Wall clock time and date at job start Tue Mar 31 2020 00:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47155 * 2 1 4 4 C 1.46903 * 111.00220 * 188.94988 * 3 2 1 5 5 C 1.52992 * 109.47092 * 171.04614 * 4 3 2 6 6 O 1.42905 * 109.47031 * 65.00655 * 5 4 3 7 7 N 1.36600 * 110.99511 * 65.00035 * 3 2 1 8 8 C 1.34776 * 120.00050 * 243.95044 * 7 3 2 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 3 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 3 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 H 1.08993 * 109.47570 * 299.99760 * 1 2 3 25 25 H 1.09002 * 109.47059 * 59.99875 * 1 2 3 26 26 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47182 * 240.00415 * 2 1 3 28 28 H 1.09001 * 109.47182 * 120.00667 * 2 1 3 29 29 H 1.08999 * 109.47254 * 291.05695 * 4 3 2 30 30 H 1.09004 * 109.46313 * 51.05284 * 4 3 2 31 31 H 1.09000 * 109.47185 * 185.00081 * 5 4 3 32 32 H 1.09002 * 109.47666 * 305.00563 * 5 4 3 33 33 H 0.96693 * 113.99926 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00454 * 63.95609 * 7 3 2 35 35 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 36 36 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 37 37 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 39 39 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8792 -0.4297 6 8 3.6816 3.6299 0.7643 7 7 1.6747 2.0261 1.1558 8 6 0.8411 3.0844 1.1164 9 8 0.3959 3.4682 0.0522 10 6 0.4687 3.7777 2.3657 11 6 0.9868 3.3371 3.5895 12 6 0.6417 3.9707 4.7460 13 6 -0.2291 5.0775 4.7073 14 6 -0.5844 5.7407 5.9011 15 1 -0.8854 6.7775 5.8739 16 6 -0.5465 5.0534 7.1228 17 7 -0.5112 3.7476 7.1369 18 14 -0.5467 6.0051 8.7302 19 1 -1.9462 6.2197 9.1782 20 1 0.1907 5.2333 9.7626 21 1 0.1151 7.3190 8.5276 22 6 -0.7438 5.5205 3.4729 23 6 -0.3977 4.8767 2.3222 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9807 1.0226 0.6606 30 1 3.7290 0.8374 -1.0917 31 1 4.9732 2.9044 -0.6758 32 1 3.3384 3.3143 -1.2485 33 1 3.9379 4.5600 0.6996 34 1 2.0296 1.7197 2.0050 35 1 1.6582 2.4915 3.6175 36 1 1.0387 3.6275 5.6900 37 1 -0.4846 3.2721 7.9820 38 1 -1.4113 6.3687 3.4383 39 1 -0.7920 5.2152 1.3755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823869219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:53 Heat of formation + Delta-G solvation = -55.081699 kcal Electronic energy + Delta-G solvation = -21871.058009 eV Core-core repulsion = 18585.625235 eV Total energy + Delta-G solvation = -3285.432774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.97700 -39.34281 -38.11516 -37.08971 -35.60370 -33.46847 -32.27082 -31.57961 -31.23957 -28.51267 -27.29156 -24.10199 -23.14670 -22.91333 -22.33977 -21.19466 -19.32621 -18.53131 -18.40384 -17.67726 -17.14817 -17.05432 -15.79977 -15.69913 -15.38846 -15.25558 -14.92993 -14.75062 -14.51667 -14.30009 -13.89234 -13.65732 -13.42801 -13.17816 -13.16363 -12.81874 -12.75881 -12.59519 -12.32569 -12.10158 -12.02914 -11.74443 -11.34652 -11.08834 -10.89551 -10.52247 -9.92699 -9.66340 -9.52625 -9.34879 -8.75066 -6.44343 0.54136 1.18493 1.40068 1.44547 1.55541 1.98783 2.17941 2.30523 2.90110 3.37208 3.50056 3.75216 4.13274 4.21657 4.24856 4.31556 4.38371 4.42352 4.49304 4.52745 4.60454 4.76759 4.86222 4.92353 4.95881 5.02185 5.06649 5.20635 5.30114 5.33769 5.62517 5.85489 5.92053 5.98430 6.03700 6.26514 6.54578 6.58079 6.81093 6.82534 6.89910 6.93756 7.92483 8.20494 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.004241 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.295171 B = 6600.316399 C = 6720.785686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 N -0.317 5.317 4 C 0.035 3.965 5 C 0.079 3.921 6 O -0.583 6.583 7 N -0.556 5.556 8 C 0.607 3.393 9 O -0.592 6.592 10 C -0.276 4.276 11 C -0.051 4.051 12 C -0.196 4.196 13 C 0.102 3.898 14 C -0.479 4.479 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.804 5.804 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.257 1.257 22 C -0.251 4.251 23 C -0.034 4.034 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.384 0.616 34 H 0.380 0.620 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.295 0.705 38 H 0.104 0.896 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -6.907 -6.585 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 N -0.135 5.135 4 C -0.092 4.092 5 C 0.001 3.999 6 O -0.390 6.390 7 N -0.300 5.300 8 C 0.400 3.600 9 O -0.474 6.474 10 C -0.281 4.281 11 C -0.070 4.070 12 C -0.215 4.215 13 C 0.099 3.901 14 C -0.506 4.506 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.428 5.428 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.181 1.181 22 C -0.270 4.270 23 C -0.053 4.053 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.232 0.768 34 H 0.220 0.780 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.222 -7.221 -7.359 13.187 hybrid contribution 0.536 0.334 1.403 1.539 sum 8.759 -6.887 -5.956 12.634 Atomic orbital electron populations 1.21662 0.95465 1.01888 1.00907 1.22678 0.96275 0.87453 1.02914 1.62875 1.14131 1.15583 1.20908 1.22858 0.86309 0.96880 1.03149 1.22213 0.99166 0.91556 0.86922 1.86551 1.88849 1.26415 1.37170 1.44804 1.49450 1.31552 1.04243 1.17905 0.76181 0.77926 0.87952 1.90564 1.56968 1.66926 1.32964 1.19146 1.12225 1.04536 0.92211 1.20625 0.97020 0.97572 0.91752 1.20963 1.02482 1.00877 0.97191 1.18097 0.88017 0.91106 0.92876 1.20072 1.39573 0.99108 0.91889 0.89760 1.26902 0.90828 0.95580 1.04693 1.69772 1.32421 1.09560 1.31063 0.85134 0.79668 0.79189 0.75388 1.18575 1.18704 1.18069 1.20847 1.07779 1.05457 0.92932 1.20469 0.94397 0.93557 0.96913 0.95564 0.93494 0.89826 0.86817 0.93233 0.92958 0.85387 0.90634 0.94778 0.76767 0.77980 0.86982 0.87160 0.89368 0.87823 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.98 71.98 0.72 -3.11 16 2 C 0.03 0.78 5.90 86.30 0.51 1.28 16 3 N -0.32 -9.24 4.28 -513.89 -2.20 -11.44 16 4 C 0.04 0.77 5.71 86.30 0.49 1.26 16 5 C 0.08 1.88 7.35 71.98 0.53 2.41 16 6 O -0.58 -17.20 11.29 -148.98 -1.68 -18.88 16 7 N -0.56 -19.39 2.63 -175.73 -0.46 -19.85 16 8 C 0.61 26.60 6.75 86.73 0.59 27.19 16 9 O -0.59 -29.48 16.65 -3.97 -0.07 -29.55 16 10 C -0.28 -12.98 5.89 -19.93 -0.12 -13.10 16 11 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 12 C -0.20 -9.95 8.63 22.47 0.19 -9.76 16 13 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 14 C -0.48 -24.69 9.05 23.46 0.21 -24.47 16 15 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 16 C 0.04 1.81 5.15 85.35 0.44 2.25 16 17 N -0.80 -39.38 10.95 21.87 0.24 -39.14 16 18 Si 0.99 35.49 29.59 68.60 2.03 37.52 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 23 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 24 H 0.03 0.86 7.56 -2.39 -0.02 0.84 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.11 1.88 7.97 -2.38 -0.02 1.86 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.13 1.88 7.97 -2.38 -0.02 1.86 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.38 9.17 9.12 -74.06 -0.68 8.49 16 34 H 0.38 12.47 6.83 -215.49 -1.47 11.00 16 35 H 0.11 4.40 6.37 -2.91 -0.02 4.38 16 36 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 37 H 0.30 12.86 8.29 -92.70 -0.77 12.09 16 38 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -66.57 328.15 0.87 -65.70 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -1.07 Total: 42.45 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.09 Total: -26.80 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -2.42 Total: -70.43 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -1.75 Total: -48.43 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -66.57 0.87 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823869219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.616 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds