Wall clock time and date at job start Tue Mar 31 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99975 * 2 1 4 4 C 1.52999 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47002 * 64.99664 * 4 3 2 6 6 C 1.46494 * 120.00471 * 275.00359 * 5 4 3 7 7 N 1.40101 * 119.99768 * 95.00616 * 5 4 3 8 8 C 1.29744 * 120.00098 * 180.02562 * 7 5 4 9 9 C 1.47504 * 120.00072 * 179.97438 * 8 7 5 10 10 C 1.39762 * 120.12128 * 359.97438 * 9 8 7 11 11 C 1.37975 * 119.97765 * 180.02562 * 10 9 8 12 12 C 1.38251 * 120.23188 * 359.72322 * 11 10 9 13 13 C 1.38980 * 120.24431 * 0.54897 * 12 11 10 14 14 O 1.35760 * 119.98846 * 179.72405 * 13 12 11 15 15 C 1.34837 * 116.99569 * 174.18600 * 14 13 12 16 16 H 1.07995 * 119.99773 * 5.05821 * 15 14 13 17 17 C 1.38645 * 119.99868 * 185.05741 * 15 14 13 18 18 N 1.31564 * 119.99850 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99994 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47204 * 120.00073 * 19 17 15 22 22 H 1.48502 * 109.46867 * 239.99594 * 19 17 15 23 23 C 1.38607 * 120.01329 * 359.45435 * 13 12 11 24 24 H 1.08996 * 109.47073 * 299.99990 * 1 2 3 25 25 H 1.09003 * 109.47009 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.47251 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47177 * 60.00104 * 3 2 1 28 28 H 1.09001 * 109.47457 * 300.00150 * 3 2 1 29 29 H 1.09003 * 109.47207 * 305.00103 * 4 3 2 30 30 H 1.08997 * 109.47469 * 185.00468 * 4 3 2 31 31 H 1.09008 * 109.47334 * 270.00084 * 6 5 4 32 32 H 1.08999 * 109.47421 * 30.00134 * 6 5 4 33 33 H 1.09000 * 109.47213 * 150.00220 * 6 5 4 34 34 H 1.07999 * 119.99932 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.00747 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.88184 * 179.97438 * 11 10 9 37 37 H 1.08007 * 119.87842 * 180.27967 * 12 11 10 38 38 H 0.97007 * 119.99739 * 180.02562 * 18 17 15 39 39 H 1.08009 * 120.11063 * 180.25211 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0015 -0.8954 -1.3758 7 7 4.3749 1.3661 -2.3282 8 6 4.7652 0.8164 -3.4368 9 6 5.1840 1.6609 -4.5713 10 6 5.1609 3.0535 -4.4551 11 6 5.5528 3.8407 -5.5183 12 6 5.9744 3.2568 -6.6984 13 6 5.9958 1.8730 -6.8263 14 8 6.4055 1.3053 -7.9894 15 6 6.5177 -0.0383 -8.0085 16 1 6.2082 -0.6181 -7.1516 17 6 7.0305 -0.6752 -9.1281 18 7 7.4071 0.0313 -10.1721 19 14 7.1854 -2.5366 -9.1548 20 1 6.6961 -3.0925 -7.8676 21 1 6.3745 -3.0848 -10.2715 22 1 8.6093 -2.9121 -9.3463 23 6 5.6043 1.0726 -5.7646 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0903 31 1 4.9747 -1.2708 -1.0592 32 1 3.2233 -1.3273 -0.7464 33 1 3.8250 -1.1742 -2.4146 34 1 4.7835 -0.2595 -3.5288 35 1 4.8356 3.5133 -3.5336 36 1 5.5339 4.9167 -5.4270 37 1 6.2842 3.8784 -7.5256 38 1 7.7655 -0.4145 -10.9556 39 1 5.6242 -0.0030 -5.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794966347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:37 Heat of formation + Delta-G solvation = 6.611242 kcal Electronic energy + Delta-G solvation = -20618.010094 eV Core-core repulsion = 17335.252526 eV Total energy + Delta-G solvation = -3282.757568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.99130 -38.42539 -37.21279 -36.18558 -33.31484 -32.19365 -30.51219 -29.42786 -28.56598 -26.97583 -25.73509 -25.17231 -23.27950 -21.53929 -21.34931 -19.17646 -17.91071 -17.07662 -16.82568 -16.36182 -16.17438 -15.52480 -15.00118 -14.92112 -14.37184 -14.23200 -14.02465 -13.56204 -13.47070 -12.91161 -12.59551 -12.42535 -12.27671 -12.11572 -12.00169 -11.92515 -11.63925 -11.34048 -11.13119 -10.75113 -10.68804 -10.67234 -10.40797 -9.92630 -9.73916 -9.34850 -8.83466 -8.47784 -7.38738 -7.04395 -6.41279 -4.00716 1.56764 2.39926 2.79542 3.08359 3.15642 3.19673 3.21291 3.56353 3.99413 4.69217 4.73817 4.86939 4.99385 5.09867 5.12028 5.13604 5.16150 5.27447 5.31939 5.35237 5.40970 5.52550 5.62662 5.68592 5.80449 5.91629 6.02178 6.11412 6.25967 6.47406 6.74178 6.86663 6.88178 7.12396 7.14329 7.33282 7.40093 7.45362 7.82619 8.03259 8.51721 9.04658 9.75114 10.77049 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003579 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.478645 B = 7821.157940 C = 8850.630676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.038 3.962 4 C 0.168 3.832 5 N -0.547 5.547 6 C 0.074 3.926 7 N -0.234 5.234 8 C 0.074 3.926 9 C -0.004 4.004 10 C -0.176 4.176 11 C -0.084 4.084 12 C -0.181 4.181 13 C 0.150 3.850 14 O -0.180 6.180 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.939 3.061 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.208 4.208 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.269 0.731 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 0.392 18.602 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.041 4.041 4 C 0.043 3.957 5 N -0.362 5.362 6 C -0.071 4.071 7 N -0.038 5.038 8 C -0.136 4.136 9 C -0.006 4.006 10 C -0.197 4.197 11 C -0.102 4.102 12 C -0.202 4.202 13 C 0.097 3.903 14 O -0.084 6.084 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.764 3.236 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.230 4.230 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.079 0.921 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.368 1.001 18.823 21.049 hybrid contribution -0.175 -1.675 -0.287 1.708 sum -9.543 -0.674 18.536 20.859 Atomic orbital electron populations 1.22712 0.81373 1.02548 0.99813 1.87867 1.19456 1.28044 1.95393 1.23281 0.95489 0.84909 1.00389 1.21076 0.90742 0.99568 0.84279 1.49882 1.73621 1.01888 1.10791 1.21825 1.01069 0.81789 1.02436 1.74322 1.09028 1.23929 0.96518 1.24130 1.00234 0.97751 0.91489 1.18036 0.99205 0.92365 0.91011 1.20767 1.07369 0.92428 0.99116 1.20604 0.98346 0.98593 0.92675 1.20348 1.08564 0.92265 0.98978 1.19184 0.92598 0.92144 0.86356 1.84005 1.73986 1.23153 1.27223 1.21343 1.43548 0.78737 1.03112 0.89079 1.25261 0.96164 1.00386 0.94697 1.70053 1.39509 1.35855 1.04529 0.85674 0.78346 0.80854 0.78713 1.19123 1.20200 1.20185 1.21181 1.08166 1.00460 0.93235 0.94302 0.94176 0.89830 0.92824 0.92786 0.90508 0.88887 0.94167 0.90297 0.92096 0.87300 0.86731 0.86847 0.86467 0.92147 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.17 9.08 -35.23 -0.32 -4.49 16 3 C 0.04 0.37 6.28 37.16 0.23 0.60 16 4 C 0.17 1.73 6.43 -4.04 -0.03 1.71 16 5 N -0.55 -7.42 3.85 -121.76 -0.47 -7.89 16 6 C 0.07 0.90 9.99 59.84 0.60 1.50 16 7 N -0.23 -3.77 10.61 32.16 0.34 -3.43 16 8 C 0.07 1.27 10.15 -14.66 -0.15 1.12 16 9 C 0.00 -0.07 5.87 -105.07 -0.62 -0.69 16 10 C -0.18 -3.22 9.58 -39.11 -0.37 -3.59 16 11 C -0.08 -1.52 10.02 -39.67 -0.40 -1.92 16 12 C -0.18 -3.83 9.98 -39.30 -0.39 -4.22 16 13 C 0.15 3.62 6.64 -39.17 -0.26 3.36 16 14 O -0.18 -5.11 9.76 0.00 0.00 -5.11 16 15 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 19 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.21 -4.54 8.90 -38.96 -0.35 -4.89 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.88 6.67 -51.93 -0.35 0.54 16 33 H 0.06 0.77 6.19 -51.93 -0.32 0.44 16 34 H 0.11 1.72 5.91 -52.49 -0.31 1.41 16 35 H 0.11 1.93 7.55 -52.49 -0.40 1.53 16 36 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 2.79 5.63 -52.48 -0.30 2.49 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -31.69 334.36 -5.40 -37.09 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.30 Total: 3.18 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.42 Total: -15.27 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.63 Total: -35.92 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.32 Total: -9.60 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.69 -5.40 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794966347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.703 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds