Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47265 * 2 1 4 4 C 1.46903 * 110.99986 * 188.95295 * 3 2 1 5 5 C 1.53001 * 109.47128 * 171.04716 * 4 3 2 6 6 O 1.42900 * 109.46929 * 65.00068 * 5 4 3 7 7 N 1.36599 * 110.99891 * 65.00148 * 3 2 1 8 8 C 1.34776 * 119.99742 * 243.95099 * 7 3 2 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 3 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 3 11 11 C 1.39231 * 120.28205 * 356.86091 * 10 8 7 12 12 C 1.38223 * 120.08933 * 180.28160 * 11 10 8 13 13 C 1.38826 * 120.67901 * 359.69696 * 12 11 10 14 14 C 1.37600 * 120.56842 * 0.02562 * 13 12 11 15 15 C 1.40710 * 119.88150 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32671 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00355 * 145.82438 * 16 15 14 18 18 C 1.40282 * 120.00172 * 325.82292 * 16 15 14 19 19 N 1.30621 * 119.99647 * 340.84532 * 18 16 15 20 20 Si 1.86793 * 120.00137 * 160.84063 * 18 16 15 21 21 H 1.48502 * 109.47257 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47605 * 300.00368 * 20 18 16 23 23 H 1.48508 * 109.47202 * 60.00112 * 20 18 16 24 24 H 1.09003 * 109.47075 * 300.00087 * 1 2 3 25 25 H 1.08998 * 109.47052 * 60.00228 * 1 2 3 26 26 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47075 * 239.99913 * 2 1 3 28 28 H 1.09004 * 109.47252 * 120.00475 * 2 1 3 29 29 H 1.09000 * 109.47136 * 291.04934 * 4 3 2 30 30 H 1.08999 * 109.46723 * 51.04953 * 4 3 2 31 31 H 1.08999 * 109.47202 * 185.00032 * 5 4 3 32 32 H 1.09002 * 109.47314 * 305.00148 * 5 4 3 33 33 H 0.96701 * 113.99614 * 180.02562 * 6 5 4 34 34 H 0.96994 * 120.00097 * 63.95140 * 7 3 2 35 35 H 1.07997 * 119.95301 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.65933 * 179.72192 * 12 11 10 37 37 H 1.08000 * 119.72007 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.05666 * 180.02562 * 14 13 12 39 39 H 0.97005 * 120.00476 * 354.80733 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4725 1.4296 -0.2134 5 6 3.9118 2.8792 -0.4298 6 8 3.6818 3.6298 0.7642 7 7 1.6748 2.0261 1.1558 8 6 0.8413 3.0845 1.1163 9 8 0.3959 3.4684 0.0518 10 6 0.4694 3.7768 2.3637 11 6 0.9233 3.3031 3.5918 12 6 0.5675 3.9519 4.7592 13 6 -0.2376 5.0823 4.7243 14 6 -0.6969 5.5775 3.5254 15 6 -0.3501 4.9351 2.3225 16 6 -0.8156 5.4337 1.0898 17 1 -0.1962 5.3585 0.2084 18 6 -2.0836 6.0280 1.0074 19 7 -2.9739 5.7985 1.9352 20 14 -2.4989 7.1474 -0.4292 21 1 -3.8904 7.6449 -0.2830 22 1 -1.5613 8.2988 -0.4467 23 1 -2.3749 6.3888 -1.6999 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9808 1.0225 0.6606 30 1 3.7290 0.8373 -1.0917 31 1 4.9733 2.9042 -0.6759 32 1 3.3386 3.3142 -1.2486 33 1 3.9374 4.5602 0.6992 34 1 2.0297 1.7197 2.0049 35 1 1.5508 2.4251 3.6325 36 1 0.9197 3.5758 5.7083 37 1 -0.5059 5.5774 5.6459 38 1 -1.3225 6.4578 3.5078 39 1 -2.7861 5.1594 2.6403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823829011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = -53.209378 kcal Electronic energy + Delta-G solvation = -22600.202000 eV Core-core repulsion = 19314.850415 eV Total energy + Delta-G solvation = -3285.351584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96838 -39.41664 -37.92568 -37.06416 -35.78847 -33.37897 -32.25349 -31.52706 -30.99339 -28.26481 -26.96522 -24.43932 -23.17281 -23.01612 -22.30608 -21.14209 -19.88538 -18.45187 -18.14767 -17.63514 -17.08777 -16.50050 -15.94813 -15.85331 -15.47710 -15.26197 -15.13265 -14.78341 -14.48735 -14.27944 -13.98841 -13.65816 -13.38353 -13.18932 -12.88769 -12.76315 -12.65950 -12.43162 -12.12587 -12.04329 -11.98912 -11.90474 -11.40131 -10.92662 -10.90087 -10.18447 -9.83625 -9.62879 -9.54057 -9.43211 -9.03540 -6.39138 0.50982 0.94733 1.47850 1.63966 1.77957 2.02325 2.33902 2.46762 2.84214 3.38510 3.47845 3.65961 4.11996 4.20267 4.22902 4.24941 4.35686 4.38164 4.49636 4.51078 4.58446 4.75102 4.80193 4.85196 4.90957 4.92848 5.00606 5.19543 5.28691 5.47631 5.70197 5.76347 5.92482 5.95263 6.00247 6.24030 6.38348 6.64612 6.80118 6.85218 6.94048 7.04376 8.06793 8.11646 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.006875 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.869754 B = 4071.706708 C = 4693.235741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 N -0.320 5.320 4 C 0.038 3.962 5 C 0.080 3.920 6 O -0.582 6.582 7 N -0.559 5.559 8 C 0.595 3.405 9 O -0.565 6.565 10 C -0.266 4.266 11 C -0.042 4.042 12 C -0.246 4.246 13 C -0.074 4.074 14 C -0.226 4.226 15 C 0.099 3.901 16 C -0.507 4.507 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.821 5.821 20 Si 1.114 2.886 21 H -0.265 1.265 22 H -0.259 1.259 23 H -0.273 1.273 24 H 0.023 0.977 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.382 0.618 34 H 0.378 0.622 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.935 -8.936 -1.627 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 N -0.138 5.138 4 C -0.089 4.089 5 C 0.002 3.998 6 O -0.388 6.388 7 N -0.305 5.305 8 C 0.388 3.612 9 O -0.443 6.443 10 C -0.272 4.272 11 C -0.061 4.061 12 C -0.265 4.265 13 C -0.092 4.092 14 C -0.246 4.246 15 C 0.095 3.905 16 C -0.535 4.535 17 H 0.098 0.902 18 C -0.218 4.218 19 N -0.446 5.446 20 Si 0.932 3.068 21 H -0.190 1.190 22 H -0.183 1.183 23 H -0.198 1.198 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.230 0.770 34 H 0.218 0.782 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.961 -8.048 -3.139 13.185 hybrid contribution 1.750 -0.959 1.519 2.507 sum 11.711 -9.007 -1.621 14.862 Atomic orbital electron populations 1.21652 0.95845 1.01698 1.00627 1.22640 0.95887 0.87549 1.02918 1.62794 1.14047 1.15489 1.21473 1.22823 0.86372 0.96569 1.03130 1.22205 0.99040 0.91725 0.86827 1.86528 1.88967 1.26198 1.37074 1.44821 1.49910 1.31895 1.03916 1.17879 0.76738 0.78173 0.88403 1.90612 1.55048 1.65557 1.33118 1.19775 1.14227 1.00513 0.92707 1.21067 0.95800 0.97542 0.91683 1.20753 1.07447 1.00541 0.97787 1.21106 0.95594 0.95947 0.96576 1.21189 1.08094 1.01953 0.93344 1.17839 0.90203 0.89038 0.93428 1.21044 1.03313 1.32171 0.97010 0.90160 1.28420 0.92559 0.97582 1.03282 1.70492 1.35674 1.27104 1.11314 0.83039 0.77349 0.74826 0.71562 1.18965 1.18322 1.19843 0.95747 0.94214 0.89675 0.87045 0.92842 0.92638 0.85616 0.90514 0.95423 0.76994 0.78207 0.85868 0.84997 0.85936 0.89328 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.98 71.98 0.72 -3.49 16 2 C 0.04 0.91 5.90 86.30 0.51 1.42 16 3 N -0.32 -10.06 4.28 -513.88 -2.20 -12.26 16 4 C 0.04 0.89 5.71 86.30 0.49 1.39 16 5 C 0.08 2.08 7.35 71.98 0.53 2.61 16 6 O -0.58 -18.35 11.29 -148.98 -1.68 -20.03 16 7 N -0.56 -20.48 2.63 -175.88 -0.46 -20.94 16 8 C 0.60 28.62 6.71 86.67 0.58 29.20 16 9 O -0.56 -32.03 13.88 -4.06 -0.06 -32.09 16 10 C -0.27 -13.27 5.92 -19.70 -0.12 -13.38 16 11 C -0.04 -1.74 9.53 22.50 0.21 -1.53 16 12 C -0.25 -9.76 10.03 22.41 0.22 -9.53 16 13 C -0.07 -3.20 10.01 22.26 0.22 -2.98 16 14 C -0.23 -11.72 7.86 22.72 0.18 -11.54 16 15 C 0.10 5.52 5.17 -21.11 -0.11 5.41 16 16 C -0.51 -29.87 7.66 23.42 0.18 -29.69 16 17 H 0.08 5.02 5.92 -2.91 -0.02 5.00 16 18 C 0.00 -0.20 5.04 85.37 0.43 0.23 16 19 N -0.82 -46.98 12.57 21.88 0.28 -46.70 16 20 Si 1.11 48.37 29.98 68.60 2.06 50.43 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H 0.02 0.87 7.56 -2.39 -0.02 0.85 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.11 2.06 7.97 -2.39 -0.02 2.04 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.13 2.07 7.97 -2.39 -0.02 2.05 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.38 10.18 9.12 -74.06 -0.68 9.51 16 34 H 0.38 12.30 6.87 -215.50 -1.48 10.82 16 35 H 0.12 4.14 6.41 -2.91 -0.02 4.12 16 36 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.09 4.80 6.93 -2.91 -0.02 4.78 16 39 H 0.28 16.60 6.55 -92.70 -0.61 16.00 16 Total: -1.00 -73.82 323.09 1.07 -72.75 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.92 Total: 40.72 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.06 Total: -31.88 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -2.39 Total: -79.90 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.74 Total: -52.12 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.06 Total: 50.43 kcal Total: -73.82 1.07 -72.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823829011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.544 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds