Wall clock time and date at job start Tue Mar 31 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99742 * 2 1 4 4 C 1.53000 * 109.47023 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46984 * 64.99955 * 4 3 2 6 6 C 1.46497 * 120.00547 * 274.99997 * 5 4 3 7 7 N 1.40108 * 119.99689 * 95.00128 * 5 4 3 8 8 C 1.29809 * 120.00008 * 179.97438 * 7 5 4 9 9 C 1.47389 * 119.99870 * 180.02562 * 8 7 5 10 10 C 1.39793 * 120.08093 * 180.02562 * 9 8 7 11 11 C 1.37739 * 119.90759 * 180.02562 * 10 9 8 12 12 C 1.39060 * 120.08521 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.91155 * 179.97438 * 12 11 10 14 14 C 1.34812 * 116.99849 * 5.55053 * 13 12 11 15 15 H 1.08003 * 119.99914 * 354.94183 * 14 13 12 16 16 C 1.38614 * 119.99773 * 174.94478 * 14 13 12 17 17 N 1.31580 * 119.99964 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00270 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47265 * 90.00323 * 18 16 14 20 20 H 1.48506 * 109.47197 * 210.00256 * 18 16 14 21 21 H 1.48499 * 109.47463 * 330.00185 * 18 16 14 22 22 C 1.39069 * 120.18038 * 0.23761 * 12 11 10 23 23 C 1.37736 * 120.08272 * 359.48644 * 22 12 11 24 24 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47474 * 299.99850 * 1 2 3 26 26 H 1.08997 * 109.47200 * 59.99858 * 1 2 3 27 27 H 1.09001 * 109.47343 * 60.00544 * 3 2 1 28 28 H 1.08995 * 109.47678 * 300.00160 * 3 2 1 29 29 H 1.09007 * 109.47315 * 305.00098 * 4 3 2 30 30 H 1.08996 * 109.47364 * 185.00525 * 4 3 2 31 31 H 1.09002 * 109.47249 * 270.00407 * 6 5 4 32 32 H 1.09007 * 109.46771 * 30.00086 * 6 5 4 33 33 H 1.08999 * 109.47450 * 149.99763 * 6 5 4 34 34 H 1.08001 * 119.99610 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.05215 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.95715 * 179.97438 * 11 10 9 37 37 H 0.97001 * 120.00375 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.95783 * 179.74566 * 22 12 11 39 39 H 1.07996 * 120.04550 * 180.23058 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0015 -0.8954 -1.3759 7 7 4.3748 1.3663 -2.3283 8 6 4.7662 0.8164 -3.4371 9 6 5.1857 1.6603 -4.5703 10 6 5.6070 1.0699 -5.7653 11 6 5.9988 1.8620 -6.8219 12 6 5.9760 3.2471 -6.7007 13 8 6.3631 4.0240 -7.7435 14 6 6.6472 3.3960 -8.9021 15 1 6.6415 2.3170 -8.9470 16 6 6.9469 4.1353 -10.0357 17 7 7.2237 3.5224 -11.1667 18 14 6.9563 6.0016 -9.9582 19 1 8.3155 6.4751 -9.5929 20 1 6.5795 6.5540 -11.2842 21 1 5.9813 6.4596 -8.9361 22 6 5.5627 3.8382 -5.5116 23 6 5.1640 3.0531 -4.4525 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0903 31 1 4.9747 -1.2706 -1.0593 32 1 3.2233 -1.3272 -0.7465 33 1 3.8249 -1.1742 -2.4147 34 1 4.7845 -0.2596 -3.5291 35 1 5.6262 -0.0057 -5.8598 36 1 6.3248 1.4067 -7.7454 37 1 7.4331 4.0397 -11.9601 38 1 5.5503 4.9142 -5.4201 39 1 4.8397 3.5128 -3.5306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794971931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:40 Heat of formation + Delta-G solvation = -11.706800 kcal Electronic energy + Delta-G solvation = -20393.894079 eV Core-core repulsion = 17110.342181 eV Total energy + Delta-G solvation = -3283.551898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84761 -39.31031 -38.62733 -37.60586 -34.57118 -34.09069 -31.89054 -31.19555 -29.92695 -27.80228 -27.35659 -26.24526 -24.05643 -23.65377 -22.36816 -20.57444 -19.63846 -19.03155 -18.16877 -17.31901 -17.04815 -16.69334 -16.40286 -16.20627 -15.73230 -15.66446 -15.42273 -15.13147 -14.76701 -14.33090 -14.09835 -14.05043 -13.52173 -13.48237 -13.10450 -12.88558 -12.83744 -12.77542 -12.61179 -12.43981 -12.14330 -11.97044 -11.93788 -11.28605 -10.89098 -10.83562 -10.63253 -9.81847 -9.44085 -8.48703 -8.19395 -6.19730 0.19354 0.62088 1.33892 1.36395 1.53780 1.73721 1.84088 2.29720 2.84173 2.88579 3.08589 3.23822 3.78299 4.00119 4.14774 4.17143 4.22264 4.35218 4.39413 4.46399 4.50691 4.56008 4.56622 4.67761 4.69527 4.72784 4.83114 4.92391 4.97163 4.98898 5.13990 5.29628 5.46723 5.60816 5.76156 5.83322 5.90092 6.16804 6.22050 6.30377 6.85604 7.44133 7.59277 8.62458 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.002808 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.782914 B = 9969.706516 C =10206.702635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.042 3.958 4 C 0.161 3.839 5 N -0.550 5.550 6 C 0.075 3.925 7 N -0.254 5.254 8 C 0.072 3.928 9 C -0.114 4.114 10 C -0.045 4.045 11 C -0.235 4.235 12 C 0.130 3.870 13 O -0.241 6.241 14 C -0.399 4.399 15 H 0.086 0.914 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.194 4.194 23 C -0.042 4.042 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.285 0.715 38 H 0.130 0.870 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 -6.332 23.506 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.036 4.036 4 C 0.037 3.963 5 N -0.366 5.366 6 C -0.070 4.070 7 N -0.059 5.059 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.066 4.066 11 C -0.254 4.254 12 C 0.079 3.921 13 O -0.148 6.148 14 C -0.475 4.475 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.213 4.213 23 C -0.062 4.062 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.377 -5.507 23.937 26.664 hybrid contribution 0.011 -0.224 -1.079 1.102 sum -10.367 -5.731 22.858 25.745 Atomic orbital electron populations 1.22844 0.80193 1.03477 1.00302 1.87823 1.20805 1.28509 1.95514 1.23226 0.95084 0.84721 1.00615 1.21323 0.91131 1.00185 0.83634 1.50119 1.73229 1.02497 1.10709 1.21877 1.01749 0.80942 1.02408 1.74205 1.09238 1.25400 0.97101 1.23773 1.01195 0.97821 0.90955 1.18235 1.07655 0.92584 0.93219 1.21097 0.94729 1.00103 0.90652 1.21202 1.09839 0.93174 1.01211 1.19778 0.93128 0.90764 0.88394 1.83498 1.76403 1.36075 1.18798 1.20753 1.48031 0.93478 0.85215 0.89623 1.25263 0.95511 1.04881 0.93126 1.69735 1.46876 1.38545 1.01024 0.85240 0.79567 0.77990 0.78103 1.19088 1.19335 1.18650 1.20406 1.08292 1.00655 0.91943 1.21070 0.95259 0.92684 0.97170 0.88742 0.92787 0.94746 0.90451 0.94709 0.88742 0.88400 0.93369 0.89643 0.92361 0.85677 0.83499 0.86512 0.90564 0.85247 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.23 9.08 -148.98 -1.35 -8.58 16 3 C 0.04 0.67 6.28 71.98 0.45 1.12 16 4 C 0.16 2.66 6.43 86.38 0.56 3.22 16 5 N -0.55 -12.25 3.85 -539.13 -2.08 -14.32 16 6 C 0.08 1.40 9.99 127.77 1.28 2.68 16 7 N -0.25 -6.90 10.61 -52.21 -0.55 -7.45 16 8 C 0.07 1.98 10.15 87.40 0.89 2.87 16 9 C -0.11 -3.68 5.87 -20.12 -0.12 -3.80 16 10 C -0.05 -1.55 9.78 22.53 0.22 -1.33 16 11 C -0.24 -10.11 9.15 22.35 0.20 -9.91 16 12 C 0.13 6.05 6.65 22.67 0.15 6.20 16 13 O -0.24 -13.01 8.58 -21.76 -0.19 -13.20 16 14 C -0.40 -23.23 9.94 67.91 0.67 -22.55 16 15 H 0.09 5.18 5.42 -2.91 -0.02 5.16 16 16 C 0.01 0.62 5.49 84.82 0.47 1.09 16 17 N -0.92 -54.64 13.96 21.61 0.30 -54.34 16 18 Si 0.97 45.22 28.61 68.60 1.96 47.18 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.19 -7.60 9.97 22.35 0.22 -7.38 16 23 C -0.04 -1.41 9.57 22.53 0.22 -1.19 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 1.24 8.11 -2.38 -0.02 1.22 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 1.48 6.67 -2.38 -0.02 1.47 16 33 H 0.06 1.10 6.19 -2.39 -0.01 1.08 16 34 H 0.13 2.90 5.91 -2.91 -0.02 2.89 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.12 5.43 5.62 -2.91 -0.02 5.42 16 37 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.14 4.24 7.55 -2.91 -0.02 4.21 16 Total: -1.00 -66.97 333.19 5.60 -61.38 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.05 Total: 16.72 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 6.46 Total: -27.38 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.33 Total: -76.11 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.54 Total: -21.78 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.96 Total: 47.18 kcal Total: -66.97 5.60 -61.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794971931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.669 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds