Wall clock time and date at job start Tue Mar 31 2020 01:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28834 * 125.15705 * 2 1 4 4 C 1.30123 * 110.79694 * 180.20042 * 3 2 1 5 5 C 1.40054 * 107.74343 * 359.84814 * 4 3 2 6 6 C 1.37050 * 125.16123 * 179.79929 * 2 1 3 7 7 C 1.47010 * 127.05030 * 359.97438 * 6 2 1 8 8 O 1.21553 * 119.99918 * 179.68022 * 7 6 2 9 9 O 1.34822 * 119.99823 * 359.95345 * 7 6 2 10 10 C 1.45201 * 116.99797 * 179.72406 * 9 7 6 11 11 C 1.53000 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00421 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47288 * 59.99586 * 16 14 12 18 18 H 1.48498 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46719 * 299.99051 * 16 14 12 20 20 C 1.50384 * 124.21557 * 179.70112 * 5 4 3 21 21 C 1.53501 * 108.12428 * 343.85199 * 20 5 4 22 22 C 1.53041 * 109.68256 * 50.00344 * 21 20 5 23 23 C 1.50868 * 129.04030 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47259 * 270.19737 * 1 2 3 25 25 H 1.08997 * 109.47195 * 30.19542 * 1 2 3 26 26 H 1.08994 * 109.47121 * 150.20034 * 1 2 3 27 27 H 1.09003 * 109.47123 * 300.00611 * 10 9 7 28 28 H 1.09003 * 109.47144 * 59.99952 * 10 9 7 29 29 H 1.08997 * 109.46763 * 300.00134 * 11 10 9 30 30 H 1.08997 * 109.46593 * 59.99941 * 11 10 9 31 31 H 0.96996 * 120.00539 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.73148 * 103.50587 * 20 5 4 33 33 H 1.09001 * 109.73561 * 224.19585 * 20 5 4 34 34 H 1.09000 * 109.43717 * 289.94310 * 21 20 5 35 35 H 1.08996 * 109.44030 * 170.06941 * 21 20 5 36 36 H 1.09000 * 109.40310 * 168.44655 * 22 21 20 37 37 H 1.09000 * 109.33155 * 48.65212 * 22 21 20 38 38 H 1.09003 * 109.72024 * 282.78344 * 23 4 3 39 39 H 1.09001 * 109.72533 * 43.39722 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2068 1.0533 0.0000 4 6 3.4674 0.7306 -0.0043 5 6 3.5500 -0.6675 -0.0038 6 6 2.2542 -1.1204 0.0039 7 6 1.8051 -2.5202 0.0094 8 8 2.6217 -3.4205 0.0066 9 8 0.4873 -2.8054 0.0119 10 6 0.1167 -4.2093 0.0110 11 6 -1.4082 -4.3342 0.0135 12 6 -1.7928 -5.7913 0.0132 13 1 -1.0263 -6.5521 0.0110 14 6 -3.1233 -6.1530 0.0147 15 7 -4.0567 -5.2265 0.0168 16 14 -3.6001 -7.9592 0.0151 17 1 -3.0482 -8.6166 1.2268 18 1 -5.0801 -8.0804 0.0174 19 1 -3.0511 -8.6162 -1.1983 20 6 4.8413 -1.4383 -0.0144 21 6 5.9659 -0.4801 -0.4308 22 6 5.8955 0.7949 0.4128 23 6 4.6786 1.6301 -0.0054 24 1 -0.3634 0.0035 1.0277 25 1 -0.3633 0.8882 -0.5168 26 1 -0.3633 -0.8917 -0.5107 27 1 0.5190 -4.6907 -0.8804 28 1 0.5227 -4.6928 0.8995 29 1 -1.8106 -3.8527 0.9047 30 1 -1.8137 -3.8508 -0.8753 31 1 -4.9927 -5.4809 0.0175 32 1 5.0432 -1.8318 0.9818 33 1 4.7741 -2.2592 -0.7283 34 1 5.8532 -0.2245 -1.4844 35 1 6.9304 -0.9640 -0.2768 36 1 6.8038 1.3786 0.2633 37 1 5.8065 0.5266 1.4655 38 1 4.8357 2.0341 -1.0055 39 1 4.5314 2.4462 0.7020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767586561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:31 Heat of formation + Delta-G solvation = -51.057115 kcal Electronic energy + Delta-G solvation = -21405.581287 eV Core-core repulsion = 18120.323032 eV Total energy + Delta-G solvation = -3285.258255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.83450 -41.26925 -38.16615 -37.67187 -35.48378 -33.87002 -32.95973 -32.34478 -30.36086 -28.30562 -27.24239 -25.01759 -24.27476 -22.96890 -22.89145 -21.30190 -20.24101 -18.97032 -18.33430 -17.95967 -17.73860 -17.04175 -16.74526 -16.46575 -15.75436 -15.23400 -15.11865 -14.80018 -14.68775 -14.41046 -14.10095 -13.83440 -13.65434 -13.48530 -13.20837 -13.03897 -12.73315 -12.67889 -12.62434 -12.40762 -11.98058 -11.72556 -11.69591 -11.57070 -11.53972 -11.43417 -11.20264 -10.62292 -10.28574 -9.70191 -8.28863 -6.41688 -0.14763 1.26569 1.38467 1.40855 1.43601 1.50536 1.57599 1.73507 2.38410 3.06088 3.20109 3.39540 3.86041 3.99422 4.10106 4.10492 4.17881 4.18562 4.26524 4.28326 4.44364 4.58249 4.61667 4.65889 4.68842 4.70285 5.00413 5.07083 5.11760 5.18179 5.22987 5.31728 5.39790 5.44070 5.50758 5.51465 5.65914 5.70104 6.04169 6.46150 6.71256 6.91108 7.28132 8.83266 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036835 B = 0.003452 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.969467 B = 8109.488177 C = 8804.697299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.278 5.278 3 N -0.269 5.269 4 C 0.019 3.981 5 C -0.122 4.122 6 C -0.047 4.047 7 C 0.535 3.465 8 O -0.515 6.515 9 O -0.356 6.356 10 C 0.091 3.909 11 C 0.034 3.966 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.050 4.050 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.029 4.029 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.009 0.991 30 H 0.010 0.990 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.667 14.041 -0.148 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.068 5.068 3 N -0.103 5.103 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.170 4.170 7 C 0.379 3.621 8 O -0.403 6.403 9 O -0.273 6.273 10 C 0.018 3.982 11 C -0.003 4.003 12 C -0.590 4.590 13 H 0.083 0.917 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.088 4.088 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.068 4.068 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.753 14.628 -0.148 22.241 hybrid contribution -0.614 -1.864 0.038 1.963 sum 16.139 12.765 -0.110 20.577 Atomic orbital electron populations 1.22528 0.70958 1.06537 1.05779 1.46131 1.08527 1.01177 1.50995 1.72821 1.04387 1.13614 1.19453 1.22597 0.92740 0.93243 1.05347 1.20870 0.93320 0.95138 1.03960 1.20173 0.92383 0.85844 1.18626 1.19936 0.81370 0.87783 0.72991 1.90822 1.55040 1.47421 1.47054 1.86589 1.24603 1.32737 1.83368 1.23303 0.97952 0.75562 1.01378 1.18966 0.87655 0.96765 0.96932 1.21337 0.92811 0.92159 1.52670 0.91710 1.25908 0.96255 1.02810 0.94055 1.70066 1.00889 1.35176 1.50267 0.85418 0.77163 0.78710 0.79296 1.19122 1.20521 1.19100 1.20181 0.89170 0.97090 1.02327 1.21634 0.97621 0.95456 1.00363 1.21607 0.97660 0.95903 0.99893 1.20235 0.87113 0.95542 1.03909 0.88678 0.86288 0.88423 0.91859 0.91878 0.97216 0.97186 0.92313 0.90369 0.91379 0.91413 0.89196 0.87951 0.91856 0.88605 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.03 10.82 127.77 1.38 3.41 16 2 N -0.28 -8.35 3.77 -356.79 -1.34 -9.70 16 3 N -0.27 -7.67 11.89 -47.47 -0.56 -8.24 16 4 C 0.02 0.47 7.13 43.31 0.31 0.78 16 5 C -0.12 -3.47 6.00 -19.75 -0.12 -3.58 16 6 C -0.05 -1.57 6.94 40.40 0.28 -1.29 16 7 C 0.54 20.21 7.93 70.12 0.56 20.76 16 8 O -0.52 -20.93 15.58 19.66 0.31 -20.63 16 9 O -0.36 -14.16 7.72 -57.34 -0.44 -14.60 16 10 C 0.09 3.99 5.42 71.98 0.39 4.38 16 11 C 0.03 1.76 5.35 29.85 0.16 1.92 16 12 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 13 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 14 C 0.01 0.50 5.46 84.65 0.46 0.97 16 15 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 16 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.05 -1.16 5.52 29.92 0.17 -1.00 16 21 C -0.11 -1.71 5.88 30.78 0.18 -1.53 16 22 C -0.11 -1.40 5.85 30.74 0.18 -1.22 16 23 C -0.03 -0.46 6.31 30.04 0.19 -0.27 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.10 2.77 6.17 -2.39 -0.01 2.75 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.80 7.67 -2.39 -0.02 1.78 16 34 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.90 326.51 5.68 -61.22 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.04 Total: 7.97 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.37 Total: -7.08 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.62 Total: -71.87 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.14 Total: -35.23 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.90 5.68 -61.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767586561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.162 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds