Wall clock time and date at job start Tue Mar 31 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36429 * 124.80995 * 2 1 4 4 C 1.34436 * 109.08286 * 179.97438 * 3 2 1 5 5 C 1.46739 * 106.37623 * 359.97438 * 4 3 2 6 6 C 1.47116 * 127.02502 * 179.97438 * 5 4 3 7 7 O 1.21539 * 120.00173 * 180.02562 * 6 5 4 8 8 O 1.34790 * 119.99451 * 0.02562 * 6 5 4 9 9 C 1.45204 * 116.99566 * 179.97438 * 8 6 5 10 10 C 1.53034 * 109.46350 * 270.03192 * 9 8 6 11 11 C 1.53185 * 109.31475 * 178.60020 * 10 9 8 12 12 N 1.46928 * 108.76503 * 54.65453 * 11 10 9 13 13 C 1.36940 * 120.62960 * 126.40445 * 12 11 10 14 14 H 1.07999 * 120.00088 * 332.60795 * 13 12 11 15 15 C 1.38808 * 119.99651 * 152.61192 * 13 12 11 16 16 N 1.31622 * 119.99979 * 159.34284 * 15 13 12 17 17 Si 1.86801 * 120.00262 * 339.34288 * 15 13 12 18 18 H 1.48499 * 109.47090 * 92.94489 * 17 15 13 19 19 H 1.48503 * 109.46899 * 212.94523 * 17 15 13 20 20 H 1.48503 * 109.46848 * 332.94377 * 17 15 13 21 21 C 1.46925 * 118.73843 * 306.38458 * 12 11 10 22 22 C 1.53038 * 109.45837 * 149.97657 * 9 8 6 23 23 C 1.34627 * 124.80939 * 180.30791 * 2 1 3 24 24 H 1.09004 * 109.46613 * 90.02625 * 1 2 3 25 25 H 1.08997 * 109.47169 * 210.02128 * 1 2 3 26 26 H 1.08996 * 109.47078 * 330.03234 * 1 2 3 27 27 H 1.07992 * 125.45612 * 359.97438 * 3 2 1 28 28 H 1.08004 * 126.80730 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.45580 * 30.00574 * 9 8 6 30 30 H 1.09004 * 109.49570 * 298.56813 * 10 9 8 31 31 H 1.08998 * 109.49860 * 58.66047 * 10 9 8 32 32 H 1.08996 * 109.59990 * 294.86977 * 11 10 9 33 33 H 1.09002 * 109.70396 * 174.49951 * 11 10 9 34 34 H 0.96996 * 120.00127 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.58565 * 293.82037 * 21 12 11 36 36 H 1.09004 * 109.70410 * 173.46164 * 21 12 11 37 37 H 1.09009 * 109.49433 * 301.33687 * 22 9 8 38 38 H 1.08998 * 109.49895 * 61.40042 * 22 9 8 39 39 H 1.08005 * 125.89856 * 0.02947 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2438 1.1202 0.0000 4 6 3.5378 0.7558 0.0006 5 6 3.5545 -0.7115 0.0016 6 6 4.7390 -1.5841 0.0019 7 8 4.6040 -2.7919 0.0023 8 8 5.9738 -1.0438 0.0018 9 6 7.0963 -1.9649 0.0028 10 6 7.4896 -2.2880 1.4460 11 6 8.6510 -3.2868 1.4432 12 7 9.7439 -2.7386 0.6285 13 6 11.0090 -2.6288 1.1412 14 1 11.1521 -2.5107 2.2051 15 6 12.1073 -2.6691 0.2933 16 7 13.2609 -2.1720 0.6866 17 14 11.9483 -3.4288 -1.4058 18 1 11.6170 -2.3697 -2.3926 19 1 13.2326 -4.0721 -1.7825 20 1 10.8688 -4.4486 -1.3929 21 6 9.4538 -2.3108 -0.7469 22 6 8.2831 -1.3231 -0.7194 23 6 2.2335 -1.1053 -0.0059 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5133 27 1 1.8792 2.1367 -0.0004 28 1 4.3951 1.4127 0.0011 29 1 6.8125 -2.8836 -0.5106 30 1 7.7974 -1.3732 1.9526 31 1 6.6368 -2.7235 1.9667 32 1 8.3180 -4.2336 1.0181 33 1 9.0006 -3.4469 2.4632 34 1 14.0285 -2.2005 0.0943 35 1 9.1862 -3.1780 -1.3504 36 1 10.3315 -1.8253 -1.1736 37 1 7.9951 -1.0719 -1.7403 38 1 8.5830 -0.4173 -0.1925 39 1 1.8767 -2.1247 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770784331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:52 Heat of formation + Delta-G solvation = -9.517830 kcal Electronic energy + Delta-G solvation = -21422.006157 eV Core-core repulsion = 18138.549180 eV Total energy + Delta-G solvation = -3283.456977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.40843 -39.85735 -37.54248 -35.71276 -33.16852 -32.54465 -30.55988 -30.31642 -29.40702 -27.27052 -25.15151 -23.37512 -22.71380 -21.65668 -20.53785 -19.70465 -19.48385 -18.02699 -16.97479 -16.64216 -15.86478 -15.51163 -15.32513 -15.00233 -14.25812 -14.12362 -13.74378 -13.50367 -13.32449 -13.14364 -12.93289 -12.76955 -12.62810 -12.36616 -12.13898 -11.96681 -11.77371 -11.15284 -10.78972 -10.65430 -10.42585 -10.29167 -10.05590 -9.77154 -9.65793 -9.35158 -8.89036 -8.61280 -8.59665 -6.97766 -5.92169 -3.28242 1.46602 2.19638 2.41981 3.19076 3.34736 3.39805 3.51654 3.55302 4.31463 4.55746 4.61198 4.65613 4.71856 4.91572 4.95751 5.13640 5.24909 5.25531 5.33031 5.44552 5.65146 5.69990 5.84233 5.86531 6.07152 6.20722 6.28670 6.35969 6.45021 6.47843 6.61310 6.64939 6.73257 6.74897 6.84470 6.90486 7.05389 7.98079 8.17134 8.35629 8.95760 9.74214 10.11490 11.23760 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044589 B = 0.003452 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.813072 B = 8109.832203 C = 8147.310393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.445 5.445 3 C -0.029 4.029 4 C -0.142 4.142 5 C -0.221 4.221 6 C 0.537 3.463 7 O -0.527 6.527 8 O -0.349 6.349 9 C 0.099 3.901 10 C -0.147 4.147 11 C 0.152 3.848 12 N -0.606 5.606 13 C -0.260 4.260 14 H 0.087 0.913 15 C 0.023 3.977 16 N -0.908 5.908 17 Si 0.880 3.120 18 H -0.287 1.287 19 H -0.303 1.303 20 H -0.270 1.270 21 C 0.129 3.871 22 C -0.129 4.129 23 C 0.079 3.921 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.169 0.831 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.430 6.189 -2.388 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.120 5.120 3 C -0.154 4.154 4 C -0.165 4.165 5 C -0.229 4.229 6 C 0.384 3.616 7 O -0.418 6.418 8 O -0.265 6.265 9 C 0.045 3.955 10 C -0.187 4.187 11 C 0.026 3.974 12 N -0.330 5.330 13 C -0.388 4.388 14 H 0.105 0.895 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.711 3.289 18 H -0.215 1.215 19 H -0.231 1.231 20 H -0.195 1.195 21 C 0.003 3.997 22 C -0.168 4.168 23 C -0.057 4.057 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.186 0.814 28 H 0.171 0.829 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -26.588 5.894 -2.393 27.338 hybrid contribution -0.016 -0.455 -1.007 1.105 sum -26.603 5.439 -3.400 27.365 Atomic orbital electron populations 1.22145 0.76636 1.04813 1.03677 1.43603 1.06901 1.05936 1.55608 1.21778 0.90543 0.91251 1.11836 1.22179 0.96209 0.93150 1.04955 1.19746 0.90232 0.93367 1.19564 1.20092 0.83287 0.86135 0.72123 1.90804 1.87298 1.15818 1.47865 1.86617 1.14573 1.41876 1.83482 1.22802 0.82690 0.91960 0.98032 1.22447 0.99448 1.01752 0.95028 1.20884 0.87163 0.92992 0.96347 1.44431 1.06578 1.71540 1.10462 1.18937 0.80436 1.44827 0.94576 0.89539 1.25278 0.95052 0.99319 0.97926 1.69838 1.01751 1.46102 1.37394 0.86983 0.76362 0.80281 0.85321 1.21493 1.23074 1.19464 1.21364 0.95853 0.94842 0.87631 1.22219 0.94108 1.01025 0.99443 1.22032 0.89384 0.91882 1.02410 0.90519 0.89492 0.89417 0.81415 0.82915 0.90339 0.90928 0.92200 0.95588 0.91197 0.92757 0.95413 0.90127 0.91944 0.90473 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.03 59.85 0.66 0.89 16 2 N -0.44 -3.54 3.08 -124.24 -0.38 -3.92 16 3 C -0.03 -0.24 11.32 -16.85 -0.19 -0.43 16 4 C -0.14 -1.61 11.00 -37.49 -0.41 -2.02 16 5 C -0.22 -3.00 6.33 -103.01 -0.65 -3.65 16 6 C 0.54 9.09 7.92 34.33 0.27 9.37 16 7 O -0.53 -9.98 16.18 -19.30 -0.31 -10.29 16 8 O -0.35 -6.18 9.78 -40.74 -0.40 -6.58 16 9 C 0.10 1.86 2.42 -26.69 -0.06 1.80 16 10 C -0.15 -2.78 5.72 -26.62 -0.15 -2.93 16 11 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 12 N -0.61 -14.94 2.77 -172.33 -0.48 -15.41 16 13 C -0.26 -7.39 10.04 -15.06 -0.15 -7.54 16 14 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 15 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 16 N -0.91 -28.12 13.97 55.49 0.78 -27.34 16 17 Si 0.88 22.66 24.35 -169.99 -4.14 18.52 16 18 H -0.29 -7.09 6.62 56.52 0.37 -6.71 16 19 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 20 H -0.27 -6.86 6.63 56.52 0.38 -6.48 16 21 C 0.13 2.92 4.20 -3.71 -0.02 2.90 16 22 C -0.13 -2.48 5.74 -26.61 -0.15 -2.63 16 23 C 0.08 0.83 11.18 -16.47 -0.18 0.64 16 24 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 0.19 8.13 -51.93 -0.42 -0.23 16 26 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 27 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 36 H 0.08 1.96 4.50 -51.93 -0.23 1.72 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -34.61 321.45 -6.90 -41.50 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.65 Total: -1.47 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.16 Total: 0.15 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.09 Total: -46.68 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.71 Total: -16.87 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.14 Total: 18.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.61 -6.90 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770784331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.983 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds