Wall clock time and date at job start Mon Mar 30 2020 23:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.52997 * 109.47002 * 120.00123 * 2 1 3 5 5 O 1.42903 * 109.46967 * 55.00211 * 4 2 1 6 6 N 1.46899 * 109.46926 * 240.00286 * 2 1 3 7 7 C 1.46901 * 110.99819 * 176.04415 * 6 2 1 8 8 N 1.36604 * 111.00005 * 299.99856 * 6 2 1 9 9 C 1.34771 * 119.99801 * 120.00472 * 8 6 2 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 6 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 6 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47191 * 299.99691 * 1 2 3 26 26 H 1.09003 * 109.47099 * 59.99857 * 1 2 3 27 27 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47006 * 174.99739 * 4 2 1 29 29 H 1.08997 * 109.47073 * 294.99763 * 4 2 1 30 30 H 0.96703 * 113.99380 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47255 * 183.95216 * 7 6 2 32 32 H 1.08997 * 109.47241 * 303.95669 * 7 6 2 33 33 H 1.08999 * 109.47091 * 63.96011 * 7 6 2 34 34 H 0.96994 * 120.00065 * 300.00342 * 8 6 2 35 35 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 36 36 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 37 37 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 39 39 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.4701 -2.0304 1.3093 6 7 2.0196 -0.6924 -1.1995 7 6 3.4850 -0.6306 -1.2817 8 7 1.5816 -1.9860 -1.2311 9 6 0.8205 -2.4148 -2.2573 10 8 0.5232 -1.6502 -3.1548 11 6 0.3466 -3.8127 -2.2912 12 6 0.6942 -4.6926 -1.2591 13 6 0.2542 -5.9826 -1.2830 14 6 -0.5416 -6.4332 -2.3548 15 6 -0.9940 -7.7694 -2.3875 16 1 -1.2427 -8.2324 -3.3309 17 6 -1.1208 -8.4960 -1.1948 18 7 -1.1649 -7.8691 -0.0495 19 14 -1.2266 -10.3603 -1.2438 20 1 0.0030 -10.9096 -1.8696 21 1 -1.3544 -10.8855 0.1394 22 1 -2.4118 -10.7681 -2.0401 23 6 -0.8839 -5.5457 -3.3940 24 6 -0.4437 -4.2560 -3.3585 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.7516 -0.1583 2.1369 30 1 1.7505 -2.5464 2.0776 31 1 3.8163 -1.0892 -2.2134 32 1 3.8069 0.4104 -1.2544 33 1 3.9192 -1.1674 -0.4382 34 1 1.8184 -2.5958 -0.5150 35 1 1.3077 -4.3473 -0.4401 36 1 0.5195 -6.6594 -0.4844 37 1 -1.2522 -8.3718 0.7755 38 1 -1.4934 -5.8867 -4.2178 39 1 -0.7053 -3.5750 -4.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823939091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:39 Heat of formation + Delta-G solvation = -31.072662 kcal Electronic energy + Delta-G solvation = -21954.744834 eV Core-core repulsion = 18670.353169 eV Total energy + Delta-G solvation = -3284.391664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79512 -37.99309 -36.81381 -35.64441 -33.78321 -32.38739 -30.72459 -29.60626 -29.33244 -26.39923 -25.91484 -24.58750 -22.07780 -20.97780 -20.37158 -19.44155 -17.76959 -17.45554 -16.99194 -16.02680 -15.87411 -15.39250 -14.75521 -14.14294 -13.98236 -13.82790 -13.27069 -13.08695 -12.94906 -12.75485 -12.65710 -12.41591 -12.03294 -11.85444 -11.55311 -11.40809 -11.26445 -11.21959 -11.09546 -10.93665 -10.57282 -10.18547 -9.97338 -9.48982 -9.28544 -8.81573 -8.45616 -8.37796 -7.63518 -7.46529 -6.97274 -4.53688 2.35097 2.96247 2.97042 3.01867 3.11316 3.33508 3.78068 3.97911 4.04511 4.66490 4.72858 4.85092 4.97024 5.15730 5.34196 5.42850 5.51301 5.63814 5.65725 5.88302 5.92081 6.14286 6.17529 6.22317 6.40789 6.55835 6.84343 6.89300 6.98916 7.10564 7.21136 7.46226 7.51305 7.74108 7.87521 7.93321 8.00482 8.14865 8.46238 8.48337 8.70021 8.82867 9.51500 9.94799 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.004430 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.461283 B = 6319.357731 C = 6910.802158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.100 0.900 4 C 0.040 3.960 5 O -0.558 6.558 6 N -0.290 5.290 7 C 0.005 3.995 8 N -0.578 5.578 9 C 0.585 3.415 10 O -0.559 6.559 11 C -0.275 4.275 12 C -0.059 4.059 13 C -0.179 4.179 14 C 0.129 3.871 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.774 5.774 19 Si 0.912 3.088 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.239 4.239 24 C -0.023 4.023 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.378 0.622 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.391 0.609 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 7.893 6.815 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.045 4.045 3 H 0.118 0.882 4 C -0.040 4.040 5 O -0.363 6.363 6 N -0.106 5.106 7 C -0.144 4.144 8 N -0.331 5.331 9 C 0.379 3.621 10 O -0.437 6.437 11 C -0.281 4.281 12 C -0.079 4.079 13 C -0.199 4.199 14 C 0.125 3.875 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.398 5.398 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.226 0.774 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.419 8.820 5.499 12.216 hybrid contribution 0.797 -1.504 1.932 2.575 sum 7.217 7.316 7.431 12.682 Atomic orbital electron populations 1.21639 0.92875 1.03716 1.01179 1.22428 0.98141 0.97175 0.86742 0.88231 1.23001 0.96633 0.84938 0.99387 1.86532 1.73007 1.26742 1.50027 1.62867 1.09076 1.02086 1.36554 1.22900 0.87813 1.02020 1.01654 1.45580 1.55287 1.05430 1.26824 1.18483 0.76017 0.87632 0.79931 1.90606 1.58075 1.57334 1.37732 1.18886 1.15037 0.92223 1.01943 1.20502 0.97796 0.94187 0.95378 1.20956 1.02122 0.95219 1.01567 1.17771 0.87098 0.92273 0.90318 1.19790 1.37170 0.96501 0.93972 0.89851 1.26071 0.92090 1.01551 0.94827 1.69750 1.32024 1.38684 0.99302 0.86290 0.80257 0.81452 0.78403 1.18541 1.20136 1.18701 1.20705 1.08614 0.93705 1.02807 1.20354 0.93612 0.95062 0.95203 0.92830 0.91844 0.91046 0.93571 0.93031 0.77441 0.90667 0.90603 0.95192 0.76341 0.89263 0.86328 0.90330 0.88435 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.00 37.16 0.33 -1.67 16 2 C 0.06 0.82 2.95 -67.72 -0.20 0.62 16 3 H 0.10 1.03 8.12 -51.93 -0.42 0.61 16 4 C 0.04 0.42 6.44 37.16 0.24 0.65 16 5 O -0.56 -6.76 9.76 -35.23 -0.34 -7.10 16 6 N -0.29 -4.64 4.52 -114.01 -0.51 -5.15 16 7 C 0.00 0.06 9.58 60.07 0.58 0.63 16 8 N -0.58 -10.65 3.33 30.48 0.10 -10.55 16 9 C 0.59 13.29 7.87 -12.42 -0.10 13.20 16 10 O -0.56 -14.22 16.65 5.28 0.09 -14.13 16 11 C -0.28 -6.54 5.89 -104.73 -0.62 -7.16 16 12 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 13 C -0.18 -4.47 8.63 -39.27 -0.34 -4.81 16 14 C 0.13 3.33 5.58 -106.80 -0.60 2.74 16 15 C -0.45 -11.28 9.04 -37.74 -0.34 -11.62 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.08 1.78 5.14 -17.31 -0.09 1.69 16 18 N -0.77 -18.78 10.95 55.56 0.61 -18.17 16 19 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 C -0.24 -5.92 9.73 -39.27 -0.38 -6.30 16 24 C -0.02 -0.56 9.52 -39.61 -0.38 -0.94 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.27 7.01 -51.93 -0.36 0.91 16 28 H 0.05 0.42 6.35 -51.93 -0.33 0.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.38 2.96 9.12 45.56 0.42 3.37 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.03 0.33 6.50 -51.93 -0.34 -0.01 16 34 H 0.39 6.74 4.04 -185.16 -0.75 5.99 16 35 H 0.09 1.79 6.37 -52.49 -0.33 1.45 16 36 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 37 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.10 2.39 7.63 -52.48 -0.40 1.99 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -30.80 321.22 -7.44 -38.25 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.93 Total: 14.27 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.26 Total: -14.70 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.20 Total: -33.87 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.26 Total: -21.23 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.80 -7.44 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823939091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.175 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds