Wall clock time and date at job start Tue Mar 31 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46945 * 2 1 4 4 C 1.46904 * 110.99863 * 188.95558 * 3 2 1 5 5 C 1.53002 * 109.46879 * 171.04535 * 4 3 2 6 6 O 1.42893 * 109.47489 * 64.99785 * 5 4 3 7 7 N 1.36594 * 111.00281 * 64.99951 * 3 2 1 8 8 C 1.34777 * 120.00108 * 243.95797 * 7 3 2 9 9 O 1.21542 * 119.99946 * 359.97438 * 8 7 3 10 10 C 1.47883 * 119.99863 * 179.97438 * 8 7 3 11 11 C 1.39921 * 120.02945 * 359.97438 * 10 8 7 12 12 C 1.38323 * 120.36046 * 180.02562 * 11 10 8 13 13 C 1.37749 * 120.41447 * 359.97438 * 12 11 10 14 14 C 1.40751 * 120.03994 * 359.97438 * 13 12 11 15 15 C 1.41435 * 120.17888 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99792 * 24.39006 * 15 14 13 17 17 C 1.39937 * 120.00029 * 204.38102 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.86125 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.85585 * 17 15 14 20 20 H 1.48503 * 109.46909 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46871 * 120.00054 * 19 17 15 22 22 H 1.48498 * 109.47266 * 240.00165 * 19 17 15 23 23 C 1.38999 * 120.02296 * 179.97438 * 10 8 7 24 24 H 1.09002 * 109.47506 * 300.00189 * 1 2 3 25 25 H 1.09000 * 109.47471 * 60.00387 * 1 2 3 26 26 H 1.09003 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47329 * 240.00266 * 2 1 3 28 28 H 1.09000 * 109.47471 * 119.99613 * 2 1 3 29 29 H 1.08994 * 109.46908 * 291.04436 * 4 3 2 30 30 H 1.09000 * 109.47093 * 51.04767 * 4 3 2 31 31 H 1.09004 * 109.46821 * 185.00121 * 5 4 3 32 32 H 1.08997 * 109.46798 * 304.99739 * 5 4 3 33 33 H 0.96692 * 114.00563 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00284 * 63.95043 * 7 3 2 35 35 H 1.08001 * 119.81453 * 359.97438 * 11 10 8 36 36 H 1.08002 * 119.79194 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.98284 * 179.97438 * 13 12 11 38 38 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.20633 * 359.70283 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4724 1.4298 -0.2135 5 6 3.9115 2.8794 -0.4299 6 8 3.6816 3.6302 0.7639 7 7 1.6747 2.0263 1.1557 8 6 0.8410 3.0845 1.1162 9 8 0.3966 3.4687 0.0522 10 6 0.4672 3.7784 2.3676 11 6 0.9781 3.3363 3.5929 12 6 0.6326 3.9798 4.7675 13 6 -0.2178 5.0633 4.7449 14 6 -0.7409 5.5231 3.5218 15 6 -1.6139 6.6356 3.4952 16 1 -1.5840 7.3646 4.2915 17 6 -2.5161 6.7918 2.4370 18 7 -2.8087 5.7725 1.6708 19 14 -3.3031 8.4558 2.1185 20 1 -2.8093 9.4364 3.1184 21 1 -2.9461 8.9190 0.7535 22 1 -4.7789 8.3349 2.2301 23 6 -0.3921 4.8702 2.3274 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9807 1.0228 0.6605 30 1 3.7289 0.8375 -1.0918 31 1 4.9731 2.9045 -0.6761 32 1 3.3383 3.3143 -1.2487 33 1 3.9378 4.5603 0.6992 34 1 2.0296 1.7199 2.0049 35 1 1.6453 2.4875 3.6216 36 1 1.0326 3.6311 5.7081 37 1 -0.4833 5.5603 5.6663 38 1 -3.4337 5.8809 0.9372 39 1 -0.7851 5.2179 1.3835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823846710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:49 Heat of formation + Delta-G solvation = -53.294933 kcal Electronic energy + Delta-G solvation = -22133.845841 eV Core-core repulsion = 18848.490547 eV Total energy + Delta-G solvation = -3285.355294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07228 -39.29206 -38.13307 -37.12174 -35.57843 -33.50064 -32.28904 -31.55285 -31.18858 -28.30076 -27.11298 -24.61531 -23.16415 -22.88323 -22.33671 -21.17995 -19.50292 -18.44355 -18.14287 -17.55180 -17.11548 -16.86648 -16.41438 -15.59212 -15.40967 -15.29807 -14.96635 -14.82611 -14.54529 -14.30236 -14.19204 -13.49875 -13.40408 -13.19975 -12.94077 -12.78595 -12.76402 -12.50561 -12.16177 -12.12170 -12.05048 -11.80677 -11.47070 -11.04967 -10.92316 -10.60817 -10.00070 -9.68320 -9.42053 -9.34096 -8.63431 -6.34740 0.49834 1.04270 1.37780 1.48896 1.54239 1.89052 2.20393 2.30546 2.87030 3.33500 3.47243 3.76106 4.05641 4.18835 4.20815 4.28813 4.34201 4.45318 4.50842 4.58519 4.63930 4.75839 4.84130 4.90510 4.93312 5.00529 5.12313 5.23858 5.29101 5.35514 5.56403 5.90385 5.91211 5.97218 6.09287 6.31890 6.42516 6.58002 6.79998 6.86271 6.91534 6.98893 7.82061 8.33338 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.005115 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.583416 B = 5472.679584 C = 5713.832517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.324 5.324 4 C 0.037 3.963 5 C 0.078 3.922 6 O -0.584 6.584 7 N -0.546 5.546 8 C 0.595 3.405 9 O -0.577 6.577 10 C -0.125 4.125 11 C -0.196 4.196 12 C -0.096 4.096 13 C -0.220 4.220 14 C 0.068 3.932 15 C -0.497 4.497 16 H 0.083 0.917 17 C 0.030 3.970 18 N -0.825 5.825 19 Si 0.982 3.018 20 H -0.251 1.251 21 H -0.271 1.271 22 H -0.264 1.264 23 C -0.129 4.129 24 H 0.024 0.976 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.385 0.615 34 H 0.386 0.614 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.286 0.714 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.906 -9.541 -2.406 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 N -0.142 5.142 4 C -0.090 4.090 5 C 0.000 4.000 6 O -0.390 6.390 7 N -0.291 5.291 8 C 0.385 3.615 9 O -0.456 6.456 10 C -0.130 4.130 11 C -0.215 4.215 12 C -0.114 4.114 13 C -0.239 4.239 14 C 0.066 3.934 15 C -0.527 4.527 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.451 5.451 19 Si 0.803 3.197 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.189 1.189 23 C -0.150 4.150 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.232 0.768 34 H 0.227 0.773 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.017 -9.711 -3.522 15.103 hybrid contribution 0.077 0.737 0.390 0.838 sum 11.094 -8.974 -3.132 14.609 Atomic orbital electron populations 1.21683 0.95787 1.01936 1.00713 1.22667 0.95926 0.87190 1.03263 1.62843 1.14486 1.15862 1.20995 1.22852 0.85965 0.96690 1.03448 1.22236 0.99265 0.91697 0.86838 1.86515 1.88917 1.26429 1.37136 1.44719 1.48809 1.30997 1.04611 1.18230 0.76605 0.78480 0.88190 1.90620 1.55690 1.66202 1.33100 1.19720 1.01599 0.98690 0.92951 1.20751 1.05962 1.03535 0.91288 1.20876 0.97304 0.95389 0.97843 1.21368 1.05436 1.00774 0.96360 1.17935 0.91565 0.92554 0.91336 1.19873 1.16890 1.08129 1.07769 0.89860 1.26852 0.96086 1.01557 0.94031 1.69905 1.27362 1.32754 1.15041 0.85163 0.78145 0.77361 0.79072 1.17390 1.19587 1.18886 1.21378 0.98136 0.97029 0.98408 0.95648 0.94061 0.89555 0.86742 0.92518 0.92296 0.85332 0.90359 0.95291 0.76752 0.77291 0.85679 0.84705 0.87445 0.90386 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.98 71.98 0.72 -3.30 16 2 C 0.04 0.82 5.90 86.30 0.51 1.33 16 3 N -0.32 -9.50 4.28 -513.88 -2.20 -11.70 16 4 C 0.04 0.80 5.71 86.30 0.49 1.29 16 5 C 0.08 1.86 7.35 71.98 0.53 2.39 16 6 O -0.58 -17.16 11.29 -148.98 -1.68 -18.84 16 7 N -0.55 -18.92 2.63 -175.58 -0.46 -19.38 16 8 C 0.59 27.48 6.76 86.80 0.59 28.06 16 9 O -0.58 -31.60 16.66 -3.85 -0.06 -31.67 16 10 C -0.13 -6.15 5.87 -20.13 -0.12 -6.26 16 11 C -0.20 -8.10 9.55 22.70 0.22 -7.89 16 12 C -0.10 -3.96 10.01 22.17 0.22 -3.74 16 13 C -0.22 -10.54 9.78 22.77 0.22 -10.31 16 14 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 15 C -0.50 -27.58 9.05 23.47 0.21 -27.37 16 16 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 17 C 0.03 1.57 5.14 85.25 0.44 2.01 16 18 N -0.82 -47.02 10.95 21.82 0.24 -46.78 16 19 Si 0.98 40.33 29.60 68.60 2.03 42.36 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 C -0.13 -7.34 8.23 23.01 0.19 -7.15 16 24 H 0.02 0.85 7.56 -2.39 -0.02 0.84 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.11 1.87 7.97 -2.39 -0.02 1.85 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.13 1.85 7.97 -2.39 -0.02 1.83 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.38 9.35 9.12 -74.06 -0.68 8.68 16 34 H 0.39 11.80 6.85 -215.49 -1.48 10.32 16 35 H 0.13 4.17 6.38 -2.91 -0.02 4.15 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 39 H 0.10 6.19 5.74 -2.91 -0.02 6.17 16 Total: -1.00 -74.22 328.38 0.88 -73.34 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -1.08 Total: 39.94 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 4.10 Total: -27.26 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -2.42 Total: -77.87 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -1.75 Total: -50.51 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -74.22 0.88 -73.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823846710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.040 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds