Wall clock time and date at job start Tue Mar 31 2020 00:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47345 * 2 1 4 4 C 1.34772 * 120.00326 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99949 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99993 * 179.97438 * 4 3 2 7 7 O 1.42905 * 109.47140 * 179.97438 * 6 4 3 8 8 C 1.36002 * 116.99947 * 179.97438 * 7 6 4 9 9 C 1.38702 * 119.97897 * 180.02562 * 8 7 6 10 10 C 1.38106 * 120.02064 * 180.02562 * 9 8 7 11 11 C 1.38864 * 119.97742 * 359.97438 * 10 9 8 12 12 N 1.39942 * 120.01613 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99708 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46922 * 90.00621 * 18 16 14 20 20 H 1.48500 * 109.47411 * 210.00442 * 18 16 14 21 21 H 1.48494 * 109.47378 * 330.00637 * 18 16 14 22 22 C 1.38861 * 119.96179 * 0.26979 * 11 10 9 23 23 C 1.38108 * 119.98073 * 359.47741 * 22 11 10 24 24 H 1.09010 * 109.47365 * 299.99801 * 1 2 3 25 25 H 1.08998 * 109.47543 * 59.99995 * 1 2 3 26 26 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47320 * 240.00329 * 2 1 3 28 28 H 1.08998 * 109.47543 * 120.00005 * 2 1 3 29 29 H 0.96999 * 119.99839 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47250 * 59.99754 * 6 4 3 31 31 H 1.08998 * 109.47416 * 299.99494 * 6 4 3 32 32 H 1.08001 * 119.99072 * 0.02562 * 9 8 7 33 33 H 1.07992 * 120.01448 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00212 * 359.97438 * 12 11 10 35 35 H 1.09004 * 109.47073 * 299.99487 * 13 12 11 36 36 H 1.09000 * 109.47212 * 59.99569 * 13 12 11 37 37 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.00696 * 179.70598 * 22 11 10 39 39 H 1.07993 * 119.99058 * 180.25441 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8456 3.0483 -0.0011 7 8 5.2747 3.0484 -0.0010 8 6 5.8921 4.2602 -0.0020 9 6 7.2772 4.3323 -0.0025 10 6 7.9051 5.5624 -0.0030 11 6 7.1491 6.7272 -0.0036 12 7 7.7845 7.9741 -0.0046 13 6 6.9865 9.2028 -0.0058 14 6 7.9045 10.3979 -0.0061 15 1 8.9752 10.2564 -0.0060 16 6 7.3775 11.6719 -0.0077 17 7 6.0737 11.8443 -0.0084 18 14 8.5154 13.1534 -0.0074 19 1 8.8185 13.5450 -1.4074 20 1 7.8546 14.2851 0.6910 21 1 9.7777 12.8079 0.6942 22 6 5.7624 6.6541 0.0021 23 6 5.1363 5.4231 -0.0027 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3880 2.1185 -0.0004 30 1 3.4826 3.5624 0.8888 31 1 3.4821 3.5619 -0.8911 32 1 7.8650 3.4262 -0.0025 33 1 8.9835 5.6184 -0.0030 34 1 8.7531 8.0249 -0.0046 35 1 6.3578 9.2269 -0.8959 36 1 6.3575 9.2284 0.8841 37 1 5.7030 12.7406 -0.0092 38 1 5.1738 7.5596 0.0064 39 1 4.0578 5.3660 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819402453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:20 Heat of formation + Delta-G solvation = -75.682394 kcal Electronic energy + Delta-G solvation = -20140.402821 eV Core-core repulsion = 16854.076734 eV Total energy + Delta-G solvation = -3286.326087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.31290 -40.41533 -38.75285 -36.37362 -36.11704 -34.38162 -32.18249 -31.81257 -30.46724 -28.96497 -27.49221 -24.98077 -24.05719 -23.10635 -22.15442 -21.67087 -19.36682 -18.93807 -18.13963 -17.45174 -17.37526 -16.99669 -16.85850 -16.16159 -16.08056 -15.46516 -15.19358 -15.03270 -14.69402 -14.61385 -14.14987 -13.98338 -13.76165 -13.42190 -13.32474 -13.19621 -12.79125 -12.69983 -12.69050 -12.39425 -12.19893 -12.13295 -11.66933 -11.40901 -10.96648 -10.81972 -10.26749 -10.17208 -9.86818 -8.29911 -7.88163 -6.42911 0.47561 0.79231 1.41794 1.42687 1.46843 1.53853 1.64086 2.34922 2.76989 2.97897 2.98558 3.05943 3.65115 3.99556 4.03377 4.14199 4.14725 4.15571 4.24615 4.47435 4.52474 4.55853 4.73069 4.93159 5.00427 5.06343 5.11268 5.26598 5.28265 5.33401 5.39355 5.46895 5.53339 5.56498 5.78555 5.92360 6.38534 6.49305 6.59400 6.79313 7.14360 7.19996 7.31644 8.81820 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036624 B = 0.002546 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.339112 B =10993.024027 C =11726.311402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 N -0.712 5.712 4 C 0.514 3.486 5 O -0.573 6.573 6 C 0.036 3.964 7 O -0.318 6.318 8 C 0.046 3.954 9 C -0.101 4.101 10 C -0.168 4.168 11 C 0.177 3.823 12 N -0.739 5.739 13 C 0.274 3.726 14 C -0.557 4.557 15 H 0.070 0.930 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.976 3.024 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.183 4.183 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.420 0.580 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.397 0.603 35 H -0.009 1.009 36 H -0.009 1.009 37 H 0.269 0.731 38 H 0.109 0.891 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 -18.854 0.017 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.367 5.367 4 C 0.300 3.700 5 O -0.452 6.452 6 C -0.042 4.042 7 O -0.232 6.232 8 C 0.000 4.000 9 C -0.120 4.120 10 C -0.191 4.191 11 C 0.071 3.929 12 N -0.367 5.367 13 C 0.150 3.850 14 C -0.595 4.595 15 H 0.088 0.912 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.207 4.207 23 C -0.166 4.166 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.231 0.769 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.564 -19.401 0.023 22.090 hybrid contribution 0.272 1.476 -0.013 1.501 sum -10.292 -17.925 0.010 20.669 Atomic orbital electron populations 1.21963 0.91522 1.04322 1.03508 1.21423 0.96383 0.81831 1.01619 1.45814 1.05672 1.10451 1.74792 1.20479 0.83185 0.90569 0.75750 1.90725 1.56698 1.47477 1.50299 1.22620 0.80840 0.94654 1.06062 1.86064 1.19808 1.26912 1.90456 1.18714 0.92408 0.83465 1.05373 1.20288 0.91551 0.97912 1.02222 1.20543 1.00072 0.89729 1.08773 1.18294 0.92594 0.86425 0.95540 1.45117 1.08414 1.02573 1.80553 1.18533 0.91182 0.81461 0.93786 1.21606 0.93884 0.91509 1.52523 0.91215 1.25897 0.96855 1.02305 0.94058 1.70063 1.12509 1.23655 1.50205 0.85279 0.78547 0.77643 0.78511 1.19734 1.20582 1.18770 1.20584 0.93042 0.98025 1.09029 1.21106 1.00652 0.90553 1.04241 0.90966 0.90973 0.89712 0.92449 0.92445 0.74213 0.86732 0.86725 0.84162 0.84025 0.76897 0.99092 0.99074 0.92227 0.87334 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.03 71.98 0.72 -0.11 16 2 C 0.11 1.37 6.39 86.38 0.55 1.92 16 3 N -0.71 -9.34 5.56 -463.08 -2.57 -11.91 16 4 C 0.51 11.28 7.91 87.66 0.69 11.98 16 5 O -0.57 -18.71 16.50 15.99 0.26 -18.44 16 6 C 0.04 0.71 5.22 71.24 0.37 1.08 16 7 O -0.32 -9.34 9.67 -74.53 -0.72 -10.06 16 8 C 0.05 1.41 6.69 22.49 0.15 1.56 16 9 C -0.10 -3.09 9.98 22.35 0.22 -2.86 16 10 C -0.17 -5.47 9.89 22.39 0.22 -5.25 16 11 C 0.18 6.81 6.66 38.15 0.25 7.06 16 12 N -0.74 -31.83 5.74 -342.96 -1.97 -33.79 16 13 C 0.27 14.27 4.67 85.63 0.40 14.67 16 14 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 15 H 0.07 3.60 7.60 -2.91 -0.02 3.58 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -53.67 13.29 21.45 0.28 -53.38 16 18 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 C -0.18 -6.84 9.31 22.39 0.21 -6.63 16 23 C -0.15 -4.38 9.03 22.35 0.20 -4.18 16 24 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 25 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.42 2.45 8.47 -92.71 -0.79 1.67 16 30 H 0.12 1.65 7.66 -2.39 -0.02 1.63 16 31 H 0.12 1.65 7.66 -2.39 -0.02 1.64 16 32 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.40 15.70 8.34 -92.71 -0.77 14.92 16 35 H -0.01 -0.49 7.96 -2.38 -0.02 -0.51 16 36 H -0.01 -0.48 7.94 -2.39 -0.02 -0.50 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.11 4.42 6.73 -2.91 -0.02 4.40 16 39 H 0.15 3.35 6.29 -2.91 -0.02 3.33 16 Total: -1.00 -72.72 335.88 1.52 -71.19 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.49 Total: 21.94 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.70 Total: -9.99 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.25 Total: -99.09 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.46 Total: -28.50 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.72 1.52 -71.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819402453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.489 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds