Wall clock time and date at job start Tue Mar 31 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99975 * 2 1 4 4 C 1.52999 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47002 * 64.99664 * 4 3 2 6 6 C 1.46494 * 120.00471 * 275.00359 * 5 4 3 7 7 N 1.40101 * 119.99768 * 95.00616 * 5 4 3 8 8 C 1.29744 * 120.00098 * 180.02562 * 7 5 4 9 9 C 1.47504 * 120.00072 * 179.97438 * 8 7 5 10 10 C 1.39762 * 120.12128 * 359.97438 * 9 8 7 11 11 C 1.37975 * 119.97765 * 180.02562 * 10 9 8 12 12 C 1.38251 * 120.23188 * 359.72322 * 11 10 9 13 13 C 1.38980 * 120.24431 * 0.54897 * 12 11 10 14 14 O 1.35760 * 119.98846 * 179.72405 * 13 12 11 15 15 C 1.34837 * 116.99569 * 174.18600 * 14 13 12 16 16 H 1.07995 * 119.99773 * 5.05821 * 15 14 13 17 17 C 1.38645 * 119.99868 * 185.05741 * 15 14 13 18 18 N 1.31564 * 119.99850 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99994 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47204 * 120.00073 * 19 17 15 22 22 H 1.48502 * 109.46867 * 239.99594 * 19 17 15 23 23 C 1.38607 * 120.01329 * 359.45435 * 13 12 11 24 24 H 1.08996 * 109.47073 * 299.99990 * 1 2 3 25 25 H 1.09003 * 109.47009 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.47251 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47177 * 60.00104 * 3 2 1 28 28 H 1.09001 * 109.47457 * 300.00150 * 3 2 1 29 29 H 1.09003 * 109.47207 * 305.00103 * 4 3 2 30 30 H 1.08997 * 109.47469 * 185.00468 * 4 3 2 31 31 H 1.09008 * 109.47334 * 270.00084 * 6 5 4 32 32 H 1.08999 * 109.47421 * 30.00134 * 6 5 4 33 33 H 1.09000 * 109.47213 * 150.00220 * 6 5 4 34 34 H 1.07999 * 119.99932 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.00747 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.88184 * 179.97438 * 11 10 9 37 37 H 1.08007 * 119.87842 * 180.27967 * 12 11 10 38 38 H 0.97007 * 119.99739 * 180.02562 * 18 17 15 39 39 H 1.08009 * 120.11063 * 180.25211 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0015 -0.8954 -1.3758 7 7 4.3749 1.3661 -2.3282 8 6 4.7652 0.8164 -3.4368 9 6 5.1840 1.6609 -4.5713 10 6 5.1609 3.0535 -4.4551 11 6 5.5528 3.8407 -5.5183 12 6 5.9744 3.2568 -6.6984 13 6 5.9958 1.8730 -6.8263 14 8 6.4055 1.3053 -7.9894 15 6 6.5177 -0.0383 -8.0085 16 1 6.2082 -0.6181 -7.1516 17 6 7.0305 -0.6752 -9.1281 18 7 7.4071 0.0313 -10.1721 19 14 7.1854 -2.5366 -9.1548 20 1 6.6961 -3.0925 -7.8676 21 1 6.3745 -3.0848 -10.2715 22 1 8.6093 -2.9121 -9.3463 23 6 5.6043 1.0726 -5.7646 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0903 31 1 4.9747 -1.2708 -1.0592 32 1 3.2233 -1.3273 -0.7464 33 1 3.8250 -1.1742 -2.4146 34 1 4.7835 -0.2595 -3.5288 35 1 4.8356 3.5133 -3.5336 36 1 5.5339 4.9167 -5.4270 37 1 6.2842 3.8784 -7.5256 38 1 7.7655 -0.4145 -10.9556 39 1 5.6242 -0.0030 -5.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794966347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:36 Heat of formation + Delta-G solvation = -13.849999 kcal Electronic energy + Delta-G solvation = -20618.897360 eV Core-core repulsion = 17335.252526 eV Total energy + Delta-G solvation = -3283.644834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.71052 -39.33631 -38.51650 -37.64161 -34.59757 -34.09178 -31.79828 -30.72817 -30.05381 -27.80820 -27.32633 -26.52885 -24.44396 -23.20513 -22.56503 -20.61863 -19.65125 -18.47176 -18.21106 -17.25420 -17.06437 -16.70549 -16.41474 -16.17796 -15.96988 -15.73397 -15.49387 -15.06480 -14.80481 -14.32448 -14.04410 -13.63556 -13.46354 -13.42819 -13.10164 -12.92271 -12.81421 -12.75990 -12.39450 -12.27734 -12.20843 -12.06519 -12.00224 -11.29640 -10.95181 -10.78295 -10.64401 -9.92011 -9.05544 -8.43415 -8.37180 -6.11397 0.06203 0.76971 1.37401 1.44465 1.55405 1.68436 1.73180 2.20424 2.86958 2.92321 3.26394 3.53583 3.69034 3.99537 4.11858 4.21017 4.30434 4.34557 4.37138 4.46193 4.48663 4.52029 4.54973 4.63584 4.68729 4.72332 4.81887 4.89908 4.93406 5.08212 5.14924 5.17388 5.28464 5.70681 5.72481 5.81159 6.06206 6.12677 6.22152 6.25320 7.01837 7.28447 7.82765 8.80225 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003579 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.478645 B = 7821.157940 C = 8850.630676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.042 3.958 4 C 0.158 3.842 5 N -0.545 5.545 6 C 0.073 3.927 7 N -0.226 5.226 8 C 0.050 3.950 9 C 0.002 3.998 10 C -0.164 4.164 11 C -0.069 4.069 12 C -0.195 4.195 13 C 0.115 3.885 14 O -0.231 6.231 15 C -0.411 4.411 16 H 0.102 0.898 17 C -0.023 4.023 18 N -0.922 5.922 19 Si 1.016 2.984 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.219 4.219 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 0.243 22.019 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.037 4.037 4 C 0.036 3.964 5 N -0.360 5.360 6 C -0.072 4.072 7 N -0.032 5.032 8 C -0.160 4.160 9 C -0.001 4.001 10 C -0.185 4.185 11 C -0.087 4.087 12 C -0.216 4.216 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.487 4.487 16 H 0.119 0.881 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.836 3.164 20 H -0.174 1.174 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.241 4.241 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.560 0.877 22.302 24.691 hybrid contribution 0.012 -1.436 -0.949 1.722 sum -10.547 -0.560 21.353 23.822 Atomic orbital electron populations 1.22846 0.80128 1.03458 1.00370 1.87825 1.20882 1.28577 1.95528 1.23226 0.94850 0.84751 1.00825 1.21413 0.91357 1.00401 0.83276 1.50254 1.72449 1.02614 1.10713 1.21911 1.02022 0.80949 1.02318 1.74154 1.07148 1.25246 0.96661 1.23828 1.02901 0.97814 0.91477 1.18220 0.97770 0.93316 0.90749 1.21156 1.05428 0.92016 0.99869 1.21029 0.95960 1.00754 0.90939 1.20614 1.09210 0.91260 1.00479 1.19714 0.93858 0.93631 0.86294 1.83967 1.76612 1.23522 1.29700 1.21844 1.43797 0.79222 1.03840 0.88083 1.26542 0.95521 1.05987 0.93958 1.70196 1.41886 1.38324 1.05619 0.84563 0.78619 0.73817 0.79446 1.17408 1.19412 1.19430 1.21176 1.08973 1.00086 0.93854 0.92592 0.94733 0.88869 0.90060 0.94628 0.88475 0.87951 0.93198 0.89102 0.92837 0.86555 0.84264 0.82580 0.86402 0.91926 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.66 9.08 -148.98 -1.35 -9.01 16 3 C 0.04 0.68 6.28 71.98 0.45 1.13 16 4 C 0.16 2.74 6.43 86.38 0.56 3.29 16 5 N -0.54 -13.27 3.85 -539.14 -2.07 -15.34 16 6 C 0.07 1.59 9.99 127.77 1.28 2.87 16 7 N -0.23 -6.74 10.61 -52.16 -0.55 -7.29 16 8 C 0.05 1.62 10.15 87.45 0.89 2.51 16 9 C 0.00 0.07 5.87 -20.15 -0.12 -0.05 16 10 C -0.16 -5.60 9.58 22.58 0.22 -5.38 16 11 C -0.07 -2.35 10.02 22.21 0.22 -2.13 16 12 C -0.20 -8.34 9.98 22.45 0.22 -8.11 16 13 C 0.12 5.78 6.64 22.54 0.15 5.93 16 14 O -0.23 -13.95 9.76 -22.93 -0.22 -14.17 16 15 C -0.41 -23.98 9.48 67.92 0.64 -23.34 16 16 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 17 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 18 N -0.92 -56.82 13.67 21.61 0.30 -56.52 16 19 Si 1.02 43.04 29.55 68.60 2.03 45.06 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 C -0.22 -9.79 8.90 22.67 0.20 -9.58 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.79 6.67 -2.39 -0.02 1.77 16 33 H 0.05 1.26 6.19 -2.39 -0.01 1.24 16 34 H 0.12 3.59 5.91 -2.91 -0.02 3.57 16 35 H 0.14 4.12 7.55 -2.91 -0.02 4.10 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.12 5.49 5.63 -2.91 -0.02 5.48 16 Total: -1.00 -72.03 334.36 5.59 -66.44 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.05 Total: 22.91 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 6.43 Total: -32.07 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.33 Total: -79.16 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.58 Total: -23.18 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.03 5.59 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794966347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.586 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds