Wall clock time and date at job start Tue Mar 31 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45192 * 109.47158 * 2 1 4 4 C 1.34658 * 116.99959 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00264 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99913 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99952 * 5.07655 * 6 4 3 8 8 C 1.40196 * 119.99756 * 185.07185 * 6 4 3 9 9 C 1.38833 * 119.99681 * 292.42879 * 8 6 4 10 10 C 1.38077 * 120.00150 * 180.02562 * 9 8 6 11 11 C 1.38878 * 119.99906 * 0.02562 * 10 9 8 12 12 N 1.39916 * 120.00655 * 179.97438 * 11 10 9 13 13 C 1.46492 * 119.99914 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47362 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99350 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00487 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99941 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99641 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47272 * 89.99719 * 18 16 14 20 20 H 1.48500 * 109.46873 * 209.99396 * 18 16 14 21 21 H 1.48493 * 109.47319 * 329.99383 * 18 16 14 22 22 C 1.38879 * 119.98538 * 0.25121 * 11 10 9 23 23 C 1.38070 * 120.00005 * 359.51338 * 22 11 10 24 24 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47270 * 299.99966 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00318 * 1 2 3 27 27 H 1.09005 * 109.46928 * 239.99846 * 2 1 3 28 28 H 1.09000 * 109.46610 * 120.00191 * 2 1 3 29 29 H 1.09007 * 109.46993 * 269.99773 * 7 6 4 30 30 H 1.09004 * 109.47085 * 29.99619 * 7 6 4 31 31 H 1.09001 * 109.47097 * 149.99710 * 7 6 4 32 32 H 1.07994 * 119.99951 * 359.97438 * 9 8 6 33 33 H 1.08006 * 120.00046 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99424 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47439 * 300.00321 * 13 12 11 36 36 H 1.09006 * 109.47007 * 59.99776 * 13 12 11 37 37 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00021 * 179.75158 * 22 11 10 39 39 H 1.08000 * 120.00433 * 180.22963 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0892 0.5817 0.0015 6 7 3.8642 2.7908 0.0000 7 6 2.9763 3.9508 0.1112 8 6 5.2497 2.9762 -0.1067 9 6 6.0852 2.5766 0.9275 10 6 7.4498 2.7596 0.8227 11 6 7.9865 3.3439 -0.3172 12 7 9.3691 3.5299 -0.4233 13 6 9.9351 4.1458 -1.6260 14 6 11.4334 4.2308 -1.4893 15 1 11.9158 3.8625 -0.5959 16 6 12.1885 4.7778 -2.5050 17 7 13.4961 4.8525 -2.3853 18 14 11.3541 5.4141 -4.0504 19 1 11.0080 6.8471 -3.8718 20 1 12.2749 5.2677 -5.2061 21 1 10.1162 4.6335 -4.3017 22 6 7.1499 3.7488 -1.3492 23 6 5.7859 3.5612 -1.2461 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6726 4.2726 -0.8850 30 1 2.0936 3.6786 0.6899 31 1 3.5020 4.7642 0.6113 32 1 5.6678 2.1234 1.8145 33 1 8.0997 2.4491 1.6275 34 1 9.9529 3.2504 0.2991 35 1 9.6831 3.5408 -2.4970 36 1 9.5243 5.1480 -1.7487 37 1 14.0273 5.2376 -3.0997 38 1 7.5666 4.2068 -2.2340 39 1 5.1356 3.8726 -2.0502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819424158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:35 Heat of formation + Delta-G solvation = -46.319369 kcal Electronic energy + Delta-G solvation = -20827.599106 eV Core-core repulsion = 17542.546295 eV Total energy + Delta-G solvation = -3285.052811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75024 -39.08387 -37.09110 -35.80824 -34.43088 -32.52383 -31.80663 -30.64470 -29.23668 -27.19316 -26.29601 -23.72836 -23.05532 -22.19955 -21.19596 -20.19810 -18.14051 -17.64821 -17.33703 -16.86106 -16.08908 -15.78566 -15.36794 -14.71734 -14.14003 -13.87746 -13.74478 -13.50882 -13.44216 -13.10416 -13.07588 -12.97529 -12.70196 -12.47857 -12.17266 -12.05664 -11.96301 -11.80930 -10.99283 -10.86846 -10.73256 -10.67769 -10.51046 -10.03711 -9.65285 -9.51726 -8.89931 -8.71709 -8.60924 -6.74162 -6.25486 -4.27784 1.73532 1.79031 2.15073 2.79175 3.19226 3.26956 3.28771 3.79345 4.20701 4.24768 4.30757 4.67856 4.72284 5.02306 5.03569 5.08772 5.19820 5.27353 5.27743 5.32755 5.48770 5.58222 5.64308 5.71524 5.82536 5.92752 6.15500 6.26934 6.32788 6.59323 6.74459 6.79470 6.84437 6.95244 7.18942 7.30505 7.36281 7.87618 8.30964 8.34415 8.52091 8.77122 9.33374 10.86933 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037318 B = 0.003107 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.127539 B = 9010.205696 C = 9227.269850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.645 3.355 5 O -0.559 6.559 6 N -0.542 5.542 7 C 0.087 3.913 8 C 0.053 3.947 9 C -0.045 4.045 10 C -0.203 4.203 11 C 0.240 3.760 12 N -0.718 5.718 13 C 0.221 3.779 14 C -0.542 4.542 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.891 5.891 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.198 4.198 23 C -0.060 4.060 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.399 0.601 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.268 0.732 38 H 0.126 0.874 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.897 -3.988 4.938 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 O -0.286 6.286 4 C 0.400 3.600 5 O -0.446 6.446 6 N -0.278 5.278 7 C -0.055 4.055 8 C -0.038 4.038 9 C -0.065 4.065 10 C -0.227 4.227 11 C 0.130 3.870 12 N -0.341 5.341 13 C 0.098 3.902 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.705 3.295 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.222 4.222 23 C -0.080 4.080 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.233 0.767 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.443 -4.180 4.642 25.229 hybrid contribution -0.021 0.185 -0.617 0.645 sum -24.464 -3.995 4.025 25.113 Atomic orbital electron populations 1.21820 0.92643 1.02984 1.03432 1.22932 0.94662 0.78992 1.02834 1.86228 1.22256 1.32948 1.87160 1.18146 0.80967 0.84216 0.76690 1.91020 1.59681 1.39196 1.54739 1.43772 1.05378 1.03397 1.75205 1.21824 0.93774 0.87864 1.02027 1.16856 0.79869 1.10584 0.96502 1.20729 0.92647 0.96340 0.96823 1.20409 0.94650 1.08821 0.98797 1.18134 0.85177 0.90837 0.92898 1.45319 1.02202 1.64561 1.21980 1.19525 0.94809 0.92261 0.83558 1.21059 0.88864 1.42319 1.05727 0.90307 1.24829 0.94737 0.94907 0.98320 1.69882 1.04792 1.44421 1.33771 0.86798 0.79956 0.79883 0.82835 1.19832 1.20834 1.18750 1.20523 0.92314 1.09013 1.00315 1.20785 0.94560 0.97534 0.95159 0.90079 0.91541 0.91510 0.91189 0.91236 0.92499 0.90623 0.90475 0.86727 0.86033 0.76689 0.96284 0.96722 0.92221 0.85592 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.08 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -4.43 9.10 -40.37 -0.37 -4.79 16 4 C 0.65 9.57 8.27 54.06 0.45 10.01 16 5 O -0.56 -10.15 15.71 -19.28 -0.30 -10.45 16 6 N -0.54 -7.35 2.93 -126.21 -0.37 -7.72 16 7 C 0.09 0.82 10.31 59.85 0.62 1.44 16 8 C 0.05 0.82 4.82 -83.59 -0.40 0.42 16 9 C -0.05 -0.71 9.33 -39.42 -0.37 -1.08 16 10 C -0.20 -3.32 9.89 -39.40 -0.39 -3.71 16 11 C 0.24 4.38 6.66 -83.69 -0.56 3.83 16 12 N -0.72 -14.52 5.73 -59.76 -0.34 -14.87 16 13 C 0.22 5.14 3.73 -5.20 -0.02 5.12 16 14 C -0.54 -14.73 9.83 -34.44 -0.34 -15.07 16 15 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 18 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 22 C -0.20 -3.46 9.31 -39.41 -0.37 -3.83 16 23 C -0.06 -0.93 9.85 -39.42 -0.39 -1.32 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.61 7.46 -51.93 -0.39 0.22 16 31 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.40 7.68 8.33 -40.82 -0.34 7.34 16 35 H 0.02 0.46 7.02 -51.93 -0.36 0.09 16 36 H 0.02 0.35 7.37 -51.93 -0.38 -0.04 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.13 2.23 6.73 -52.49 -0.35 1.88 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -31.86 333.73 -7.13 -38.99 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.63 Total: 5.18 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.25 Total: -1.71 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.06 Total: -48.16 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.67 Total: -15.25 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.86 -7.13 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819424158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.328 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds