1.08 16 23 C -0.03 -0.27 6.31 -27.59 -0.17 -0.44 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.11 1.54 6.17 -51.93 -0.32 1.22 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.10 7.67 -51.93 -0.40 0.70 16 34 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.56 8.10 -51.93 -0.42 0.13 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -31.04 326.51 -7.44 -38.48 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.75 Total: -3.15 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.87 Total: -6.09 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.89 Total: -32.81 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.62 Total: -17.36 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.04 -7.44 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767586561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.367 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds