Wall clock time and date at job start Tue Mar 31 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34956 * 126.03835 * 2 1 4 4 C 1.35317 * 107.74630 * 180.02562 * 3 2 1 5 5 C 1.39868 * 107.92175 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.89924 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47206 * 125.01998 * 6 5 4 8 8 C 1.50703 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.20829 * 119.99594 * 0.02562 * 8 7 6 10 10 O 1.34224 * 119.99926 * 179.97438 * 8 7 6 11 11 C 1.45199 * 116.99941 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47214 * 180.02562 * 11 10 8 13 13 C 1.50700 * 115.55295 * 65.10425 * 12 11 10 14 14 H 1.07997 * 120.00006 * 266.11392 * 13 12 11 15 15 C 1.37878 * 119.99833 * 86.10851 * 13 12 11 16 16 N 1.31520 * 120.00254 * 353.70478 * 15 13 12 17 17 Si 1.86795 * 119.99928 * 173.70214 * 15 13 12 18 18 H 1.48502 * 109.46886 * 90.00276 * 17 15 13 19 19 H 1.48505 * 109.47041 * 210.00014 * 17 15 13 20 20 H 1.48497 * 109.47344 * 330.00435 * 17 15 13 21 21 C 1.52995 * 117.49705 * 279.43357 * 12 11 10 22 22 C 1.52999 * 117.49668 * 210.77697 * 12 11 10 23 23 N 1.30837 * 108.20428 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.46878 * 270.02572 * 1 2 3 25 25 H 1.09003 * 109.46762 * 30.02450 * 1 2 3 26 26 H 1.08997 * 109.46685 * 150.02874 * 1 2 3 27 27 H 1.08005 * 126.12302 * 359.95445 * 3 2 1 28 28 H 1.08003 * 126.03701 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47170 * 245.02368 * 6 5 4 30 30 H 1.08997 * 109.47063 * 5.01956 * 6 5 4 31 31 H 1.08997 * 109.47000 * 300.00229 * 7 6 5 32 32 H 1.08996 * 109.46671 * 60.00243 * 7 6 5 33 33 H 1.09005 * 109.47310 * 299.99917 * 11 10 8 34 34 H 1.09003 * 109.47382 * 60.00162 * 11 10 8 35 35 H 0.96992 * 120.00042 * 179.97438 * 16 15 13 36 36 H 1.09007 * 117.50121 * 0.02562 * 21 12 11 37 37 H 1.09007 * 117.49907 * 145.01980 * 21 12 11 38 38 H 1.09004 * 117.49985 * 214.97636 * 22 12 11 39 39 H 1.08995 * 117.50488 * 359.97387 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 6 4.6723 -2.5925 1.1802 8 6 5.8870 -3.4845 1.1788 9 8 6.7285 -3.3577 0.3211 10 8 6.0346 -4.4189 2.1311 11 6 7.2293 -5.2416 2.0678 12 6 7.2219 -6.2416 3.2257 13 6 6.1200 -7.2691 3.1902 14 1 5.1974 -7.0900 3.7222 15 6 6.2899 -8.4376 2.4784 16 7 7.3592 -8.6028 1.7308 17 14 5.0011 -9.7862 2.5759 18 1 3.9855 -9.5782 1.5125 19 1 5.6520 -11.1076 2.3869 20 1 4.3411 -9.7451 3.9055 21 6 7.6733 -5.7370 4.5977 22 6 8.5750 -6.6760 3.7926 23 7 2.2892 -1.1328 -0.0002 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5134 27 1 1.9281 2.1194 -0.0007 28 1 4.4212 1.2964 -0.0011 29 1 4.7851 -2.1885 -0.9329 30 1 5.6483 -1.0131 0.0876 31 1 4.6370 -2.0275 2.1117 32 1 3.7737 -3.2029 1.0912 33 1 7.2486 -5.7822 1.1214 34 1 8.1122 -4.6065 2.1414 35 1 7.4788 -9.4250 1.2304 36 1 7.9752 -4.6925 4.6756 37 1 7.1736 -6.1485 5.4747 38 1 8.6681 -7.7049 4.1402 39 1 9.4704 -6.2498 3.3404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796927358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:52 Heat of formation + Delta-G solvation = 8.608420 kcal Electronic energy + Delta-G solvation = -20736.503534 eV Core-core repulsion = 17453.832570 eV Total energy + Delta-G solvation = -3282.670964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.30850 -39.68551 -36.82452 -35.29384 -34.56079 -32.03541 -31.91898 -30.12381 -27.73369 -26.51257 -25.27382 -24.12416 -21.33291 -21.15661 -20.22617 -19.46009 -19.20416 -17.31436 -16.71318 -16.38646 -15.98446 -15.60015 -15.17700 -14.61891 -14.38932 -14.13045 -13.82528 -13.59314 -13.10527 -12.99001 -12.74675 -12.36890 -12.14107 -11.97007 -11.74392 -11.50323 -11.19959 -10.95164 -10.82281 -10.59045 -10.49880 -10.25476 -9.95652 -9.78900 -9.52973 -9.33458 -8.78498 -8.71093 -8.43184 -8.17294 -6.03764 -4.08778 1.72907 2.34598 2.64079 2.85342 3.31486 3.38228 3.42003 3.46063 4.29359 4.42282 4.58676 4.79303 4.87286 5.03449 5.10931 5.14276 5.25392 5.28806 5.41697 5.58024 5.67015 5.76774 5.81158 6.02849 6.09266 6.11203 6.28818 6.37513 6.53539 6.57751 6.70363 6.77209 6.83570 7.06340 7.32857 7.40519 7.52189 7.60004 7.89686 8.40292 8.52355 8.92915 9.56929 11.05646 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.003492 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.958992 B = 8017.050152 C = 8785.886161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.050 3.950 4 C -0.267 4.267 5 C 0.079 3.921 6 C -0.026 4.026 7 C -0.108 4.108 8 C 0.455 3.545 9 O -0.526 6.526 10 O -0.338 6.338 11 C 0.116 3.884 12 C 0.037 3.963 13 C -0.490 4.490 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.206 4.206 22 C -0.145 4.145 23 N -0.290 5.290 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.172 0.828 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 18.638 -2.697 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.096 4.096 4 C -0.296 4.296 5 C -0.087 4.087 6 C -0.065 4.065 7 C -0.146 4.146 8 C 0.298 3.702 9 O -0.417 6.417 10 O -0.253 6.253 11 C 0.042 3.958 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.243 4.243 22 C -0.182 4.182 23 N -0.113 5.113 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.190 0.810 28 H 0.166 0.834 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.744 17.502 -3.050 20.762 hybrid contribution -0.072 0.002 -0.130 0.148 sum -10.816 17.504 -3.180 20.821 Atomic orbital electron populations 1.21839 0.74341 1.04381 1.03373 1.48543 1.06611 1.03880 1.57193 1.22517 0.91234 0.93403 1.02461 1.21448 0.97074 0.94398 1.16700 1.22296 0.93192 0.94006 0.99208 1.19816 0.92381 0.95285 0.99033 1.21250 0.95961 0.96685 1.00702 1.23515 0.87365 0.79906 0.79394 1.90609 1.43896 1.69553 1.37620 1.86520 1.46165 1.43781 1.48831 1.22885 0.81352 0.89472 1.02053 1.18778 0.95388 0.94374 0.87786 1.20393 1.00241 1.00518 1.31570 0.91879 1.25015 0.95572 0.98249 0.94632 1.70002 1.27362 1.26397 1.28063 0.86590 0.81612 0.81223 0.78595 1.20602 1.21180 1.19739 1.23010 1.06621 0.97027 0.97631 1.22529 0.93398 0.98637 1.03661 1.77385 1.01357 1.07610 1.24913 0.90753 0.89649 0.89255 0.81034 0.83393 0.89147 0.88970 0.88063 0.87385 0.90663 0.94340 0.92933 0.91556 0.90100 0.89441 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.30 16 2 N -0.38 -3.97 4.01 -68.16 -0.27 -4.25 16 3 C 0.05 0.44 11.49 -17.22 -0.20 0.24 16 4 C -0.27 -2.83 10.72 -40.01 -0.43 -3.26 16 5 C 0.08 1.03 6.49 -82.41 -0.53 0.49 16 6 C -0.03 -0.34 5.08 -27.89 -0.14 -0.49 16 7 C -0.11 -1.59 5.77 -27.88 -0.16 -1.75 16 8 C 0.45 8.85 7.96 36.01 0.29 9.14 16 9 O -0.53 -11.28 15.73 -18.75 -0.29 -11.57 16 10 O -0.34 -7.61 10.16 -39.24 -0.40 -8.01 16 11 C 0.12 2.81 5.29 37.16 0.20 3.01 16 12 C 0.04 0.94 1.62 -155.66 -0.25 0.69 16 13 C -0.49 -13.60 8.78 -34.44 -0.30 -13.90 16 14 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 15 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 16 N -0.88 -25.21 12.88 55.43 0.71 -24.50 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.21 -4.56 9.96 -26.70 -0.27 -4.83 16 22 C -0.14 -3.41 9.37 -26.70 -0.25 -3.66 16 23 N -0.29 -4.01 12.54 33.67 0.42 -3.59 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 28 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 30 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 34 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.29 343.49 -7.02 -40.31 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.88 Total: 1.29 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.46 Total: -11.21 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.86 Total: -32.33 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.69 Total: -19.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.29 -7.02 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796927358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.919 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds