Wall clock time and date at job start Tue Mar 31 2020 01:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36429 * 124.80995 * 2 1 4 4 C 1.34436 * 109.08286 * 179.97438 * 3 2 1 5 5 C 1.46739 * 106.37623 * 359.97438 * 4 3 2 6 6 C 1.47116 * 127.02502 * 179.97438 * 5 4 3 7 7 O 1.21539 * 120.00173 * 180.02562 * 6 5 4 8 8 O 1.34790 * 119.99451 * 0.02562 * 6 5 4 9 9 C 1.45204 * 116.99566 * 179.97438 * 8 6 5 10 10 C 1.53034 * 109.46350 * 270.03192 * 9 8 6 11 11 C 1.53185 * 109.31475 * 178.60020 * 10 9 8 12 12 N 1.46928 * 108.76503 * 54.65453 * 11 10 9 13 13 C 1.36940 * 120.62960 * 126.40445 * 12 11 10 14 14 H 1.07999 * 120.00088 * 332.60795 * 13 12 11 15 15 C 1.38808 * 119.99651 * 152.61192 * 13 12 11 16 16 N 1.31622 * 119.99979 * 159.34284 * 15 13 12 17 17 Si 1.86801 * 120.00262 * 339.34288 * 15 13 12 18 18 H 1.48499 * 109.47090 * 92.94489 * 17 15 13 19 19 H 1.48503 * 109.46899 * 212.94523 * 17 15 13 20 20 H 1.48503 * 109.46848 * 332.94377 * 17 15 13 21 21 C 1.46925 * 118.73843 * 306.38458 * 12 11 10 22 22 C 1.53038 * 109.45837 * 149.97657 * 9 8 6 23 23 C 1.34627 * 124.80939 * 180.30791 * 2 1 3 24 24 H 1.09004 * 109.46613 * 90.02625 * 1 2 3 25 25 H 1.08997 * 109.47169 * 210.02128 * 1 2 3 26 26 H 1.08996 * 109.47078 * 330.03234 * 1 2 3 27 27 H 1.07992 * 125.45612 * 359.97438 * 3 2 1 28 28 H 1.08004 * 126.80730 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.45580 * 30.00574 * 9 8 6 30 30 H 1.09004 * 109.49570 * 298.56813 * 10 9 8 31 31 H 1.08998 * 109.49860 * 58.66047 * 10 9 8 32 32 H 1.08996 * 109.59990 * 294.86977 * 11 10 9 33 33 H 1.09002 * 109.70396 * 174.49951 * 11 10 9 34 34 H 0.96996 * 120.00127 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.58565 * 293.82037 * 21 12 11 36 36 H 1.09004 * 109.70410 * 173.46164 * 21 12 11 37 37 H 1.09009 * 109.49433 * 301.33687 * 22 9 8 38 38 H 1.08998 * 109.49895 * 61.40042 * 22 9 8 39 39 H 1.08005 * 125.89856 * 0.02947 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2438 1.1202 0.0000 4 6 3.5378 0.7558 0.0006 5 6 3.5545 -0.7115 0.0016 6 6 4.7390 -1.5841 0.0019 7 8 4.6040 -2.7919 0.0023 8 8 5.9738 -1.0438 0.0018 9 6 7.0963 -1.9649 0.0028 10 6 7.4896 -2.2880 1.4460 11 6 8.6510 -3.2868 1.4432 12 7 9.7439 -2.7386 0.6285 13 6 11.0090 -2.6288 1.1412 14 1 11.1521 -2.5107 2.2051 15 6 12.1073 -2.6691 0.2933 16 7 13.2609 -2.1720 0.6866 17 14 11.9483 -3.4288 -1.4058 18 1 11.6170 -2.3697 -2.3926 19 1 13.2326 -4.0721 -1.7825 20 1 10.8688 -4.4486 -1.3929 21 6 9.4538 -2.3108 -0.7469 22 6 8.2831 -1.3231 -0.7194 23 6 2.2335 -1.1053 -0.0059 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5133 27 1 1.8792 2.1367 -0.0004 28 1 4.3951 1.4127 0.0011 29 1 6.8125 -2.8836 -0.5106 30 1 7.7974 -1.3732 1.9526 31 1 6.6368 -2.7235 1.9667 32 1 8.3180 -4.2336 1.0181 33 1 9.0006 -3.4469 2.4632 34 1 14.0285 -2.2005 0.0943 35 1 9.1862 -3.1780 -1.3504 36 1 10.3315 -1.8253 -1.1736 37 1 7.9951 -1.0719 -1.7403 38 1 8.5830 -0.4173 -0.1925 39 1 1.8767 -2.1247 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770784331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:51 Heat of formation + Delta-G solvation = -30.891333 kcal Electronic energy + Delta-G solvation = -21422.932982 eV Core-core repulsion = 18138.549180 eV Total energy + Delta-G solvation = -3284.383801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.18689 -41.16821 -39.19150 -37.19998 -34.63474 -33.72769 -32.38681 -32.06267 -30.20475 -28.00426 -26.86093 -24.83722 -24.21023 -23.26086 -21.41237 -21.18059 -20.61642 -19.03026 -18.80029 -18.03305 -17.20571 -16.89346 -16.41831 -16.09355 -15.97669 -15.42304 -15.21300 -14.78204 -14.63472 -14.51366 -14.22455 -13.94679 -13.85139 -13.56007 -13.28405 -13.10278 -13.01549 -12.73956 -12.58319 -12.40283 -12.19118 -12.03451 -11.63779 -11.57478 -11.43211 -11.09958 -10.73837 -9.64465 -9.36828 -9.02412 -8.17387 -5.51122 0.46776 1.30140 1.42144 1.45339 1.51196 1.60812 2.16421 2.30382 2.41031 3.01503 3.27628 3.69703 3.79844 3.85725 3.96352 4.03282 4.08725 4.21377 4.22774 4.38572 4.48080 4.51327 4.55582 4.68440 4.73794 4.77810 4.85917 4.90340 4.96645 4.99826 5.09810 5.12111 5.27999 5.60217 5.67339 5.84009 6.00608 6.11367 6.29616 6.86482 6.88962 7.57584 7.98227 9.02227 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044589 B = 0.003452 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.813072 B = 8109.832203 C = 8147.310393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.436 5.436 3 C -0.009 4.009 4 C -0.171 4.171 5 C -0.267 4.267 6 C 0.533 3.467 7 O -0.556 6.556 8 O -0.351 6.351 9 C 0.104 3.896 10 C -0.136 4.136 11 C 0.150 3.850 12 N -0.620 5.620 13 C -0.253 4.253 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.954 5.954 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.308 1.308 20 H -0.263 1.263 21 C 0.124 3.876 22 C -0.119 4.119 23 C 0.088 3.912 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.207 0.793 28 H 0.149 0.851 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.052 6.886 -3.611 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.109 5.109 3 C -0.135 4.135 4 C -0.194 4.194 5 C -0.275 4.275 6 C 0.382 3.618 7 O -0.450 6.450 8 O -0.268 6.268 9 C 0.049 3.951 10 C -0.175 4.175 11 C 0.025 3.975 12 N -0.345 5.345 13 C -0.382 4.382 14 H 0.073 0.927 15 C -0.227 4.227 16 N -0.600 5.600 17 Si 0.771 3.229 18 H -0.195 1.195 19 H -0.237 1.237 20 H -0.187 1.187 21 C -0.001 4.001 22 C -0.158 4.158 23 C -0.050 4.050 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.223 0.777 28 H 0.167 0.833 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -30.285 6.613 -3.623 31.209 hybrid contribution 0.921 -0.605 -0.541 1.228 sum -29.363 6.008 -4.164 30.259 Atomic orbital electron populations 1.22540 0.73466 1.06713 1.05271 1.43982 1.08727 1.04978 1.53261 1.22296 0.89565 0.92811 1.08846 1.22295 0.97793 0.92207 1.07058 1.19813 0.90091 0.94242 1.23361 1.20710 0.83505 0.86378 0.71232 1.90771 1.87448 1.17014 1.49732 1.86620 1.14893 1.41432 1.83815 1.22577 0.83111 0.91936 0.97470 1.22278 0.98828 1.00831 0.95552 1.20998 0.86794 0.93859 0.95848 1.44539 1.05963 1.72355 1.11599 1.18868 0.82390 1.43513 0.93424 0.92714 1.25890 0.94723 1.00043 1.02031 1.69960 1.02726 1.48067 1.39239 0.85964 0.76016 0.79698 0.81202 1.19522 1.23693 1.18722 1.21404 0.96506 0.95770 0.86426 1.22033 0.93118 0.99593 1.01063 1.22249 0.88707 0.93253 1.00807 0.89015 0.88153 0.87146 0.77665 0.83297 0.90850 0.91593 0.90969 0.94555 0.91371 0.92791 0.94420 0.91748 0.89400 0.91175 0.79109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 11.03 127.77 1.41 1.55 16 2 N -0.44 -5.40 3.08 -546.98 -1.69 -7.09 16 3 C -0.01 -0.12 11.32 83.11 0.94 0.82 16 4 C -0.17 -3.64 11.00 23.62 0.26 -3.38 16 5 C -0.27 -7.01 6.33 -18.82 -0.12 -7.13 16 6 C 0.53 17.87 7.92 70.15 0.56 18.43 16 7 O -0.56 -20.95 16.18 19.71 0.32 -20.63 16 8 O -0.35 -12.27 9.78 -57.02 -0.56 -12.83 16 9 C 0.10 3.80 2.42 30.62 0.07 3.88 16 10 C -0.14 -5.05 5.72 30.67 0.18 -4.87 16 11 C 0.15 6.27 6.52 86.36 0.56 6.83 16 12 N -0.62 -30.53 2.77 -699.11 -1.94 -32.47 16 13 C -0.25 -14.70 10.04 84.03 0.84 -13.86 16 14 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 15 C -0.03 -1.89 5.23 84.86 0.44 -1.45 16 16 N -0.95 -60.66 13.97 21.65 0.30 -60.36 16 17 Si 0.94 47.06 24.35 68.60 1.67 48.73 16 18 H -0.27 -12.52 6.62 99.48 0.66 -11.86 16 19 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 20 H -0.26 -12.68 6.63 99.48 0.66 -12.02 16 21 C 0.12 5.48 4.20 86.36 0.36 5.84 16 22 C -0.12 -4.45 5.74 30.67 0.18 -4.27 16 23 C 0.09 1.67 11.18 84.17 0.94 2.61 16 24 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.10 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.11 -0.18 8.13 -2.39 -0.02 -0.19 16 27 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.07 2.79 7.16 -2.39 -0.02 2.77 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.82 7.93 -2.39 -0.02 2.80 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.04 1.61 7.07 -2.39 -0.02 1.59 16 36 H 0.06 3.05 4.50 -2.39 -0.01 3.04 16 37 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -76.47 321.45 5.68 -70.79 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.94 Total: 8.85 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.63 Total: 4.99 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.32 Total: -99.92 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.24 Total: -33.45 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.67 Total: 48.73 kcal Total: -76.47 5.68 -70.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770784331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.901 kcal (2) G-P(sol) polarization free energy of solvation -76.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds