Wall clock time and date at job start Tue Mar 31 2020 00:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47345 * 2 1 4 4 C 1.34772 * 120.00326 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99949 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99993 * 179.97438 * 4 3 2 7 7 O 1.42905 * 109.47140 * 179.97438 * 6 4 3 8 8 C 1.36002 * 116.99947 * 179.97438 * 7 6 4 9 9 C 1.38702 * 119.97897 * 180.02562 * 8 7 6 10 10 C 1.38106 * 120.02064 * 180.02562 * 9 8 7 11 11 C 1.38864 * 119.97742 * 359.97438 * 10 9 8 12 12 N 1.39942 * 120.01613 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99708 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46922 * 90.00621 * 18 16 14 20 20 H 1.48500 * 109.47411 * 210.00442 * 18 16 14 21 21 H 1.48494 * 109.47378 * 330.00637 * 18 16 14 22 22 C 1.38861 * 119.96179 * 0.26979 * 11 10 9 23 23 C 1.38108 * 119.98073 * 359.47741 * 22 11 10 24 24 H 1.09010 * 109.47365 * 299.99801 * 1 2 3 25 25 H 1.08998 * 109.47543 * 59.99995 * 1 2 3 26 26 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47320 * 240.00329 * 2 1 3 28 28 H 1.08998 * 109.47543 * 120.00005 * 2 1 3 29 29 H 0.96999 * 119.99839 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47250 * 59.99754 * 6 4 3 31 31 H 1.08998 * 109.47416 * 299.99494 * 6 4 3 32 32 H 1.08001 * 119.99072 * 0.02562 * 9 8 7 33 33 H 1.07992 * 120.01448 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00212 * 359.97438 * 12 11 10 35 35 H 1.09004 * 109.47073 * 299.99487 * 13 12 11 36 36 H 1.09000 * 109.47212 * 59.99569 * 13 12 11 37 37 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.00696 * 179.70598 * 22 11 10 39 39 H 1.07993 * 119.99058 * 180.25441 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8456 3.0483 -0.0011 7 8 5.2747 3.0484 -0.0010 8 6 5.8921 4.2602 -0.0020 9 6 7.2772 4.3323 -0.0025 10 6 7.9051 5.5624 -0.0030 11 6 7.1491 6.7272 -0.0036 12 7 7.7845 7.9741 -0.0046 13 6 6.9865 9.2028 -0.0058 14 6 7.9045 10.3979 -0.0061 15 1 8.9752 10.2564 -0.0060 16 6 7.3775 11.6719 -0.0077 17 7 6.0737 11.8443 -0.0084 18 14 8.5154 13.1534 -0.0074 19 1 8.8185 13.5450 -1.4074 20 1 7.8546 14.2851 0.6910 21 1 9.7777 12.8079 0.6942 22 6 5.7624 6.6541 0.0021 23 6 5.1363 5.4231 -0.0027 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3880 2.1185 -0.0004 30 1 3.4826 3.5624 0.8888 31 1 3.4821 3.5619 -0.8911 32 1 7.8650 3.4262 -0.0025 33 1 8.9835 5.6184 -0.0030 34 1 8.7531 8.0249 -0.0046 35 1 6.3578 9.2269 -0.8959 36 1 6.3575 9.2284 0.8841 37 1 5.7030 12.7406 -0.0092 38 1 5.1738 7.5596 0.0064 39 1 4.0578 5.3660 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819402453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:21 Heat of formation + Delta-G solvation = -53.336305 kcal Electronic energy + Delta-G solvation = -20139.433822 eV Core-core repulsion = 16854.076734 eV Total energy + Delta-G solvation = -3285.357088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24637 -39.28083 -37.44851 -35.56193 -34.47736 -32.49286 -31.40373 -30.56810 -29.07489 -27.76776 -25.87234 -23.48113 -23.11560 -21.90564 -20.75339 -20.66564 -18.13134 -17.40017 -17.00467 -16.46467 -16.22644 -15.65567 -15.34384 -15.28667 -14.67324 -14.06482 -13.99286 -13.92593 -13.27801 -13.17457 -12.94049 -12.82932 -12.39776 -12.26687 -12.13035 -12.03814 -11.86199 -11.83400 -11.10810 -10.90360 -10.78059 -10.48485 -10.16287 -9.96716 -9.44260 -9.41254 -9.05922 -8.59225 -8.44164 -6.36785 -6.23297 -4.28179 1.80380 2.15857 2.36627 2.48863 3.21301 3.27739 3.30608 3.73252 4.24124 4.35144 4.40789 4.59103 4.62859 4.66640 4.89395 4.92244 4.97139 5.14098 5.24981 5.36295 5.38773 5.48591 5.60971 5.79607 5.81909 6.05342 6.08552 6.45040 6.52505 6.84102 6.91239 7.00854 7.10030 7.21570 7.40905 7.59134 7.75969 7.93110 7.94080 8.29318 8.66631 8.89997 9.38382 10.87388 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036624 B = 0.002546 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.339112 B =10993.024027 C =11726.311402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.733 5.733 4 C 0.516 3.484 5 O -0.517 6.517 6 C 0.045 3.955 7 O -0.299 6.299 8 C 0.037 3.963 9 C -0.093 4.093 10 C -0.179 4.179 11 C 0.206 3.794 12 N -0.732 5.732 13 C 0.252 3.748 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.167 4.167 23 C -0.152 4.152 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.402 0.598 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.391 0.609 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.128 0.872 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -18.364 0.018 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.388 5.388 4 C 0.301 3.699 5 O -0.391 6.391 6 C -0.034 4.034 7 O -0.212 6.212 8 C -0.009 4.009 9 C -0.112 4.112 10 C -0.202 4.202 11 C 0.098 3.902 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.577 4.577 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.190 4.190 23 C -0.172 4.172 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.236 0.764 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.224 0.776 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.012 -18.875 0.024 21.366 hybrid contribution 0.261 1.525 -0.013 1.547 sum -9.752 -17.350 0.011 19.903 Atomic orbital electron populations 1.22012 0.94234 1.03358 1.02685 1.21304 0.94279 0.82576 1.02610 1.45900 1.06667 1.09279 1.76958 1.20272 0.82374 0.90880 0.76391 1.90744 1.55109 1.46036 1.47234 1.22260 0.83084 0.94472 1.03570 1.86077 1.17110 1.27388 1.90674 1.18575 0.92147 0.83068 1.07113 1.19991 0.90972 0.97545 1.02694 1.20366 0.99097 0.90492 1.10291 1.18033 0.91992 0.86544 0.93616 1.45481 1.08561 1.03049 1.78602 1.19079 0.91615 0.79822 0.96428 1.21210 0.93243 0.90605 1.52598 0.91962 1.24933 0.95290 0.99136 0.94677 1.69937 1.10629 1.22793 1.49419 0.86406 0.80533 0.81697 0.78258 1.20447 1.20990 1.19747 1.20546 0.93079 0.97508 1.07867 1.20882 0.98875 0.91944 1.05485 0.91834 0.91841 0.90680 0.91372 0.91367 0.76350 0.89381 0.89376 0.85947 0.86015 0.77563 0.96303 0.96297 0.92477 0.85397 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.03 37.15 0.37 -0.27 16 2 C 0.12 0.79 6.39 -4.05 -0.03 0.76 16 3 N -0.73 -5.55 5.56 -60.30 -0.33 -5.88 16 4 C 0.52 6.03 7.91 -10.99 -0.09 5.95 16 5 O -0.52 -8.47 16.50 -14.36 -0.24 -8.71 16 6 C 0.05 0.50 5.22 36.01 0.19 0.69 16 7 O -0.30 -4.67 9.67 -39.65 -0.38 -5.05 16 8 C 0.04 0.59 6.69 -39.24 -0.26 0.33 16 9 C -0.09 -1.50 9.98 -39.46 -0.39 -1.89 16 10 C -0.18 -3.00 9.89 -39.40 -0.39 -3.39 16 11 C 0.21 3.95 6.66 -83.69 -0.56 3.39 16 12 N -0.73 -15.41 5.74 -59.75 -0.34 -15.75 16 13 C 0.25 6.31 4.67 -5.19 -0.02 6.29 16 14 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 15 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.17 -3.07 9.31 -39.40 -0.37 -3.44 16 23 C -0.15 -2.40 9.03 -39.46 -0.36 -2.76 16 24 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.40 1.78 8.47 -40.82 -0.35 1.44 16 30 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 31 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.39 7.65 8.34 -40.82 -0.34 7.31 16 35 H 0.02 0.51 7.96 -51.93 -0.41 0.10 16 36 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 2.48 6.73 -52.48 -0.35 2.12 16 39 H 0.12 1.47 6.29 -52.49 -0.33 1.14 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -32.79 335.88 -8.32 -41.11 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.48 Total: 5.58 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.32 Total: -7.50 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.06 Total: -46.20 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.62 Total: -13.76 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.79 -8.32 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819402453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.221 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds