Wall clock time and date at job start Tue Mar 31 2020 01:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40303 * 126.09310 * 2 1 4 4 C 1.31067 * 108.26654 * 180.02562 * 3 2 1 5 5 C 1.39291 * 108.08493 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.09315 * 179.97438 * 2 1 3 7 7 C 1.50827 * 128.03122 * 359.79092 * 6 2 1 8 8 C 1.53357 * 108.38266 * 196.66289 * 7 6 2 9 9 H 1.09006 * 109.46301 * 70.06352 * 8 7 6 10 10 C 1.50697 * 109.46907 * 190.04748 * 8 7 6 11 11 O 1.20833 * 119.99747 * 0.03756 * 10 8 7 12 12 O 1.34230 * 120.00262 * 179.75378 * 10 8 7 13 13 C 1.45202 * 116.99836 * 180.27336 * 12 10 8 14 14 C 1.52994 * 109.46919 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47473 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99561 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00335 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00015 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47550 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46870 * 119.99861 * 19 17 15 22 22 H 1.48500 * 109.47251 * 239.99905 * 19 17 15 23 23 C 1.53107 * 109.50501 * 310.05863 * 8 7 6 24 24 C 1.50836 * 127.90078 * 179.97438 * 5 4 3 25 25 H 1.08995 * 109.46950 * 89.97372 * 1 2 3 26 26 H 1.08995 * 109.46939 * 209.97446 * 1 2 3 27 27 H 1.08999 * 109.46838 * 329.98041 * 1 2 3 28 28 H 1.08006 * 125.95294 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.68323 * 76.93585 * 7 6 2 30 30 H 1.09003 * 109.68059 * 316.38253 * 7 6 2 31 31 H 1.08998 * 109.47630 * 300.00638 * 13 12 10 32 32 H 1.09004 * 109.46770 * 60.01042 * 13 12 10 33 33 H 1.08997 * 109.47687 * 300.00275 * 14 13 12 34 34 H 1.09002 * 109.47633 * 60.00402 * 14 13 12 35 35 H 0.97002 * 119.99980 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.46883 * 190.29488 * 23 8 7 37 37 H 1.08995 * 109.46617 * 310.27080 * 23 8 7 38 38 H 1.08999 * 109.67943 * 76.81423 * 24 5 4 39 39 H 1.08997 * 109.68844 * 316.25144 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5456 -0.6604 -0.0003 6 6 2.2563 -1.0854 0.0005 7 6 1.8438 -2.5362 0.0055 8 6 3.0537 -3.3817 0.4214 9 1 3.2694 -3.2127 1.4765 10 6 2.7476 -4.8403 0.1988 11 8 1.6742 -5.1712 -0.2468 12 8 3.6693 -5.7717 0.4901 13 6 3.3077 -7.1563 0.2446 14 6 4.4751 -8.0651 0.6345 15 6 4.1001 -9.5022 0.3792 16 1 3.1266 -9.7432 -0.0216 17 6 4.9998 -10.5093 0.6572 18 7 6.1850 -10.2158 1.1457 19 14 4.5346 -12.2906 0.3413 20 1 3.1554 -12.3527 -0.2057 21 1 5.4817 -12.8835 -0.6370 22 1 4.5973 -13.0519 1.6148 23 6 4.2698 -2.9817 -0.4184 24 6 4.7400 -1.5816 -0.0013 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5141 28 1 4.4106 1.3707 -0.0003 29 1 1.5172 -2.8285 -0.9926 30 1 1.0307 -2.6842 0.7163 31 1 2.4321 -7.4144 0.8402 32 1 3.0801 -7.2903 -0.8130 33 1 5.3509 -7.8072 0.0392 34 1 4.7024 -7.9310 1.6921 35 1 6.8181 -10.9243 1.3410 36 1 5.0751 -3.6980 -0.2557 37 1 3.9966 -2.9759 -1.4735 38 1 5.1745 -1.6202 0.9976 39 1 5.4828 -1.2190 -0.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798767203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:13 Heat of formation + Delta-G solvation = -32.212857 kcal Electronic energy + Delta-G solvation = -21037.000117 eV Core-core repulsion = 17752.559010 eV Total energy + Delta-G solvation = -3284.441107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.75875 -40.10853 -36.85611 -35.90510 -33.87187 -33.36505 -30.63619 -30.40677 -29.73582 -26.81710 -25.49959 -24.12941 -22.64480 -21.21388 -21.00502 -20.29347 -18.86632 -17.60054 -16.79275 -16.28801 -15.98992 -15.88870 -15.47046 -14.62898 -14.43968 -14.39418 -14.11895 -13.66056 -13.30305 -13.15403 -12.92422 -12.78852 -12.60348 -12.37823 -12.02821 -11.72506 -11.28238 -11.08970 -11.06136 -10.91446 -10.79134 -10.67870 -10.64885 -10.15692 -9.67771 -9.63079 -9.44481 -9.29963 -8.46740 -8.37302 -6.12533 -4.16887 1.66484 2.25778 2.49493 2.62559 3.09866 3.26022 3.33769 3.38641 4.26267 4.33850 4.41817 4.47242 4.65277 4.85306 4.87100 4.91285 5.11054 5.16471 5.23138 5.23538 5.24262 5.39441 5.45057 5.67948 5.72048 5.78141 6.04500 6.06218 6.06649 6.09842 6.14665 6.50097 6.61056 6.81539 6.95522 7.52105 7.53678 7.60053 7.84355 8.14356 8.23234 8.88929 9.47764 10.98986 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.002971 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.733887 B = 9421.139263 C = 9960.514481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.304 5.304 4 C 0.055 3.945 5 C -0.242 4.242 6 C 0.089 3.911 7 C -0.040 4.040 8 C -0.074 4.074 9 H 0.113 0.887 10 C 0.461 3.539 11 O -0.520 6.520 12 O -0.353 6.353 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.113 4.113 24 C -0.037 4.037 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 20.549 -1.655 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.125 5.125 4 C -0.129 4.129 5 C -0.253 4.253 6 C -0.040 4.040 7 C -0.079 4.079 8 C -0.093 4.093 9 H 0.131 0.869 10 C 0.304 3.696 11 O -0.409 6.409 12 O -0.269 6.269 13 C 0.002 3.998 14 C -0.013 4.013 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.151 4.151 24 C -0.075 4.075 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.200 0.800 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.645 21.347 -1.727 22.740 hybrid contribution 0.105 -1.714 -0.158 1.724 sum -7.541 19.633 -1.885 21.116 Atomic orbital electron populations 1.21875 0.74344 1.04524 1.03515 1.48172 1.06458 1.03400 1.56904 1.77511 1.01593 1.07459 1.25966 1.23568 0.95190 0.94445 0.99722 1.19978 0.94199 0.93902 1.17203 1.20788 0.91155 0.90368 1.01665 1.20134 0.97341 0.86220 1.04185 1.20956 0.96883 0.87730 1.03758 0.86923 1.23354 0.82530 0.89274 0.74418 1.90625 1.25192 1.83168 1.41959 1.86518 1.44181 1.19395 1.76758 1.23658 1.01353 0.74280 1.00480 1.19171 0.91994 0.91951 0.98163 1.21016 1.01085 0.90373 1.43984 0.92240 1.24980 0.94843 0.99468 0.94858 1.69979 1.06293 1.32959 1.43561 0.86426 0.78662 0.84289 0.78000 1.19604 1.20814 1.20821 1.21648 0.96486 0.97540 0.99419 1.20000 0.93871 0.91640 1.01981 0.90638 0.89370 0.89264 0.80022 0.88497 0.89536 0.92339 0.92295 0.95303 0.95337 0.92741 0.89173 0.91064 0.90676 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.32 59.85 0.68 1.38 16 2 N -0.37 -4.05 4.00 -63.88 -0.26 -4.31 16 3 N -0.30 -3.73 12.59 30.54 0.38 -3.35 16 4 C 0.06 0.59 12.00 -17.49 -0.21 0.38 16 5 C -0.24 -2.61 5.91 -105.06 -0.62 -3.23 16 6 C 0.09 0.99 6.73 -82.33 -0.55 0.44 16 7 C -0.04 -0.43 4.63 -27.64 -0.13 -0.56 16 8 C -0.07 -0.88 2.60 -91.53 -0.24 -1.11 16 9 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 10 C 0.46 7.53 7.26 36.00 0.26 7.79 16 11 O -0.52 -9.63 15.57 -18.76 -0.29 -9.93 16 12 O -0.35 -6.72 9.93 -39.26 -0.39 -7.11 16 13 C 0.07 1.62 5.40 37.15 0.20 1.82 16 14 C 0.02 0.62 5.35 -27.89 -0.15 0.48 16 15 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.11 -1.22 5.19 -26.44 -0.14 -1.36 16 24 C -0.04 -0.34 6.28 -27.58 -0.17 -0.51 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.10 1.10 7.79 -51.93 -0.40 0.69 16 30 H 0.09 0.85 7.76 -51.93 -0.40 0.45 16 31 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 37 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -32.84 329.91 -7.14 -39.98 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.80 Total: -3.26 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.48 Total: -7.83 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.87 Total: -33.00 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.68 Total: -17.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.84 -7.14 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798767203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.769 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds