Wall clock time and date at job start Tue Mar 31 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46945 * 2 1 4 4 C 1.46904 * 110.99863 * 188.95558 * 3 2 1 5 5 C 1.53002 * 109.46879 * 171.04535 * 4 3 2 6 6 O 1.42893 * 109.47489 * 64.99785 * 5 4 3 7 7 N 1.36594 * 111.00281 * 64.99951 * 3 2 1 8 8 C 1.34777 * 120.00108 * 243.95797 * 7 3 2 9 9 O 1.21542 * 119.99946 * 359.97438 * 8 7 3 10 10 C 1.47883 * 119.99863 * 179.97438 * 8 7 3 11 11 C 1.39921 * 120.02945 * 359.97438 * 10 8 7 12 12 C 1.38323 * 120.36046 * 180.02562 * 11 10 8 13 13 C 1.37749 * 120.41447 * 359.97438 * 12 11 10 14 14 C 1.40751 * 120.03994 * 359.97438 * 13 12 11 15 15 C 1.41435 * 120.17888 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99792 * 24.39006 * 15 14 13 17 17 C 1.39937 * 120.00029 * 204.38102 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.86125 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.85585 * 17 15 14 20 20 H 1.48503 * 109.46909 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46871 * 120.00054 * 19 17 15 22 22 H 1.48498 * 109.47266 * 240.00165 * 19 17 15 23 23 C 1.38999 * 120.02296 * 179.97438 * 10 8 7 24 24 H 1.09002 * 109.47506 * 300.00189 * 1 2 3 25 25 H 1.09000 * 109.47471 * 60.00387 * 1 2 3 26 26 H 1.09003 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47329 * 240.00266 * 2 1 3 28 28 H 1.09000 * 109.47471 * 119.99613 * 2 1 3 29 29 H 1.08994 * 109.46908 * 291.04436 * 4 3 2 30 30 H 1.09000 * 109.47093 * 51.04767 * 4 3 2 31 31 H 1.09004 * 109.46821 * 185.00121 * 5 4 3 32 32 H 1.08997 * 109.46798 * 304.99739 * 5 4 3 33 33 H 0.96692 * 114.00563 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00284 * 63.95043 * 7 3 2 35 35 H 1.08001 * 119.81453 * 359.97438 * 11 10 8 36 36 H 1.08002 * 119.79194 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.98284 * 179.97438 * 13 12 11 38 38 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.20633 * 359.70283 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4724 1.4298 -0.2135 5 6 3.9115 2.8794 -0.4299 6 8 3.6816 3.6302 0.7639 7 7 1.6747 2.0263 1.1557 8 6 0.8410 3.0845 1.1162 9 8 0.3966 3.4687 0.0522 10 6 0.4672 3.7784 2.3676 11 6 0.9781 3.3363 3.5929 12 6 0.6326 3.9798 4.7675 13 6 -0.2178 5.0633 4.7449 14 6 -0.7409 5.5231 3.5218 15 6 -1.6139 6.6356 3.4952 16 1 -1.5840 7.3646 4.2915 17 6 -2.5161 6.7918 2.4370 18 7 -2.8087 5.7725 1.6708 19 14 -3.3031 8.4558 2.1185 20 1 -2.8093 9.4364 3.1184 21 1 -2.9461 8.9190 0.7535 22 1 -4.7789 8.3349 2.2301 23 6 -0.3921 4.8702 2.3274 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9807 1.0228 0.6605 30 1 3.7289 0.8375 -1.0918 31 1 4.9731 2.9045 -0.6761 32 1 3.3383 3.3143 -1.2487 33 1 3.9378 4.5603 0.6992 34 1 2.0296 1.7199 2.0049 35 1 1.6453 2.4875 3.6216 36 1 1.0326 3.6311 5.7081 37 1 -0.4833 5.5603 5.6663 38 1 -3.4337 5.8809 0.9372 39 1 -0.7851 5.2179 1.3835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823846710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:49 Heat of formation + Delta-G solvation = -30.840782 kcal Electronic energy + Delta-G solvation = -22132.872156 eV Core-core repulsion = 18848.490547 eV Total energy + Delta-G solvation = -3284.381609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.56116 -37.67054 -36.52947 -35.86491 -33.67883 -32.00628 -31.12624 -29.83353 -29.32373 -27.04343 -25.21164 -23.03816 -22.12708 -21.25572 -20.71225 -19.48184 -17.69592 -17.33223 -16.69054 -16.08807 -15.73477 -15.06621 -14.63628 -14.19780 -14.15187 -13.85795 -13.32151 -13.21191 -13.07104 -12.68907 -12.45331 -12.38909 -12.08787 -11.67798 -11.57880 -11.11865 -11.05630 -11.01291 -10.97103 -10.66727 -10.42614 -9.89740 -9.83333 -9.61390 -9.15312 -8.83564 -8.55524 -8.44410 -7.53094 -7.43659 -6.73466 -4.34419 2.37208 2.87601 3.11811 3.16691 3.20448 3.22571 3.96497 4.10097 4.40216 4.50068 4.75166 5.15409 5.17832 5.23510 5.36237 5.46283 5.56156 5.67282 5.70517 5.83441 5.91183 5.95159 6.16197 6.17107 6.37507 6.47783 6.78653 6.93134 7.05831 7.10524 7.28618 7.46981 7.78884 7.84751 7.85200 7.93008 8.02162 8.21732 8.33060 8.59517 8.87805 8.91740 9.42437 10.21162 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.005115 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.583416 B = 5472.679584 C = 5713.832517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 N -0.293 5.293 4 C 0.038 3.962 5 C 0.083 3.917 6 O -0.558 6.558 7 N -0.568 5.568 8 C 0.593 3.407 9 O -0.531 6.531 10 C -0.116 4.116 11 C -0.213 4.213 12 C -0.100 4.100 13 C -0.214 4.214 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.093 4.093 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.376 0.624 34 H 0.378 0.622 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.283 0.717 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -7.811 -3.246 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 N -0.110 5.110 4 C -0.090 4.090 5 C 0.004 3.996 6 O -0.363 6.363 7 N -0.316 5.316 8 C 0.384 3.616 9 O -0.406 6.406 10 C -0.120 4.120 11 C -0.233 4.233 12 C -0.118 4.118 13 C -0.234 4.234 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.200 1.200 23 C -0.114 4.114 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.223 0.777 34 H 0.217 0.783 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.918 -7.939 -4.400 12.724 hybrid contribution 0.560 0.386 0.626 0.924 sum 9.477 -7.553 -3.774 12.693 Atomic orbital electron populations 1.21684 0.93952 1.00913 1.03697 1.22579 0.97552 0.88502 1.00668 1.62839 1.11841 1.14183 1.22130 1.22675 0.88369 0.96672 1.01316 1.22054 0.97503 0.91623 0.88392 1.86576 1.88424 1.25448 1.35847 1.45173 1.50672 1.32565 1.03156 1.18444 0.76140 0.77612 0.89419 1.90649 1.53646 1.64490 1.31815 1.19434 1.02299 0.99368 0.90942 1.20330 1.07110 1.03375 0.92471 1.20417 0.98672 0.96754 0.95961 1.21073 1.05411 1.00014 0.96851 1.17591 0.90655 0.91779 0.90352 1.19595 1.15691 1.07266 1.06493 0.90172 1.25945 0.95884 0.97924 0.94760 1.69802 1.26258 1.30475 1.14212 0.86271 0.78857 0.82336 0.79341 1.18395 1.19609 1.19982 1.21596 0.95589 0.94645 0.99537 0.92248 0.91533 0.92580 0.90114 0.94630 0.93761 0.88821 0.93930 0.92700 0.77715 0.78293 0.89569 0.89134 0.88779 0.90567 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.98 37.16 0.37 -1.73 16 2 C 0.03 0.45 5.90 -3.82 -0.02 0.42 16 3 N -0.29 -4.58 4.28 -113.78 -0.49 -5.07 16 4 C 0.04 0.47 5.71 -3.82 -0.02 0.44 16 5 C 0.08 1.07 7.35 37.16 0.27 1.34 16 6 O -0.56 -8.50 11.29 -35.23 -0.40 -8.90 16 7 N -0.57 -10.19 2.63 30.54 0.08 -10.11 16 8 C 0.59 13.42 6.76 -12.31 -0.08 13.34 16 9 O -0.53 -13.82 16.66 5.33 0.09 -13.73 16 10 C -0.12 -2.79 5.87 -105.04 -0.62 -3.41 16 11 C -0.21 -4.62 9.55 -38.92 -0.37 -4.99 16 12 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 13 C -0.21 -5.16 9.78 -38.81 -0.38 -5.54 16 14 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 15 C -0.46 -12.27 9.05 -37.73 -0.34 -12.61 16 16 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.78 -21.01 10.95 55.55 0.61 -20.41 16 19 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.09 -2.53 8.23 -38.44 -0.32 -2.84 16 24 H 0.06 1.02 7.56 -51.93 -0.39 0.62 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.89 7.97 -51.93 -0.41 0.48 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.38 4.59 9.12 45.56 0.42 5.01 16 34 H 0.38 6.28 6.85 -185.16 -1.27 5.02 16 35 H 0.09 1.61 6.38 -52.49 -0.33 1.27 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 39 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -31.60 328.38 -8.42 -40.03 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.64 Total: 13.59 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.59 Total: -14.31 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.20 Total: -35.59 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.31 Total: -22.63 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.60 -8.42 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823846710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.185 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds