Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47265 * 2 1 4 4 C 1.46903 * 110.99986 * 188.95295 * 3 2 1 5 5 C 1.53001 * 109.47128 * 171.04716 * 4 3 2 6 6 O 1.42900 * 109.46929 * 65.00068 * 5 4 3 7 7 N 1.36599 * 110.99891 * 65.00148 * 3 2 1 8 8 C 1.34776 * 119.99742 * 243.95099 * 7 3 2 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 3 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 3 11 11 C 1.39231 * 120.28205 * 356.86091 * 10 8 7 12 12 C 1.38223 * 120.08933 * 180.28160 * 11 10 8 13 13 C 1.38826 * 120.67901 * 359.69696 * 12 11 10 14 14 C 1.37600 * 120.56842 * 0.02562 * 13 12 11 15 15 C 1.40710 * 119.88150 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32671 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00355 * 145.82438 * 16 15 14 18 18 C 1.40282 * 120.00172 * 325.82292 * 16 15 14 19 19 N 1.30621 * 119.99647 * 340.84532 * 18 16 15 20 20 Si 1.86793 * 120.00137 * 160.84063 * 18 16 15 21 21 H 1.48502 * 109.47257 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47605 * 300.00368 * 20 18 16 23 23 H 1.48508 * 109.47202 * 60.00112 * 20 18 16 24 24 H 1.09003 * 109.47075 * 300.00087 * 1 2 3 25 25 H 1.08998 * 109.47052 * 60.00228 * 1 2 3 26 26 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47075 * 239.99913 * 2 1 3 28 28 H 1.09004 * 109.47252 * 120.00475 * 2 1 3 29 29 H 1.09000 * 109.47136 * 291.04934 * 4 3 2 30 30 H 1.08999 * 109.46723 * 51.04953 * 4 3 2 31 31 H 1.08999 * 109.47202 * 185.00032 * 5 4 3 32 32 H 1.09002 * 109.47314 * 305.00148 * 5 4 3 33 33 H 0.96701 * 113.99614 * 180.02562 * 6 5 4 34 34 H 0.96994 * 120.00097 * 63.95140 * 7 3 2 35 35 H 1.07997 * 119.95301 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.65933 * 179.72192 * 12 11 10 37 37 H 1.08000 * 119.72007 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.05666 * 180.02562 * 14 13 12 39 39 H 0.97005 * 120.00476 * 354.80733 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4725 1.4296 -0.2134 5 6 3.9118 2.8792 -0.4298 6 8 3.6818 3.6298 0.7642 7 7 1.6748 2.0261 1.1558 8 6 0.8413 3.0845 1.1163 9 8 0.3959 3.4684 0.0518 10 6 0.4694 3.7768 2.3637 11 6 0.9233 3.3031 3.5918 12 6 0.5675 3.9519 4.7592 13 6 -0.2376 5.0823 4.7243 14 6 -0.6969 5.5775 3.5254 15 6 -0.3501 4.9351 2.3225 16 6 -0.8156 5.4337 1.0898 17 1 -0.1962 5.3585 0.2084 18 6 -2.0836 6.0280 1.0074 19 7 -2.9739 5.7985 1.9352 20 14 -2.4989 7.1474 -0.4292 21 1 -3.8904 7.6449 -0.2830 22 1 -1.5613 8.2988 -0.4467 23 1 -2.3749 6.3888 -1.6999 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9808 1.0225 0.6606 30 1 3.7290 0.8373 -1.0917 31 1 4.9733 2.9042 -0.6759 32 1 3.3386 3.3142 -1.2486 33 1 3.9374 4.5602 0.6992 34 1 2.0297 1.7197 2.0049 35 1 1.5508 2.4251 3.6325 36 1 0.9197 3.5758 5.7083 37 1 -0.5059 5.5774 5.6459 38 1 -1.3225 6.4578 3.5078 39 1 -2.7861 5.1594 2.6403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823829011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = -30.892660 kcal Electronic energy + Delta-G solvation = -22599.234274 eV Core-core repulsion = 19314.850415 eV Total energy + Delta-G solvation = -3284.383859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.38862 -37.76701 -36.35589 -35.65949 -33.88443 -31.83088 -31.02457 -29.73082 -29.19821 -26.92135 -25.08045 -22.78693 -22.04258 -21.40435 -20.63132 -19.43873 -17.99516 -17.26220 -16.52732 -16.21585 -15.78282 -14.68936 -14.27066 -14.11641 -14.05248 -13.91537 -13.45412 -13.25802 -12.99654 -12.57690 -12.37425 -12.16377 -11.98374 -11.69507 -11.56008 -11.06620 -10.94848 -10.91999 -10.80785 -10.64156 -10.31498 -10.06495 -9.74022 -9.51949 -8.99678 -8.51369 -8.22594 -8.21427 -7.68618 -7.50664 -7.04650 -4.36093 2.38399 2.81793 3.25236 3.36419 3.39924 3.45766 4.11089 4.29233 4.49157 4.61231 4.77658 5.23850 5.25728 5.32590 5.43676 5.54737 5.59158 5.63752 5.76156 5.92977 5.96783 6.02454 6.12324 6.22989 6.26232 6.55041 6.57410 6.80946 7.05358 7.08403 7.36604 7.59136 7.69199 7.80637 7.92957 7.95643 8.12506 8.22236 8.36536 8.54629 8.84039 8.96671 9.78636 10.13467 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.006875 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.869754 B = 4071.706708 C = 4693.235741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.288 5.288 4 C 0.038 3.962 5 C 0.084 3.916 6 O -0.557 6.557 7 N -0.578 5.578 8 C 0.594 3.406 9 O -0.521 6.521 10 C -0.250 4.250 11 C -0.042 4.042 12 C -0.262 4.262 13 C -0.076 4.076 14 C -0.204 4.204 15 C 0.123 3.877 16 C -0.468 4.468 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.798 5.798 20 Si 1.069 2.931 21 H -0.276 1.276 22 H -0.275 1.275 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.375 0.625 34 H 0.370 0.630 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 -6.983 -2.554 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 N -0.106 5.106 4 C -0.090 4.090 5 C 0.006 3.994 6 O -0.361 6.361 7 N -0.327 5.327 8 C 0.388 3.612 9 O -0.396 6.396 10 C -0.257 4.257 11 C -0.061 4.061 12 C -0.281 4.281 13 C -0.095 4.095 14 C -0.223 4.223 15 C 0.118 3.882 16 C -0.495 4.495 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.421 5.421 20 Si 0.893 3.107 21 H -0.201 1.201 22 H -0.201 1.201 23 H -0.198 1.198 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.221 0.779 34 H 0.208 0.792 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.712 -6.059 -4.105 10.632 hybrid contribution 2.229 -1.356 1.674 3.100 sum 9.941 -7.415 -2.431 12.638 Atomic orbital electron populations 1.21663 0.94037 1.00638 1.03727 1.22566 0.97502 0.88842 1.00365 1.62809 1.11429 1.13795 1.22525 1.22660 0.88731 0.96565 1.01039 1.22031 0.97259 0.91674 0.88445 1.86586 1.88469 1.25264 1.35779 1.45318 1.51548 1.33303 1.02519 1.17978 0.76453 0.77370 0.89405 1.90634 1.53129 1.63987 1.31806 1.19378 1.14758 1.00822 0.90692 1.20699 0.96024 0.96611 0.92762 1.20216 1.09711 1.02012 0.96189 1.20712 0.96612 0.95726 0.96483 1.21225 1.06915 1.01719 0.92431 1.17469 0.89547 0.88165 0.93004 1.21144 1.02388 1.28681 0.97243 0.87687 1.27216 0.93046 0.97056 1.01673 1.70379 1.35478 1.25916 1.10372 0.83574 0.76786 0.75878 0.74465 1.20072 1.20088 1.19822 0.92302 0.91523 0.92820 0.90358 0.94942 0.94064 0.89067 0.94180 0.92682 0.77897 0.79222 0.89498 0.89155 0.89074 0.87650 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.98 37.16 0.37 -1.83 16 2 C 0.04 0.48 5.90 -3.83 -0.02 0.46 16 3 N -0.29 -4.79 4.28 -113.78 -0.49 -5.28 16 4 C 0.04 0.51 5.71 -3.82 -0.02 0.49 16 5 C 0.08 1.17 7.35 37.16 0.27 1.44 16 6 O -0.56 -9.01 11.29 -35.23 -0.40 -9.41 16 7 N -0.58 -10.90 2.63 30.44 0.08 -10.82 16 8 C 0.59 14.01 6.71 -12.52 -0.08 13.93 16 9 O -0.52 -14.06 13.88 5.27 0.07 -13.98 16 10 C -0.25 -6.17 5.92 -104.37 -0.62 -6.79 16 11 C -0.04 -0.91 9.53 -39.22 -0.37 -1.29 16 12 C -0.26 -5.64 10.03 -39.37 -0.39 -6.03 16 13 C -0.08 -1.72 10.01 -39.60 -0.40 -2.12 16 14 C -0.20 -5.14 7.86 -38.88 -0.31 -5.45 16 15 C 0.12 3.29 5.17 -106.54 -0.55 2.74 16 16 C -0.47 -12.95 7.66 -37.81 -0.29 -13.24 16 17 H 0.11 3.05 5.92 -52.49 -0.31 2.74 16 18 C 0.03 0.82 5.04 -17.30 -0.09 0.74 16 19 N -0.80 -21.69 12.57 55.56 0.70 -20.99 16 20 Si 1.07 22.93 29.98 -169.99 -5.10 17.84 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.89 7.97 -51.93 -0.41 0.48 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.95 7.97 -51.93 -0.41 0.54 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.37 4.97 9.12 45.56 0.42 5.38 16 34 H 0.37 6.46 6.87 -185.16 -1.27 5.19 16 35 H 0.09 1.63 6.41 -52.49 -0.34 1.29 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.11 2.72 6.93 -52.49 -0.36 2.35 16 39 H 0.30 8.28 6.55 -40.82 -0.27 8.02 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -31.59 323.09 -8.29 -39.88 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.53 Total: 14.86 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.50 Total: -16.96 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.29 Total: -37.09 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.32 Total: -23.40 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.10 Total: 17.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.59 -8.29 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823829011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.992 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds