Wall clock time and date at job start Tue Mar 31 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99742 * 2 1 4 4 C 1.53000 * 109.47023 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46984 * 64.99955 * 4 3 2 6 6 C 1.46497 * 120.00547 * 274.99997 * 5 4 3 7 7 N 1.40108 * 119.99689 * 95.00128 * 5 4 3 8 8 C 1.29809 * 120.00008 * 179.97438 * 7 5 4 9 9 C 1.47389 * 119.99870 * 180.02562 * 8 7 5 10 10 C 1.39793 * 120.08093 * 180.02562 * 9 8 7 11 11 C 1.37739 * 119.90759 * 180.02562 * 10 9 8 12 12 C 1.39060 * 120.08521 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.91155 * 179.97438 * 12 11 10 14 14 C 1.34812 * 116.99849 * 5.55053 * 13 12 11 15 15 H 1.08003 * 119.99914 * 354.94183 * 14 13 12 16 16 C 1.38614 * 119.99773 * 174.94478 * 14 13 12 17 17 N 1.31580 * 119.99964 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00270 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47265 * 90.00323 * 18 16 14 20 20 H 1.48506 * 109.47197 * 210.00256 * 18 16 14 21 21 H 1.48499 * 109.47463 * 330.00185 * 18 16 14 22 22 C 1.39069 * 120.18038 * 0.23761 * 12 11 10 23 23 C 1.37736 * 120.08272 * 359.48644 * 22 12 11 24 24 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47474 * 299.99850 * 1 2 3 26 26 H 1.08997 * 109.47200 * 59.99858 * 1 2 3 27 27 H 1.09001 * 109.47343 * 60.00544 * 3 2 1 28 28 H 1.08995 * 109.47678 * 300.00160 * 3 2 1 29 29 H 1.09007 * 109.47315 * 305.00098 * 4 3 2 30 30 H 1.08996 * 109.47364 * 185.00525 * 4 3 2 31 31 H 1.09002 * 109.47249 * 270.00407 * 6 5 4 32 32 H 1.09007 * 109.46771 * 30.00086 * 6 5 4 33 33 H 1.08999 * 109.47450 * 149.99763 * 6 5 4 34 34 H 1.08001 * 119.99610 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.05215 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.95715 * 179.97438 * 11 10 9 37 37 H 0.97001 * 120.00375 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.95783 * 179.74566 * 22 12 11 39 39 H 1.07996 * 120.04550 * 180.23058 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0015 -0.8954 -1.3759 7 7 4.3748 1.3663 -2.3283 8 6 4.7662 0.8164 -3.4371 9 6 5.1857 1.6603 -4.5703 10 6 5.6070 1.0699 -5.7653 11 6 5.9988 1.8620 -6.8219 12 6 5.9760 3.2471 -6.7007 13 8 6.3631 4.0240 -7.7435 14 6 6.6472 3.3960 -8.9021 15 1 6.6415 2.3170 -8.9470 16 6 6.9469 4.1353 -10.0357 17 7 7.2237 3.5224 -11.1667 18 14 6.9563 6.0016 -9.9582 19 1 8.3155 6.4751 -9.5929 20 1 6.5795 6.5540 -11.2842 21 1 5.9813 6.4596 -8.9361 22 6 5.5627 3.8382 -5.5116 23 6 5.1640 3.0531 -4.4525 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0903 31 1 4.9747 -1.2706 -1.0593 32 1 3.2233 -1.3272 -0.7465 33 1 3.8249 -1.1742 -2.4147 34 1 4.7845 -0.2596 -3.5291 35 1 5.6262 -0.0057 -5.8598 36 1 6.3248 1.4067 -7.7454 37 1 7.4331 4.0397 -11.9601 38 1 5.5503 4.9142 -5.4201 39 1 4.8397 3.5128 -3.5306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794971931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:40 Heat of formation + Delta-G solvation = 7.098913 kcal Electronic energy + Delta-G solvation = -20393.078602 eV Core-core repulsion = 17110.342181 eV Total energy + Delta-G solvation = -3282.736421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.17266 -38.44138 -37.32758 -36.31778 -33.17394 -32.37735 -30.32919 -30.12865 -28.66218 -26.96557 -25.82147 -25.04184 -22.91744 -22.06039 -21.11758 -19.20447 -17.91593 -17.34714 -17.04213 -16.48359 -16.18946 -15.60504 -15.24764 -14.70471 -14.44204 -14.03659 -13.86893 -13.76569 -13.56068 -12.86714 -12.67799 -12.36310 -12.31764 -12.24291 -12.13036 -12.07715 -11.94493 -11.35860 -11.15181 -11.07161 -10.74426 -10.61193 -10.19457 -9.93684 -9.69207 -9.39491 -8.93319 -8.28110 -8.05302 -6.86577 -6.46011 -4.11094 1.63436 2.18604 2.83359 3.07190 3.23223 3.25059 3.38914 3.55428 4.20840 4.59578 4.75061 4.83006 4.86659 4.98751 5.08690 5.09414 5.10769 5.15607 5.24959 5.33126 5.38793 5.49914 5.54769 5.68430 5.73434 5.76751 5.86848 6.09250 6.21093 6.44970 6.57175 6.80680 6.86986 7.04866 7.21034 7.23728 7.32539 7.58188 7.77102 7.99759 8.58130 8.88789 9.50864 10.61107 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.002808 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.782914 B = 9969.706516 C =10206.702635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.038 3.962 4 C 0.169 3.831 5 N -0.550 5.550 6 C 0.077 3.923 7 N -0.253 5.253 8 C 0.091 3.909 9 C -0.140 4.140 10 C -0.047 4.047 11 C -0.225 4.225 12 C 0.169 3.831 13 O -0.212 6.212 14 C -0.389 4.389 15 H 0.109 0.891 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.258 1.258 22 C -0.198 4.198 23 C -0.040 4.040 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.280 0.720 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 -5.948 20.065 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.041 4.041 4 C 0.045 3.955 5 N -0.365 5.365 6 C -0.069 4.069 7 N -0.058 5.058 8 C -0.118 4.118 9 C -0.143 4.143 10 C -0.068 4.068 11 C -0.244 4.244 12 C 0.115 3.885 13 O -0.116 6.116 14 C -0.465 4.465 15 H 0.126 0.874 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.182 1.182 22 C -0.218 4.218 23 C -0.061 4.061 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.166 -5.098 20.438 22.972 hybrid contribution -0.163 -0.097 -0.518 0.552 sum -9.329 -5.196 19.919 22.601 Atomic orbital electron populations 1.22708 0.81419 1.02497 0.99833 1.87862 1.19415 1.28120 1.95397 1.23294 0.95596 0.84836 1.00359 1.21038 0.90639 0.99509 0.84347 1.49792 1.74198 1.01648 1.10878 1.21773 1.00835 0.82116 1.02133 1.74356 1.11087 1.23691 0.96658 1.23950 0.99286 0.97165 0.91422 1.17920 1.11052 0.92419 0.92917 1.20828 0.95773 0.98609 0.91609 1.21165 1.09271 0.93261 1.00734 1.19289 0.91256 0.89907 0.88083 1.83548 1.73536 1.35778 1.18738 1.20807 1.47617 0.94114 0.83917 0.87398 1.24488 0.95548 1.00452 0.93523 1.69654 1.44492 1.36939 1.00272 0.86171 0.79552 0.83317 0.77847 1.19811 1.20772 1.18247 1.20173 1.09269 0.99679 0.92637 1.20810 0.95803 0.92368 0.97087 0.89869 0.94297 0.94196 0.92896 0.92791 0.90684 0.88965 0.94454 0.90484 0.92349 0.87851 0.86871 0.84646 0.90953 0.86370 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.02 9.08 -35.23 -0.32 -4.34 16 3 C 0.04 0.36 6.28 37.16 0.23 0.59 16 4 C 0.17 1.69 6.43 -4.04 -0.03 1.67 16 5 N -0.55 -7.08 3.85 -121.76 -0.47 -7.55 16 6 C 0.08 0.85 9.99 59.85 0.60 1.45 16 7 N -0.25 -3.87 10.61 32.15 0.34 -3.53 16 8 C 0.09 1.40 10.15 -14.68 -0.15 1.25 16 9 C -0.14 -2.43 5.87 -105.01 -0.62 -3.04 16 10 C -0.05 -0.84 9.78 -39.18 -0.38 -1.23 16 11 C -0.23 -4.73 9.15 -39.46 -0.36 -5.09 16 12 C 0.17 3.84 6.65 -38.97 -0.26 3.58 16 13 O -0.21 -5.51 8.58 0.32 0.00 -5.51 16 14 C -0.39 -10.76 9.94 30.87 0.31 -10.45 16 15 H 0.11 3.03 5.42 -52.48 -0.28 2.74 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -24.93 13.96 55.48 0.77 -24.16 16 18 Si 0.91 21.37 28.61 -169.99 -4.86 16.51 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.20 -3.95 9.97 -39.46 -0.39 -4.34 16 23 C -0.04 -0.72 9.57 -39.18 -0.37 -1.10 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.80 6.67 -51.93 -0.35 0.45 16 33 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 34 H 0.10 1.40 5.91 -52.49 -0.31 1.09 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.14 2.96 5.62 -52.48 -0.29 2.66 16 37 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.12 1.99 7.55 -52.49 -0.40 1.59 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -30.16 333.19 -5.24 -35.40 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.31 Total: 1.85 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.41 Total: -13.69 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.65 Total: -35.23 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.32 Total: -9.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.16 -5.24 -35.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794971931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.500 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds