Wall clock time and date at job start Tue Mar 31 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47334 * 2 1 4 4 C 1.46508 * 119.99962 * 270.00029 * 3 2 1 5 5 C 1.50696 * 109.47067 * 269.99923 * 4 3 2 6 6 O 1.21283 * 119.99797 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99986 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99790 * 179.97438 * 7 5 4 9 9 C 1.50709 * 109.46666 * 179.97438 * 8 7 5 10 10 H 1.07993 * 120.00215 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99500 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99597 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00382 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47240 * 89.99823 * 13 11 9 15 15 H 1.48497 * 109.47152 * 210.00201 * 13 11 9 16 16 H 1.48506 * 109.46938 * 330.00216 * 13 11 9 17 17 C 1.39671 * 120.00210 * 89.99317 * 3 2 1 18 18 C 1.38978 * 120.04799 * 179.97438 * 17 3 2 19 19 C 1.38107 * 120.03702 * 180.02562 * 18 17 3 20 20 C 1.38213 * 120.12574 * 359.74472 * 19 18 17 21 21 C 1.38767 * 120.09519 * 0.51415 * 20 19 18 22 22 O 1.35905 * 120.02062 * 179.76940 * 21 20 19 23 23 C 1.38619 * 119.96399 * 359.48442 * 21 20 19 24 24 H 1.08999 * 109.46706 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46949 * 300.00186 * 1 2 3 26 26 H 1.09000 * 109.46482 * 60.00033 * 1 2 3 27 27 H 1.09002 * 109.47383 * 239.99656 * 2 1 3 28 28 H 1.09006 * 109.47068 * 119.99602 * 2 1 3 29 29 H 1.08997 * 109.46723 * 30.00250 * 4 3 2 30 30 H 1.09006 * 109.46871 * 149.99513 * 4 3 2 31 31 H 0.97000 * 119.99701 * 0.02562 * 7 5 4 32 32 H 1.08993 * 109.47680 * 300.00046 * 8 7 5 33 33 H 1.09001 * 109.46859 * 60.00739 * 8 7 5 34 34 H 0.97007 * 119.99664 * 180.02562 * 12 11 9 35 35 H 1.08005 * 119.98093 * 0.02562 * 18 17 3 36 36 H 1.07997 * 119.93807 * 180.02562 * 19 18 17 37 37 H 1.08005 * 119.95276 * 180.27371 * 20 19 18 38 38 H 0.96705 * 113.99576 * 269.71966 * 22 21 20 39 39 H 1.07994 * 120.06347 * 180.23140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 8 4.4237 1.1565 -1.0210 7 7 4.1387 2.3771 -2.8516 8 6 5.5225 2.1472 -3.2742 9 6 5.7733 2.8566 -4.5801 10 1 4.9813 3.4222 -5.0481 11 6 7.0139 2.7832 -5.1772 12 7 7.2329 3.4026 -6.3165 13 14 8.3836 1.8042 -4.3680 14 1 8.3423 0.4012 -4.8529 15 1 9.6951 2.4090 -4.7135 16 1 8.2022 1.8240 -2.8942 17 6 2.2511 2.0397 1.2096 18 6 2.7149 3.3498 1.2107 19 6 2.9454 4.0005 2.4068 20 6 2.7107 3.3531 3.6052 21 6 2.2527 2.0432 3.6104 22 8 2.0269 1.4065 4.7896 23 6 2.0200 1.3864 2.4120 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1411 -1.1384 31 1 3.5487 2.9200 -3.3975 32 1 6.2031 2.5321 -2.5148 33 1 5.6899 1.0780 -3.4040 34 1 8.1056 3.3507 -6.7368 35 1 2.8952 3.8593 0.2756 36 1 3.3055 5.0187 2.4058 37 1 2.8877 3.8662 4.5390 38 1 2.7943 0.9271 5.1310 39 1 1.6600 0.3682 2.4142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789455681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:27 Heat of formation + Delta-G solvation = -69.780826 kcal Electronic energy + Delta-G solvation = -21296.238260 eV Core-core repulsion = 18010.168084 eV Total energy + Delta-G solvation = -3286.070176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20800 -40.25071 -38.46056 -36.60689 -36.07007 -34.41743 -32.55181 -31.67555 -30.46290 -29.56087 -27.42891 -24.53361 -24.07899 -23.04390 -22.02159 -21.24810 -19.49316 -19.03510 -17.91051 -17.78445 -17.38940 -16.83633 -16.45196 -16.24689 -15.86988 -15.66552 -15.39419 -15.04815 -14.85028 -14.42039 -14.28108 -14.07215 -13.88918 -13.28180 -13.07964 -13.07137 -12.96722 -12.70622 -12.68351 -12.23353 -11.96346 -11.86411 -11.66591 -11.42581 -11.25703 -10.93140 -10.55482 -9.92678 -9.64550 -8.41426 -8.29296 -6.47768 0.39205 0.62771 1.30185 1.33159 1.45079 1.72008 1.92158 2.26232 2.59239 2.84328 2.94293 3.39530 3.85111 3.97392 3.98625 4.15504 4.23561 4.34960 4.37474 4.46511 4.54621 4.59880 4.71541 4.78988 4.90282 4.98548 5.01304 5.02775 5.25266 5.27519 5.35368 5.52130 5.54089 5.61750 5.78079 6.06537 6.24059 6.45402 6.53928 6.86586 6.89108 7.15358 7.42665 8.73422 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.003931 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.300102 B = 7121.831496 C = 7635.488954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 N -0.608 5.608 4 C 0.112 3.888 5 C 0.476 3.524 6 O -0.588 6.588 7 N -0.705 5.705 8 C 0.234 3.766 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.028 3.972 12 N -0.930 5.930 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.264 1.264 17 C 0.230 3.770 18 C -0.222 4.222 19 C -0.059 4.059 20 C -0.215 4.215 21 C 0.143 3.857 22 O -0.509 6.509 23 C -0.235 4.235 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.410 0.590 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.272 0.728 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.409 0.591 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -3.446 17.058 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 N -0.316 5.316 4 C -0.016 4.016 5 C 0.262 3.738 6 O -0.469 6.469 7 N -0.356 5.356 8 C 0.110 3.890 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.173 4.173 12 N -0.569 5.569 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.189 1.189 17 C 0.128 3.872 18 C -0.244 4.244 19 C -0.078 4.078 20 C -0.236 4.236 21 C 0.097 3.903 22 O -0.323 6.323 23 C -0.257 4.257 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.246 0.754 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.268 0.732 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.934 -3.770 17.174 22.435 hybrid contribution 1.341 -0.307 -0.387 1.429 sum -12.593 -4.077 16.786 21.377 Atomic orbital electron populations 1.22136 0.94243 1.02996 1.02421 1.21509 0.95035 0.81220 1.02759 1.46267 1.69817 1.13876 1.01664 1.21440 0.91243 1.01261 0.87610 1.22260 0.91943 0.79182 0.80417 1.90642 1.59861 1.41254 1.55128 1.46052 1.13924 1.52174 1.23413 1.19031 0.80904 0.95214 0.93849 1.21302 0.98823 1.32707 1.05441 0.91963 1.25569 1.00755 0.95933 0.95027 1.69979 1.24563 1.44015 1.18341 0.85892 0.79048 0.79520 0.79605 1.19028 1.19796 1.18880 1.17760 0.92199 0.91356 0.85876 1.20908 1.09402 0.94611 0.99514 1.21011 0.95610 1.00111 0.91048 1.21336 1.07328 0.95684 0.99225 1.18262 0.95861 0.91405 0.84725 1.84712 1.42143 1.69969 1.35432 1.20949 1.12383 1.01685 0.90715 0.90169 0.92913 0.91791 0.91190 0.91006 0.84611 0.85701 0.75396 0.97464 0.97415 0.91856 0.85948 0.83824 0.84455 0.73179 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.12 2.46 5.88 86.38 0.51 2.97 16 3 N -0.61 -15.10 2.09 -701.66 -1.47 -16.57 16 4 C 0.11 2.63 5.64 85.63 0.48 3.11 16 5 C 0.48 16.73 7.90 87.66 0.69 17.42 16 6 O -0.59 -26.12 16.43 -3.04 -0.05 -26.17 16 7 N -0.70 -26.70 5.55 -466.78 -2.59 -29.29 16 8 C 0.23 11.32 4.50 85.64 0.39 11.70 16 9 C -0.54 -29.59 9.83 25.60 0.25 -29.34 16 10 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 11 C 0.03 1.55 5.47 84.65 0.46 2.01 16 12 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 13 Si 0.94 44.03 27.47 68.60 1.88 45.91 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 17 C 0.23 6.18 6.55 38.20 0.25 6.43 16 18 C -0.22 -5.84 9.20 22.42 0.21 -5.64 16 19 C -0.06 -1.38 10.03 22.23 0.22 -1.15 16 20 C -0.22 -4.89 9.98 22.39 0.22 -4.67 16 21 C 0.14 3.39 6.70 22.49 0.15 3.54 16 22 O -0.51 -10.15 13.50 -92.48 -1.25 -11.40 16 23 C -0.23 -5.91 9.14 22.49 0.21 -5.70 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 28 H 0.07 1.54 6.20 -2.38 -0.01 1.52 16 29 H 0.14 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.13 2.43 6.20 -2.38 -0.01 2.42 16 31 H 0.41 13.15 8.32 -92.71 -0.77 12.38 16 32 H 0.01 0.38 7.20 -2.39 -0.02 0.37 16 33 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 34 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 35 H 0.12 3.09 6.14 -2.91 -0.02 3.07 16 36 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.41 4.35 9.06 -74.05 -0.67 3.68 16 39 H 0.13 3.04 6.14 -2.91 -0.02 3.02 16 Total: -1.00 -73.01 330.47 1.19 -71.82 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.42 Total: 21.52 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.78 Total: -1.06 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -3.76 Total: -100.61 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.30 Total: -37.57 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -73.01 1.19 -71.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789455681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.042 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds