Wall clock time and date at job start Tue Mar 31 2020 00:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47155 * 2 1 4 4 C 1.46903 * 111.00220 * 188.94988 * 3 2 1 5 5 C 1.52992 * 109.47092 * 171.04614 * 4 3 2 6 6 O 1.42905 * 109.47031 * 65.00655 * 5 4 3 7 7 N 1.36600 * 110.99511 * 65.00035 * 3 2 1 8 8 C 1.34776 * 120.00050 * 243.95044 * 7 3 2 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 3 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 3 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 H 1.08993 * 109.47570 * 299.99760 * 1 2 3 25 25 H 1.09002 * 109.47059 * 59.99875 * 1 2 3 26 26 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47182 * 240.00415 * 2 1 3 28 28 H 1.09001 * 109.47182 * 120.00667 * 2 1 3 29 29 H 1.08999 * 109.47254 * 291.05695 * 4 3 2 30 30 H 1.09004 * 109.46313 * 51.05284 * 4 3 2 31 31 H 1.09000 * 109.47185 * 185.00081 * 5 4 3 32 32 H 1.09002 * 109.47666 * 305.00563 * 5 4 3 33 33 H 0.96693 * 113.99926 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00454 * 63.95609 * 7 3 2 35 35 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 36 36 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 37 37 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 39 39 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8792 -0.4297 6 8 3.6816 3.6299 0.7643 7 7 1.6747 2.0261 1.1558 8 6 0.8411 3.0844 1.1164 9 8 0.3959 3.4682 0.0522 10 6 0.4687 3.7777 2.3657 11 6 0.9868 3.3371 3.5895 12 6 0.6417 3.9707 4.7460 13 6 -0.2291 5.0775 4.7073 14 6 -0.5844 5.7407 5.9011 15 1 -0.8854 6.7775 5.8739 16 6 -0.5465 5.0534 7.1228 17 7 -0.5112 3.7476 7.1369 18 14 -0.5467 6.0051 8.7302 19 1 -1.9462 6.2197 9.1782 20 1 0.1907 5.2333 9.7626 21 1 0.1151 7.3190 8.5276 22 6 -0.7438 5.5205 3.4729 23 6 -0.3977 4.8767 2.3222 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9807 1.0226 0.6606 30 1 3.7290 0.8374 -1.0917 31 1 4.9732 2.9044 -0.6758 32 1 3.3384 3.3143 -1.2485 33 1 3.9379 4.5600 0.6996 34 1 2.0296 1.7197 2.0050 35 1 1.6582 2.4915 3.6175 36 1 1.0387 3.6275 5.6900 37 1 -0.4846 3.2721 7.9820 38 1 -1.4113 6.3687 3.4383 39 1 -0.7920 5.2152 1.3755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823869219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:54 Heat of formation + Delta-G solvation = -34.817719 kcal Electronic energy + Delta-G solvation = -21870.179297 eV Core-core repulsion = 18585.625235 eV Total energy + Delta-G solvation = -3284.554062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.49311 -37.69936 -36.56117 -35.85067 -33.76719 -32.00733 -31.11717 -29.88544 -29.35377 -27.18502 -25.60177 -22.55630 -22.11455 -21.26464 -20.67384 -19.55257 -17.45534 -17.34180 -16.92346 -16.33257 -15.88105 -15.36762 -14.31852 -14.15948 -14.02150 -13.87980 -13.30211 -13.16760 -13.06967 -12.72622 -12.46637 -12.12571 -12.01401 -11.85879 -11.66114 -11.28951 -11.20273 -11.04196 -10.97993 -10.91322 -10.55949 -9.96995 -9.82150 -9.49255 -9.28653 -8.79097 -8.51672 -8.39810 -7.63231 -7.44773 -6.95754 -4.52857 2.36716 2.95859 2.97971 3.04477 3.10966 3.29189 3.79189 4.06448 4.41850 4.53182 4.70832 5.17458 5.19258 5.26019 5.37327 5.48131 5.57117 5.65630 5.69776 5.86108 5.94148 6.09934 6.15080 6.19289 6.40102 6.45711 6.84364 6.89821 6.95169 7.10558 7.21163 7.51273 7.72639 7.86377 7.87350 7.93720 8.01614 8.15564 8.41475 8.47825 8.70992 8.83307 9.52490 9.96620 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.004241 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.295171 B = 6600.316399 C = 6720.785686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 N -0.292 5.292 4 C 0.037 3.963 5 C 0.084 3.916 6 O -0.557 6.557 7 N -0.572 5.572 8 C 0.602 3.398 9 O -0.560 6.560 10 C -0.268 4.268 11 C -0.060 4.060 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.447 4.447 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.777 5.777 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.238 4.238 23 C -0.025 4.025 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.375 0.625 34 H 0.377 0.623 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -5.596 -6.832 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 N -0.109 5.109 4 C -0.091 4.091 5 C 0.005 3.995 6 O -0.361 6.361 7 N -0.319 5.319 8 C 0.397 3.603 9 O -0.439 6.439 10 C -0.274 4.274 11 C -0.079 4.079 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.475 4.475 15 H 0.101 0.899 16 C -0.145 4.145 17 N -0.401 5.401 18 Si 0.735 3.265 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.258 4.258 23 C -0.044 4.044 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.215 0.785 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.798 -5.876 -7.599 11.768 hybrid contribution 0.944 0.017 1.593 1.852 sum 7.741 -5.858 -6.006 11.416 Atomic orbital electron populations 1.21670 0.94065 1.00850 1.03533 1.22576 0.97495 0.88684 1.00640 1.62842 1.11696 1.14034 1.22298 1.22673 0.88544 0.96625 1.01273 1.22039 0.97409 0.91661 0.88364 1.86602 1.88374 1.25346 1.35776 1.45168 1.50990 1.32768 1.02949 1.18203 0.75761 0.77194 0.89155 1.90588 1.55461 1.65632 1.32198 1.18879 1.12719 1.04691 0.91130 1.20452 0.97389 0.97403 0.92663 1.20952 1.01715 1.00202 0.96822 1.17759 0.87288 0.90283 0.92127 1.19795 1.38143 0.98739 0.90871 0.89882 1.26060 0.91966 0.94792 1.01709 1.69746 1.32662 1.08165 1.29477 0.86255 0.79433 0.80794 0.80029 1.19233 1.19901 1.18185 1.20710 1.07279 1.04891 0.92883 1.20337 0.93986 0.93052 0.97026 0.92236 0.91681 0.92642 0.90220 0.94626 0.93781 0.88931 0.94017 0.92801 0.77842 0.78454 0.89670 0.86392 0.90408 0.88506 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.98 37.16 0.37 -1.66 16 2 C 0.03 0.44 5.90 -3.83 -0.02 0.41 16 3 N -0.29 -4.54 4.28 -113.78 -0.49 -5.03 16 4 C 0.04 0.46 5.71 -3.83 -0.02 0.44 16 5 C 0.08 1.08 7.35 37.15 0.27 1.35 16 6 O -0.56 -8.48 11.29 -35.23 -0.40 -8.88 16 7 N -0.57 -10.26 2.63 30.48 0.08 -10.18 16 8 C 0.60 13.15 6.75 -12.42 -0.08 13.07 16 9 O -0.56 -13.75 16.65 5.29 0.09 -13.66 16 10 C -0.27 -6.24 5.89 -104.73 -0.62 -6.85 16 11 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 12 C -0.18 -4.43 8.63 -39.28 -0.34 -4.77 16 13 C 0.13 3.32 5.57 -106.80 -0.59 2.73 16 14 C -0.45 -11.31 9.05 -37.75 -0.34 -11.65 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 16 C 0.08 1.78 5.15 -17.31 -0.09 1.69 16 17 N -0.78 -18.97 10.95 55.56 0.61 -18.37 16 18 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 22 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 23 C -0.02 -0.59 9.52 -39.61 -0.38 -0.97 16 24 H 0.06 1.00 7.56 -51.93 -0.39 0.60 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.89 7.97 -51.93 -0.41 0.48 16 31 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.38 4.53 9.12 45.56 0.42 4.95 16 34 H 0.38 6.46 6.83 -185.15 -1.26 5.19 16 35 H 0.09 1.71 6.37 -52.49 -0.33 1.37 16 36 H 0.12 3.00 6.18 -52.48 -0.32 2.67 16 37 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 38 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -30.22 328.15 -8.43 -38.65 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.64 Total: 14.17 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.60 Total: -14.18 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.20 Total: -33.58 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.31 Total: -22.53 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.22 -8.43 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823869219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.830 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds