Wall clock time and date at job start Tue Mar 31 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45192 * 109.47158 * 2 1 4 4 C 1.34658 * 116.99959 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00264 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99913 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99952 * 5.07655 * 6 4 3 8 8 C 1.40196 * 119.99756 * 185.07185 * 6 4 3 9 9 C 1.38833 * 119.99681 * 292.42879 * 8 6 4 10 10 C 1.38077 * 120.00150 * 180.02562 * 9 8 6 11 11 C 1.38878 * 119.99906 * 0.02562 * 10 9 8 12 12 N 1.39916 * 120.00655 * 179.97438 * 11 10 9 13 13 C 1.46492 * 119.99914 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47362 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99350 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00487 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99941 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99641 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47272 * 89.99719 * 18 16 14 20 20 H 1.48500 * 109.46873 * 209.99396 * 18 16 14 21 21 H 1.48493 * 109.47319 * 329.99383 * 18 16 14 22 22 C 1.38879 * 119.98538 * 0.25121 * 11 10 9 23 23 C 1.38070 * 120.00005 * 359.51338 * 22 11 10 24 24 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47270 * 299.99966 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00318 * 1 2 3 27 27 H 1.09005 * 109.46928 * 239.99846 * 2 1 3 28 28 H 1.09000 * 109.46610 * 120.00191 * 2 1 3 29 29 H 1.09007 * 109.46993 * 269.99773 * 7 6 4 30 30 H 1.09004 * 109.47085 * 29.99619 * 7 6 4 31 31 H 1.09001 * 109.47097 * 149.99710 * 7 6 4 32 32 H 1.07994 * 119.99951 * 359.97438 * 9 8 6 33 33 H 1.08006 * 120.00046 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99424 * 0.02562 * 12 11 10 35 35 H 1.08995 * 109.47439 * 300.00321 * 13 12 11 36 36 H 1.09006 * 109.47007 * 59.99776 * 13 12 11 37 37 H 0.97001 * 119.99807 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00021 * 179.75158 * 22 11 10 39 39 H 1.08000 * 120.00433 * 180.22963 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0892 0.5817 0.0015 6 7 3.8642 2.7908 0.0000 7 6 2.9763 3.9508 0.1112 8 6 5.2497 2.9762 -0.1067 9 6 6.0852 2.5766 0.9275 10 6 7.4498 2.7596 0.8227 11 6 7.9865 3.3439 -0.3172 12 7 9.3691 3.5299 -0.4233 13 6 9.9351 4.1458 -1.6260 14 6 11.4334 4.2308 -1.4893 15 1 11.9158 3.8625 -0.5959 16 6 12.1885 4.7778 -2.5050 17 7 13.4961 4.8525 -2.3853 18 14 11.3541 5.4141 -4.0504 19 1 11.0080 6.8471 -3.8718 20 1 12.2749 5.2677 -5.2061 21 1 10.1162 4.6335 -4.3017 22 6 7.1499 3.7488 -1.3492 23 6 5.7859 3.5612 -1.2461 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6726 4.2726 -0.8850 30 1 2.0936 3.6786 0.6899 31 1 3.5020 4.7642 0.6113 32 1 5.6678 2.1234 1.8145 33 1 8.0997 2.4491 1.6275 34 1 9.9529 3.2504 0.2991 35 1 9.6831 3.5408 -2.4970 36 1 9.5243 5.1480 -1.7487 37 1 14.0273 5.2376 -3.0997 38 1 7.5666 4.2068 -2.2340 39 1 5.1356 3.8726 -2.0502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819424158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:34 Heat of formation + Delta-G solvation = -66.402952 kcal Electronic energy + Delta-G solvation = -20828.469996 eV Core-core repulsion = 17542.546295 eV Total energy + Delta-G solvation = -3285.923701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84710 -40.32389 -38.22607 -37.04214 -35.91330 -34.43361 -32.51565 -31.93162 -30.78609 -28.53503 -27.44230 -24.88678 -24.40368 -23.28658 -22.67030 -21.41087 -19.47332 -19.14217 -18.51979 -17.88202 -17.62700 -17.11345 -16.62976 -16.09254 -15.44389 -15.22699 -15.16079 -14.82744 -14.63382 -14.43701 -14.28459 -13.98808 -13.72527 -13.57128 -13.46613 -13.16574 -12.90858 -12.76094 -12.62319 -12.49640 -12.07161 -11.88414 -11.69916 -11.60204 -11.51965 -11.11086 -10.79204 -9.98110 -9.89047 -8.38375 -8.19015 -6.46405 0.47921 0.50461 1.12288 1.35987 1.37542 1.48487 1.66595 2.29756 2.74265 2.81718 2.96751 3.00896 3.96695 4.03699 4.05417 4.11113 4.23482 4.37499 4.46099 4.53782 4.59341 4.69916 4.70992 4.73794 4.91435 4.95220 5.03114 5.08632 5.11074 5.13246 5.30128 5.36344 5.44053 5.54300 5.60505 5.87524 6.07728 6.23500 6.51273 6.62569 6.98737 7.21114 7.21861 8.77410 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037318 B = 0.003107 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.127539 B = 9010.205696 C = 9227.269850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 O -0.363 6.363 4 C 0.643 3.357 5 O -0.600 6.600 6 N -0.542 5.542 7 C 0.082 3.918 8 C 0.059 3.941 9 C -0.051 4.051 10 C -0.199 4.199 11 C 0.217 3.783 12 N -0.730 5.730 13 C 0.237 3.763 14 C -0.551 4.551 15 H 0.044 0.956 16 C 0.016 3.984 17 N -0.939 5.939 18 Si 0.948 3.052 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.245 1.245 22 C -0.207 4.207 23 C -0.057 4.057 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.399 0.601 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.271 0.729 38 H 0.123 0.877 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.282 -3.559 4.282 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 O -0.277 6.277 4 C 0.398 3.602 5 O -0.491 6.491 6 N -0.278 5.278 7 C -0.058 4.058 8 C -0.032 4.032 9 C -0.072 4.072 10 C -0.222 4.222 11 C 0.110 3.890 12 N -0.355 5.355 13 C 0.113 3.887 14 C -0.589 4.589 15 H 0.062 0.938 16 C -0.183 4.183 17 N -0.578 5.578 18 Si 0.771 3.229 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.169 1.169 22 C -0.231 4.231 23 C -0.077 4.077 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.233 0.767 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.910 -3.743 4.013 28.445 hybrid contribution 0.904 -0.028 -0.290 0.950 sum -27.006 -3.772 3.723 27.521 Atomic orbital electron populations 1.21830 0.89718 1.04525 1.03879 1.23257 0.96825 0.77771 1.02447 1.86255 1.20364 1.34489 1.86620 1.18319 0.81631 0.84044 0.76161 1.90994 1.60786 1.40625 1.56648 1.43924 1.05067 1.04238 1.74562 1.22084 0.93654 0.86601 1.03489 1.17033 0.81058 1.09008 0.96134 1.20913 0.92442 0.96295 0.97517 1.20564 0.95216 1.07938 0.98528 1.18318 0.84230 0.92349 0.94141 1.45068 1.03171 1.65960 1.21281 1.19168 0.92109 0.92674 0.84757 1.21346 0.91229 1.41722 1.04579 0.93811 1.25806 0.95278 0.95126 1.02099 1.70026 1.06625 1.45928 1.35256 0.85699 0.79365 0.79847 0.78037 1.18553 1.20554 1.16875 1.20636 0.93170 1.09227 1.00045 1.20968 0.94027 0.96953 0.95742 0.87980 0.90939 0.91147 0.91843 0.91524 0.90909 0.89124 0.89471 0.85720 0.84773 0.76691 0.96556 0.96192 0.91974 0.85915 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.07 1.21 6.19 71.98 0.45 1.66 16 3 O -0.36 -7.91 9.10 -55.68 -0.51 -8.42 16 4 C 0.64 17.97 8.27 129.79 1.07 19.04 16 5 O -0.60 -21.29 15.71 19.81 0.31 -20.98 16 6 N -0.54 -13.39 2.93 -783.62 -2.30 -15.69 16 7 C 0.08 1.28 10.31 127.77 1.32 2.60 16 8 C 0.06 1.71 4.82 38.09 0.18 1.89 16 9 C -0.05 -1.54 9.33 22.37 0.21 -1.33 16 10 C -0.20 -6.33 9.89 22.38 0.22 -6.11 16 11 C 0.22 7.80 6.66 38.16 0.25 8.05 16 12 N -0.73 -29.75 5.73 -342.99 -1.97 -31.72 16 13 C 0.24 10.98 3.73 85.63 0.32 11.30 16 14 C -0.55 -30.71 9.83 25.60 0.25 -30.46 16 15 H 0.04 2.67 7.84 -2.91 -0.02 2.64 16 16 C 0.02 0.91 5.47 84.65 0.46 1.37 16 17 N -0.94 -56.93 13.96 21.45 0.30 -56.64 16 18 Si 0.95 42.14 27.47 68.60 1.88 44.03 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 22 C -0.21 -6.96 9.31 22.38 0.21 -6.75 16 23 C -0.06 -1.63 9.85 22.38 0.22 -1.41 16 24 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 1.16 7.46 -2.39 -0.02 1.14 16 31 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.40 15.83 8.33 -92.71 -0.77 15.05 16 35 H 0.02 0.78 7.02 -2.39 -0.02 0.76 16 36 H 0.02 0.92 7.37 -2.38 -0.02 0.90 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.12 4.17 6.73 -2.91 -0.02 4.15 16 39 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -69.58 333.73 3.86 -65.73 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.22 Total: 24.42 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.91 Total: -0.73 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -3.96 Total: -104.04 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.20 Total: -29.40 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Total: -69.58 3.86 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819424158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.676 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds