Wall clock time and date at job start Tue Mar 31 2020 01:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34956 * 126.03835 * 2 1 4 4 C 1.35317 * 107.74630 * 180.02562 * 3 2 1 5 5 C 1.39868 * 107.92175 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.89924 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47206 * 125.01998 * 6 5 4 8 8 C 1.50703 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.20829 * 119.99594 * 0.02562 * 8 7 6 10 10 O 1.34224 * 119.99926 * 179.97438 * 8 7 6 11 11 C 1.45199 * 116.99941 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47214 * 180.02562 * 11 10 8 13 13 C 1.50700 * 115.55295 * 65.10425 * 12 11 10 14 14 H 1.07997 * 120.00006 * 266.11392 * 13 12 11 15 15 C 1.37878 * 119.99833 * 86.10851 * 13 12 11 16 16 N 1.31520 * 120.00254 * 353.70478 * 15 13 12 17 17 Si 1.86795 * 119.99928 * 173.70214 * 15 13 12 18 18 H 1.48502 * 109.46886 * 90.00276 * 17 15 13 19 19 H 1.48505 * 109.47041 * 210.00014 * 17 15 13 20 20 H 1.48497 * 109.47344 * 330.00435 * 17 15 13 21 21 C 1.52995 * 117.49705 * 279.43357 * 12 11 10 22 22 C 1.52999 * 117.49668 * 210.77697 * 12 11 10 23 23 N 1.30837 * 108.20428 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.46878 * 270.02572 * 1 2 3 25 25 H 1.09003 * 109.46762 * 30.02450 * 1 2 3 26 26 H 1.08997 * 109.46685 * 150.02874 * 1 2 3 27 27 H 1.08005 * 126.12302 * 359.95445 * 3 2 1 28 28 H 1.08003 * 126.03701 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47170 * 245.02368 * 6 5 4 30 30 H 1.08997 * 109.47063 * 5.01956 * 6 5 4 31 31 H 1.08997 * 109.47000 * 300.00229 * 7 6 5 32 32 H 1.08996 * 109.46671 * 60.00243 * 7 6 5 33 33 H 1.09005 * 109.47310 * 299.99917 * 11 10 8 34 34 H 1.09003 * 109.47382 * 60.00162 * 11 10 8 35 35 H 0.96992 * 120.00042 * 179.97438 * 16 15 13 36 36 H 1.09007 * 117.50121 * 0.02562 * 21 12 11 37 37 H 1.09007 * 117.49907 * 145.01980 * 21 12 11 38 38 H 1.09004 * 117.49985 * 214.97636 * 22 12 11 39 39 H 1.08995 * 117.50488 * 359.97387 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 6 4.6723 -2.5925 1.1802 8 6 5.8870 -3.4845 1.1788 9 8 6.7285 -3.3577 0.3211 10 8 6.0346 -4.4189 2.1311 11 6 7.2293 -5.2416 2.0678 12 6 7.2219 -6.2416 3.2257 13 6 6.1200 -7.2691 3.1902 14 1 5.1974 -7.0900 3.7222 15 6 6.2899 -8.4376 2.4784 16 7 7.3592 -8.6028 1.7308 17 14 5.0011 -9.7862 2.5759 18 1 3.9855 -9.5782 1.5125 19 1 5.6520 -11.1076 2.3869 20 1 4.3411 -9.7451 3.9055 21 6 7.6733 -5.7370 4.5977 22 6 8.5750 -6.6760 3.7926 23 7 2.2892 -1.1328 -0.0002 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5134 27 1 1.9281 2.1194 -0.0007 28 1 4.4212 1.2964 -0.0011 29 1 4.7851 -2.1885 -0.9329 30 1 5.6483 -1.0131 0.0876 31 1 4.6370 -2.0275 2.1117 32 1 3.7737 -3.2029 1.0912 33 1 7.2486 -5.7822 1.1214 34 1 8.1122 -4.6065 2.1414 35 1 7.4788 -9.4250 1.2304 36 1 7.9752 -4.6925 4.6756 37 1 7.1736 -6.1485 5.4747 38 1 8.6681 -7.7049 4.1402 39 1 9.4704 -6.2498 3.3404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796927358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:50 Heat of formation + Delta-G solvation = -10.409950 kcal Electronic energy + Delta-G solvation = -20737.328232 eV Core-core repulsion = 17453.832570 eV Total energy + Delta-G solvation = -3283.495662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10512 -41.33494 -38.64808 -37.01338 -35.58690 -34.02593 -32.94071 -30.92629 -29.13924 -27.89267 -27.17144 -25.24540 -22.98935 -22.08816 -21.63238 -21.18799 -20.43764 -18.62495 -18.33642 -17.67523 -17.54310 -17.00676 -16.56926 -16.28935 -15.72082 -15.46289 -14.84387 -14.79044 -14.45988 -14.04971 -13.92635 -13.58304 -13.42878 -13.37230 -13.04614 -12.96036 -12.87521 -12.78710 -12.38017 -12.27623 -12.08468 -11.68730 -11.65088 -11.48160 -11.34064 -10.77183 -10.49436 -10.20060 -10.07453 -9.46033 -8.14493 -6.25664 0.97001 1.26418 1.40868 1.41961 1.52487 1.65977 1.75945 1.99833 2.41971 3.14295 3.40768 3.57774 3.80703 3.85542 4.09799 4.16162 4.16855 4.26343 4.39898 4.47102 4.47944 4.55403 4.65589 4.67784 4.72796 4.85070 4.86852 4.97198 4.98239 5.04365 5.18289 5.18971 5.46861 5.58836 5.67922 5.73864 5.76151 6.22319 6.35682 6.78310 6.79533 6.85295 7.43003 8.94392 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.003492 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.958992 B = 8017.050152 C = 8785.886161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.064 3.936 4 C -0.286 4.286 5 C 0.062 3.938 6 C -0.019 4.019 7 C -0.093 4.093 8 C 0.453 3.547 9 O -0.548 6.548 10 O -0.350 6.350 11 C 0.128 3.872 12 C 0.002 3.998 13 C -0.506 4.506 14 H 0.054 0.946 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.952 3.048 18 H -0.280 1.280 19 H -0.281 1.281 20 H -0.265 1.265 21 C -0.178 4.178 22 C -0.145 4.145 23 N -0.337 5.337 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.218 0.782 28 H 0.165 0.835 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.261 0.739 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 20.709 -2.066 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.082 4.082 4 C -0.315 4.315 5 C -0.103 4.103 6 C -0.058 4.058 7 C -0.131 4.131 8 C 0.298 3.702 9 O -0.439 6.439 10 O -0.266 6.266 11 C 0.054 3.946 12 C 0.001 3.999 13 C -0.544 4.544 14 H 0.072 0.928 15 C -0.178 4.178 16 N -0.547 5.547 17 Si 0.778 3.222 18 H -0.206 1.206 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.215 4.215 22 C -0.183 4.183 23 N -0.161 5.161 24 H 0.103 0.897 25 H 0.139 0.861 26 H 0.101 0.899 27 H 0.234 0.766 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.192 19.579 -2.412 23.190 hybrid contribution 0.299 -0.543 -0.352 0.712 sum -11.893 19.036 -2.764 22.615 Atomic orbital electron populations 1.22186 0.72144 1.05839 1.04544 1.48910 1.07956 1.03480 1.56238 1.23216 0.90424 0.94804 0.99804 1.21755 0.98747 0.93484 1.17557 1.22243 0.92695 0.95060 1.00266 1.19705 0.93566 0.95029 0.97472 1.21298 0.93112 0.96085 1.02592 1.24423 0.88291 0.79288 0.78215 1.90592 1.45111 1.70017 1.38211 1.86528 1.45554 1.44410 1.50087 1.22511 0.82627 0.89560 0.99901 1.18884 0.95807 0.95187 0.89972 1.20649 1.00714 1.01573 1.31472 0.92784 1.25730 0.97460 1.00295 0.94298 1.70106 1.28949 1.26863 1.28750 0.85646 0.79236 0.78628 0.78712 1.20563 1.20620 1.18938 1.23022 1.04451 0.98076 0.95910 1.22468 0.93432 0.98295 1.04065 1.77284 1.02168 1.10009 1.26663 0.89695 0.86137 0.89916 0.76583 0.81782 0.90699 0.88064 0.85837 0.87538 0.94336 0.93102 0.92981 0.88961 0.89650 0.91178 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.47 127.77 1.47 2.35 16 2 N -0.38 -7.21 4.01 -369.55 -1.48 -8.69 16 3 C 0.06 0.94 11.49 83.54 0.96 1.90 16 4 C -0.29 -5.49 10.72 21.99 0.24 -5.26 16 5 C 0.06 1.57 6.49 43.10 0.28 1.85 16 6 C -0.02 -0.49 5.08 29.85 0.15 -0.34 16 7 C -0.09 -2.72 5.77 29.85 0.17 -2.54 16 8 C 0.45 17.76 7.96 71.24 0.57 18.33 16 9 O -0.55 -23.87 15.73 21.95 0.35 -23.53 16 10 O -0.35 -15.91 10.16 -51.36 -0.52 -16.43 16 11 C 0.13 6.31 5.29 71.98 0.38 6.69 16 12 C 0.00 0.10 1.62 -52.93 -0.09 0.01 16 13 C -0.51 -28.45 8.78 25.60 0.22 -28.23 16 14 H 0.05 3.04 7.82 -2.91 -0.02 3.02 16 15 C 0.02 1.26 5.38 84.65 0.46 1.71 16 16 N -0.91 -52.97 12.88 21.45 0.28 -52.69 16 17 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.18 -7.62 9.96 30.62 0.30 -7.31 16 22 C -0.15 -6.81 9.37 30.62 0.29 -6.52 16 23 N -0.34 -9.10 12.54 -47.39 -0.59 -9.70 16 24 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 28 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.07 2.17 8.10 -2.38 -0.02 2.15 16 30 H 0.10 2.43 8.08 -2.39 -0.02 2.41 16 31 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.11 3.19 8.14 -2.39 -0.02 3.18 16 33 H 0.04 2.14 8.13 -2.38 -0.02 2.13 16 34 H 0.05 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 37 H 0.08 3.57 8.14 -2.38 -0.02 3.55 16 38 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -72.92 343.49 6.48 -66.44 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.03 Total: 15.68 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 5.40 Total: -17.36 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.80 Total: -71.08 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.18 Total: -39.96 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -72.92 6.48 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796927358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.033 kcal (2) G-P(sol) polarization free energy of solvation -72.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds