Wall clock time and date at job start Tue Mar 31 2020 01:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40303 * 126.09310 * 2 1 4 4 C 1.31067 * 108.26654 * 180.02562 * 3 2 1 5 5 C 1.39291 * 108.08493 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.09315 * 179.97438 * 2 1 3 7 7 C 1.50827 * 128.03122 * 359.79092 * 6 2 1 8 8 C 1.53357 * 108.38266 * 196.66289 * 7 6 2 9 9 H 1.09006 * 109.46301 * 70.06352 * 8 7 6 10 10 C 1.50697 * 109.46907 * 190.04748 * 8 7 6 11 11 O 1.20833 * 119.99747 * 0.03756 * 10 8 7 12 12 O 1.34230 * 120.00262 * 179.75378 * 10 8 7 13 13 C 1.45202 * 116.99836 * 180.27336 * 12 10 8 14 14 C 1.52994 * 109.46919 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47473 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99561 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00335 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00015 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47550 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46870 * 119.99861 * 19 17 15 22 22 H 1.48500 * 109.47251 * 239.99905 * 19 17 15 23 23 C 1.53107 * 109.50501 * 310.05863 * 8 7 6 24 24 C 1.50836 * 127.90078 * 179.97438 * 5 4 3 25 25 H 1.08995 * 109.46950 * 89.97372 * 1 2 3 26 26 H 1.08995 * 109.46939 * 209.97446 * 1 2 3 27 27 H 1.08999 * 109.46838 * 329.98041 * 1 2 3 28 28 H 1.08006 * 125.95294 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.68323 * 76.93585 * 7 6 2 30 30 H 1.09003 * 109.68059 * 316.38253 * 7 6 2 31 31 H 1.08998 * 109.47630 * 300.00638 * 13 12 10 32 32 H 1.09004 * 109.46770 * 60.01042 * 13 12 10 33 33 H 1.08997 * 109.47687 * 300.00275 * 14 13 12 34 34 H 1.09002 * 109.47633 * 60.00402 * 14 13 12 35 35 H 0.97002 * 119.99980 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.46883 * 190.29488 * 23 8 7 37 37 H 1.08995 * 109.46617 * 310.27080 * 23 8 7 38 38 H 1.08999 * 109.67943 * 76.81423 * 24 5 4 39 39 H 1.08997 * 109.68844 * 316.25144 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5456 -0.6604 -0.0003 6 6 2.2563 -1.0854 0.0005 7 6 1.8438 -2.5362 0.0055 8 6 3.0537 -3.3817 0.4214 9 1 3.2694 -3.2127 1.4765 10 6 2.7476 -4.8403 0.1988 11 8 1.6742 -5.1712 -0.2468 12 8 3.6693 -5.7717 0.4901 13 6 3.3077 -7.1563 0.2446 14 6 4.4751 -8.0651 0.6345 15 6 4.1001 -9.5022 0.3792 16 1 3.1266 -9.7432 -0.0216 17 6 4.9998 -10.5093 0.6572 18 7 6.1850 -10.2158 1.1457 19 14 4.5346 -12.2906 0.3413 20 1 3.1554 -12.3527 -0.2057 21 1 5.4817 -12.8835 -0.6370 22 1 4.5973 -13.0519 1.6148 23 6 4.2698 -2.9817 -0.4184 24 6 4.7400 -1.5816 -0.0013 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5141 28 1 4.4106 1.3707 -0.0003 29 1 1.5172 -2.8285 -0.9926 30 1 1.0307 -2.6842 0.7163 31 1 2.4321 -7.4144 0.8402 32 1 3.0801 -7.2903 -0.8130 33 1 5.3509 -7.8072 0.0392 34 1 4.7024 -7.9310 1.6921 35 1 6.8181 -10.9243 1.3410 36 1 5.0751 -3.6980 -0.2557 37 1 3.9966 -2.9759 -1.4735 38 1 5.1745 -1.6202 0.9976 39 1 5.4828 -1.2190 -0.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798767203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:13 Heat of formation + Delta-G solvation = -50.840502 kcal Electronic energy + Delta-G solvation = -21037.807872 eV Core-core repulsion = 17752.559010 eV Total energy + Delta-G solvation = -3285.248862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.58846 -41.47326 -38.09608 -37.14366 -35.43343 -34.61631 -32.40019 -31.26943 -30.80996 -27.50806 -27.25471 -25.42474 -23.54874 -22.92823 -21.95216 -21.54893 -19.73406 -19.00449 -18.23531 -17.68046 -17.53159 -17.04981 -16.58694 -16.32576 -15.50836 -15.27162 -15.06227 -14.57833 -14.48740 -14.34413 -14.32890 -13.88843 -13.72671 -13.23700 -13.12340 -13.04600 -12.83462 -12.68220 -12.60037 -12.54822 -11.95510 -11.89622 -11.67138 -11.51019 -11.46236 -11.42298 -11.19016 -10.60741 -10.23951 -9.16275 -8.26305 -6.39138 0.85758 1.15854 1.41385 1.42182 1.48511 1.56225 1.83084 1.84061 2.40763 3.08368 3.36229 3.53602 3.70176 3.73448 3.89325 4.12471 4.24244 4.26429 4.32080 4.32915 4.35526 4.44633 4.52056 4.60210 4.65849 4.72082 4.85799 4.93370 5.04985 5.19141 5.27899 5.30280 5.37574 5.49085 5.56709 5.75806 5.76405 6.07397 6.08171 6.71217 6.73110 6.76181 7.30737 8.86415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.002971 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.733887 B = 9421.139263 C = 9960.514481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.374 5.374 3 N -0.333 5.333 4 C 0.052 3.948 5 C -0.251 4.251 6 C 0.079 3.921 7 C -0.032 4.032 8 C -0.064 4.064 9 H 0.129 0.871 10 C 0.462 3.538 11 O -0.541 6.541 12 O -0.360 6.360 13 C 0.090 3.910 14 C 0.031 3.969 15 C -0.549 4.549 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.276 1.276 23 C -0.111 4.111 24 C -0.029 4.029 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.209 0.791 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 20.867 -1.800 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.156 5.156 3 N -0.155 5.155 4 C -0.132 4.132 5 C -0.262 4.262 6 C -0.050 4.050 7 C -0.070 4.070 8 C -0.084 4.084 9 H 0.147 0.853 10 C 0.307 3.693 11 O -0.431 6.431 12 O -0.276 6.276 13 C 0.017 3.983 14 C -0.007 4.007 15 C -0.587 4.587 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.149 4.149 24 C -0.067 4.067 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.225 0.775 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.175 21.691 -1.875 23.256 hybrid contribution 0.249 -1.729 -0.114 1.751 sum -7.926 19.962 -1.989 21.570 Atomic orbital electron populations 1.22160 0.72664 1.05732 1.04543 1.48470 1.07582 1.02972 1.56527 1.77466 1.02499 1.08479 1.27070 1.24034 0.95554 0.94803 0.98804 1.20237 0.94536 0.94320 1.17121 1.20846 0.91625 0.90381 1.02174 1.20035 0.96957 0.85963 1.04091 1.21051 0.98018 0.84304 1.05005 0.85308 1.24216 0.81631 0.90249 0.73253 1.90615 1.25980 1.83622 1.42898 1.86510 1.45246 1.18530 1.77317 1.23155 0.99336 0.75536 1.00271 1.18976 0.92733 0.92593 0.96359 1.21409 1.01469 0.91617 1.44220 0.91790 1.25936 0.94649 1.04318 0.94330 1.70093 1.07412 1.34674 1.44344 0.85300 0.78725 0.78300 0.78120 1.18669 1.20092 1.20103 1.21650 0.95658 0.98522 0.99076 1.19994 0.93661 0.90034 1.03019 0.89692 0.87877 0.88418 0.77490 0.89119 0.88577 0.92246 0.92231 0.97368 0.97472 0.92342 0.89806 0.91342 0.89639 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 11.32 127.77 1.45 2.59 16 2 N -0.37 -7.72 4.00 -356.01 -1.43 -9.14 16 3 N -0.33 -7.74 12.59 -57.28 -0.72 -8.47 16 4 C 0.05 1.01 12.00 85.06 1.02 2.03 16 5 C -0.25 -4.95 5.91 -20.15 -0.12 -5.07 16 6 C 0.08 1.63 6.73 41.64 0.28 1.91 16 7 C -0.03 -0.64 4.63 30.01 0.14 -0.50 16 8 C -0.06 -1.44 2.60 -11.39 -0.03 -1.47 16 9 H 0.13 2.53 8.11 -2.38 -0.02 2.51 16 10 C 0.46 14.76 7.26 71.23 0.52 15.28 16 11 O -0.54 -19.70 15.57 21.94 0.34 -19.35 16 12 O -0.36 -13.69 9.93 -51.41 -0.51 -14.20 16 13 C 0.09 3.94 5.40 71.98 0.39 4.33 16 14 C 0.03 1.61 5.35 29.85 0.16 1.77 16 15 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 19 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 23 C -0.11 -2.25 5.19 30.78 0.16 -2.09 16 24 C -0.03 -0.47 6.28 30.05 0.19 -0.28 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.97 7.57 -2.39 -0.02 0.95 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.21 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.09 1.96 7.79 -2.39 -0.02 1.94 16 30 H 0.10 1.73 7.76 -2.39 -0.02 1.71 16 31 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 32 H 0.06 2.58 8.13 -2.38 -0.02 2.56 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.08 1.82 7.86 -2.39 -0.02 1.80 16 37 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.84 329.91 5.88 -63.96 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.04 Total: 7.74 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.85 Total: -11.19 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.86 Total: -72.13 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.17 Total: -33.55 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.84 5.88 -63.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798767203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.119 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds