Wall clock time and date at job start Tue Mar 31 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47125 * 58.24725 * 3 2 1 5 5 C 1.37096 * 120.00360 * 99.05637 * 4 3 2 6 6 H 1.07992 * 120.00678 * 146.58079 * 5 4 3 7 7 C 1.38957 * 119.99513 * 326.86528 * 5 4 3 8 8 N 1.31409 * 120.00323 * 4.63779 * 7 5 4 9 9 Si 1.86800 * 119.99727 * 184.64218 * 7 5 4 10 10 H 1.48499 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47313 * 119.99700 * 9 7 5 12 12 H 1.48503 * 109.46834 * 239.99649 * 9 7 5 13 13 C 1.34774 * 120.00038 * 279.05597 * 4 3 2 14 14 O 1.21297 * 120.00216 * 179.97438 * 13 4 3 15 15 C 1.50705 * 120.00355 * 0.02562 * 13 4 3 16 16 H 1.09000 * 109.62875 * 75.55977 * 15 13 4 17 17 C 1.53058 * 109.63538 * 195.96012 * 15 13 4 18 18 C 1.51785 * 110.74513 * 34.78467 * 17 15 13 19 19 C 1.51782 * 113.81297 * 66.80521 * 18 17 15 20 20 C 1.52989 * 110.88508 * 292.99908 * 19 18 17 21 21 N 1.47197 * 108.66238 * 86.46406 * 20 19 18 22 22 C 1.46498 * 119.78729 * 108.04387 * 21 20 19 23 23 C 1.33378 * 120.42599 * 288.04197 * 21 20 19 24 24 O 1.21279 * 119.88941 * 180.28752 * 23 21 20 25 25 H 4.40637 * 5.51417 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47235 * 298.24922 * 3 2 1 27 27 H 1.08998 * 109.46937 * 178.24978 * 3 2 1 28 28 H 0.96996 * 120.00396 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.22336 * 155.11056 * 17 15 13 30 30 H 1.09000 * 109.22284 * 274.45570 * 17 15 13 31 31 H 1.09002 * 108.61869 * 187.92856 * 18 17 15 32 32 H 1.08999 * 108.61698 * 305.82835 * 18 17 15 33 33 H 1.09003 * 109.19163 * 53.35989 * 19 18 17 34 34 H 1.08998 * 109.19617 * 172.67902 * 19 18 17 35 35 H 1.08992 * 109.60560 * 206.21829 * 20 19 18 36 36 H 1.08999 * 109.60330 * 326.71330 * 20 19 18 37 37 H 1.08997 * 109.47023 * 89.99387 * 22 21 20 38 38 H 1.09001 * 109.47127 * 209.99869 * 22 21 20 39 39 H 1.08999 * 109.46742 * 329.99894 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.7260 -1.1745 5 6 3.5391 -0.0362 -2.2881 6 1 4.3457 -0.4178 -2.8965 7 6 2.9151 1.1571 -2.6308 8 7 2.0005 1.6712 -1.8395 9 14 3.3762 2.0304 -4.2164 10 1 4.4243 1.2518 -4.9237 11 1 2.1765 2.1481 -5.0837 12 1 3.8946 3.3860 -3.9021 13 6 3.1867 -2.0727 -1.1602 14 8 3.5909 -2.6743 -2.1328 15 6 2.7417 -2.8311 0.0637 16 1 1.6530 -2.8339 0.1169 17 6 3.2569 -4.2706 -0.0077 18 6 4.6203 -4.3213 -0.6729 19 6 5.7204 -3.6545 0.1326 20 6 5.4946 -2.1437 0.2180 21 7 4.6093 -1.8637 1.3602 22 6 5.1544 -1.2368 2.5669 23 6 3.3141 -2.1769 1.3036 24 8 2.5924 -1.9371 2.2483 25 1 -1.0498 0.0000 -0.0003 26 1 3.0096 -0.4856 0.9053 27 1 3.0089 1.0280 -0.0314 28 1 1.5646 2.5040 -2.0789 29 1 3.3350 -4.6743 1.0018 30 1 2.5547 -4.8750 -0.5819 31 1 4.8905 -5.3650 -0.8337 32 1 4.5532 -3.8271 -1.6421 33 1 5.7313 -4.0727 1.1391 34 1 6.6811 -3.8461 -0.3454 35 1 6.4496 -1.6389 0.3631 36 1 5.0277 -1.7912 -0.7016 37 1 5.0821 -0.1529 2.4775 38 1 4.5871 -1.5684 3.4365 39 1 6.1996 -1.5227 2.6843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822679579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:21 Heat of formation + Delta-G solvation = 42.634179 kcal Electronic energy + Delta-G solvation = -23905.358745 eV Core-core repulsion = 20624.163249 eV Total energy + Delta-G solvation = -3281.195496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19554 -38.22890 -36.41395 -35.27273 -33.77500 -32.21115 -31.32548 -30.77605 -28.13552 -26.52079 -25.73051 -24.34075 -23.43006 -20.85528 -19.60157 -18.56553 -17.79575 -17.36869 -16.65605 -16.39093 -15.60697 -14.96825 -14.57764 -14.45549 -14.07855 -13.62165 -13.56247 -13.17598 -13.11945 -12.68060 -12.44063 -12.29634 -12.19200 -11.61416 -11.55610 -11.37005 -11.25328 -11.17332 -10.69670 -10.44516 -10.39761 -10.36923 -10.04163 -9.51289 -9.22924 -9.15486 -8.74087 -8.39215 -8.11460 -7.71232 -6.37464 -4.09292 2.97859 3.09702 3.20865 3.25753 3.30579 3.56705 3.82484 4.11482 4.18899 4.67774 4.85592 5.01100 5.15978 5.18715 5.36335 5.43748 5.50907 5.55954 5.68897 5.71220 5.76363 5.95496 5.98824 6.05136 6.13834 6.30814 6.38873 6.41468 6.50790 6.53987 6.77226 6.84682 7.10754 7.26300 7.45418 7.65164 8.01067 8.32253 8.49819 8.89676 9.01833 9.19895 9.74199 10.61947 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.008315 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.193153 B = 3366.686633 C = 3823.453387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.105 4.105 3 C 0.210 3.790 4 N -0.433 5.433 5 C -0.320 4.320 6 H 0.101 0.899 7 C 0.040 3.960 8 N -0.864 5.864 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.466 3.534 14 O -0.557 6.557 15 C -0.128 4.128 16 H 0.117 0.883 17 C -0.082 4.082 18 C -0.188 4.188 19 C -0.126 4.126 20 C 0.087 3.913 21 N -0.611 5.611 22 C 0.083 3.917 23 C 0.539 3.461 24 O -0.553 6.553 25 H 0.199 0.801 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.270 0.730 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.151 0.849 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -5.064 5.455 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.106 4.106 3 C 0.087 3.913 4 N -0.150 5.150 5 C -0.447 4.447 6 H 0.119 0.881 7 C -0.166 4.166 8 N -0.500 5.500 9 Si 0.752 3.248 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.256 3.744 14 O -0.443 6.443 15 C -0.152 4.152 16 H 0.135 0.865 17 C -0.120 4.120 18 C -0.224 4.224 19 C -0.165 4.165 20 C -0.036 4.036 21 N -0.344 5.344 22 C -0.060 4.060 23 C 0.329 3.671 24 O -0.433 6.433 25 H 0.216 0.784 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.582 -5.007 5.477 9.286 hybrid contribution -0.265 0.671 -0.604 0.940 sum 5.318 -4.336 4.873 8.416 Atomic orbital electron populations 1.24231 0.95362 1.04827 1.04087 1.23026 0.94243 0.96631 0.96707 1.18884 0.84730 1.00032 0.87636 1.43727 1.54723 1.03101 1.13429 1.19585 1.17423 1.04300 1.03431 0.88144 1.25510 0.94880 0.97741 0.98434 1.69936 1.24564 1.19788 1.35745 0.85882 0.78589 0.78714 0.81608 1.19102 1.20631 1.20773 1.19534 0.83742 0.82803 0.88348 1.90101 1.51503 1.66024 1.36721 1.21849 1.03006 0.97467 0.92896 0.86541 1.20921 0.98129 0.92595 1.00349 1.22313 0.92413 1.01168 1.06477 1.21660 0.99453 0.95086 1.00261 1.22370 0.94491 0.96247 0.90479 1.47766 1.08833 1.60888 1.16917 1.21653 0.98679 0.97877 0.87766 1.19820 0.81759 0.76819 0.88692 1.90723 1.58509 1.55317 1.38724 0.78389 0.90479 0.86855 0.91917 0.92702 0.90907 0.93327 0.83253 0.92799 0.91283 0.90179 0.87312 0.92564 0.90709 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.98 19.25 29.55 0.57 -5.41 16 2 C -0.10 -2.53 11.09 -37.12 -0.41 -2.94 16 3 C 0.21 4.92 4.67 -6.83 -0.03 4.89 16 4 N -0.43 -10.45 2.03 -117.93 -0.24 -10.69 16 5 C -0.32 -8.25 8.99 -14.93 -0.13 -8.38 16 6 H 0.10 2.62 7.60 -52.49 -0.40 2.22 16 7 C 0.04 1.01 5.32 -17.47 -0.09 0.91 16 8 N -0.86 -22.44 9.13 55.50 0.51 -21.93 16 9 Si 0.93 20.02 29.56 -169.99 -5.02 15.00 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.47 10.55 3.84 -10.98 -0.04 10.51 16 14 O -0.56 -13.38 12.27 5.54 0.07 -13.31 16 15 C -0.13 -2.54 2.41 -92.53 -0.22 -2.76 16 16 H 0.12 2.40 8.06 -51.93 -0.42 1.99 16 17 C -0.08 -1.38 5.30 -27.32 -0.14 -1.52 16 18 C -0.19 -3.04 5.15 -27.97 -0.14 -3.19 16 19 C -0.13 -1.82 5.73 -27.35 -0.16 -1.97 16 20 C 0.09 1.38 5.80 -3.67 -0.02 1.36 16 21 N -0.61 -10.22 2.34 -183.95 -0.43 -10.65 16 22 C 0.08 1.13 10.33 59.85 0.62 1.74 16 23 C 0.54 10.49 3.17 -11.25 -0.04 10.45 16 24 O -0.55 -11.96 15.90 5.56 0.09 -11.87 16 25 H 0.20 3.64 7.80 -54.10 -0.42 3.22 16 26 H 0.08 1.71 2.88 -56.83 -0.16 1.55 16 27 H 0.11 2.82 6.60 -51.93 -0.34 2.48 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.05 0.86 7.86 -51.93 -0.41 0.45 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.15 2.91 4.03 -57.00 -0.23 2.68 16 33 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 36 H 0.11 2.13 3.75 -51.93 -0.19 1.93 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.05 7.38 -51.93 -0.38 0.66 16 39 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -29.49 304.45 -5.73 -35.21 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.03 Total: 9.97 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.25 Total: 3.69 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.16 Total: -43.28 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.16 Total: -25.18 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.49 -5.73 -35.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822679579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.848 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds