Wall clock time and date at job start Mon Mar 30 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.52997 * 109.47002 * 120.00123 * 2 1 3 5 5 O 1.42903 * 109.46967 * 55.00211 * 4 2 1 6 6 N 1.46899 * 109.46926 * 240.00286 * 2 1 3 7 7 C 1.46901 * 110.99819 * 176.04415 * 6 2 1 8 8 N 1.36604 * 111.00005 * 299.99856 * 6 2 1 9 9 C 1.34771 * 119.99801 * 120.00472 * 8 6 2 10 10 O 1.21592 * 120.00386 * 359.97438 * 9 8 6 11 11 C 1.47645 * 120.00113 * 180.02562 * 9 8 6 12 12 C 1.40016 * 119.89252 * 359.71518 * 11 9 8 13 13 C 1.36316 * 120.10714 * 179.71535 * 12 11 9 14 14 C 1.40888 * 119.88956 * 0.56771 * 13 12 11 15 15 C 1.41111 * 120.10467 * 179.68996 * 14 13 12 16 16 H 1.07998 * 120.00173 * 204.64973 * 15 14 13 17 17 C 1.40230 * 119.99772 * 24.65401 * 15 14 13 18 18 N 1.30645 * 119.99785 * 17.86167 * 17 15 14 19 19 Si 1.86794 * 120.00113 * 197.86268 * 17 15 14 20 20 H 1.48500 * 109.46997 * 59.99881 * 19 17 15 21 21 H 1.48501 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47076 * 300.00343 * 19 17 15 23 23 C 1.40889 * 119.79666 * 359.71007 * 14 13 12 24 24 C 1.36320 * 119.88553 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47191 * 299.99691 * 1 2 3 26 26 H 1.09003 * 109.47099 * 59.99857 * 1 2 3 27 27 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47006 * 174.99739 * 4 2 1 29 29 H 1.08997 * 109.47073 * 294.99763 * 4 2 1 30 30 H 0.96703 * 113.99380 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47255 * 183.95216 * 7 6 2 32 32 H 1.08997 * 109.47241 * 303.95669 * 7 6 2 33 33 H 1.08999 * 109.47091 * 63.96011 * 7 6 2 34 34 H 0.96994 * 120.00065 * 300.00342 * 8 6 2 35 35 H 1.08000 * 119.94532 * 0.02562 * 12 11 9 36 36 H 1.07995 * 120.05570 * 180.25331 * 13 12 11 37 37 H 0.97005 * 119.99884 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.05851 * 179.97438 * 23 14 13 39 39 H 1.08003 * 119.94114 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.4701 -2.0304 1.3093 6 7 2.0196 -0.6924 -1.1995 7 6 3.4850 -0.6306 -1.2817 8 7 1.5816 -1.9860 -1.2311 9 6 0.8205 -2.4148 -2.2573 10 8 0.5232 -1.6502 -3.1548 11 6 0.3466 -3.8127 -2.2912 12 6 0.6942 -4.6926 -1.2591 13 6 0.2542 -5.9826 -1.2830 14 6 -0.5416 -6.4332 -2.3548 15 6 -0.9940 -7.7694 -2.3875 16 1 -1.2427 -8.2324 -3.3309 17 6 -1.1208 -8.4960 -1.1948 18 7 -1.1649 -7.8691 -0.0495 19 14 -1.2266 -10.3603 -1.2438 20 1 0.0030 -10.9096 -1.8696 21 1 -1.3544 -10.8855 0.1394 22 1 -2.4118 -10.7681 -2.0401 23 6 -0.8839 -5.5457 -3.3940 24 6 -0.4437 -4.2560 -3.3585 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.7516 -0.1583 2.1369 30 1 1.7505 -2.5464 2.0776 31 1 3.8163 -1.0892 -2.2134 32 1 3.8069 0.4104 -1.2544 33 1 3.9192 -1.1674 -0.4382 34 1 1.8184 -2.5958 -0.5150 35 1 1.3077 -4.3473 -0.4401 36 1 0.5195 -6.6594 -0.4844 37 1 -1.2522 -8.3718 0.7755 38 1 -1.4934 -5.8867 -4.2178 39 1 -0.7053 -3.5750 -4.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823939091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:38 Heat of formation + Delta-G solvation = -52.184926 kcal Electronic energy + Delta-G solvation = -21955.660330 eV Core-core repulsion = 18670.353169 eV Total energy + Delta-G solvation = -3285.307161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18254 -39.57974 -38.44569 -36.78859 -35.62729 -33.75641 -32.20842 -31.30550 -31.06852 -27.86532 -27.12487 -25.87267 -23.72630 -22.79471 -21.80989 -20.97596 -19.33465 -18.88541 -18.29746 -17.43662 -17.16192 -16.96816 -16.04657 -15.71836 -15.37997 -15.29339 -14.92588 -14.73998 -14.44675 -13.99383 -13.84746 -13.78062 -13.58757 -13.40299 -13.17527 -12.83106 -12.62002 -12.60369 -12.41762 -12.32721 -12.20443 -11.75999 -11.34814 -11.09292 -10.99725 -10.57945 -9.99543 -9.54248 -9.53121 -9.38131 -8.76570 -6.45617 0.50389 1.17751 1.40296 1.46583 1.53361 2.00829 2.17305 2.24464 2.84761 3.15638 3.71945 3.73227 3.95710 4.01347 4.30224 4.33049 4.40232 4.44127 4.48914 4.53856 4.63941 4.70236 4.84238 4.93086 4.95165 5.02156 5.05635 5.19446 5.32826 5.35216 5.61556 5.84893 5.95995 5.97515 6.02454 6.24745 6.49495 6.56459 6.79315 6.80066 6.89736 6.94086 7.90331 8.18707 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.004430 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.461283 B = 6319.357731 C = 6910.802158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.132 0.868 4 C 0.044 3.956 5 O -0.587 6.587 6 N -0.322 5.322 7 C 0.005 3.995 8 N -0.560 5.560 9 C 0.583 3.417 10 O -0.595 6.595 11 C -0.288 4.288 12 C -0.049 4.049 13 C -0.197 4.197 14 C 0.102 3.898 15 C -0.476 4.476 16 H 0.085 0.915 17 C 0.039 3.961 18 N -0.799 5.799 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.253 4.253 24 C -0.034 4.034 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.396 0.604 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.397 0.603 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.297 0.703 38 H 0.105 0.895 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 7.943 8.765 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.150 0.850 4 C -0.035 4.035 5 O -0.396 6.396 6 N -0.139 5.139 7 C -0.142 4.142 8 N -0.311 5.311 9 C 0.376 3.624 10 O -0.477 6.477 11 C -0.293 4.293 12 C -0.068 4.068 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.503 4.503 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.423 5.423 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.183 1.183 23 C -0.272 4.272 24 C -0.053 4.053 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.246 0.754 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.739 8.884 7.504 13.968 hybrid contribution 0.404 -1.401 1.385 2.011 sum 8.143 7.483 8.889 14.189 Atomic orbital electron populations 1.21597 0.94796 1.01235 1.01459 1.22591 0.96588 0.98824 0.86824 0.85004 1.23002 0.97456 0.84270 0.98798 1.86461 1.73763 1.27881 1.51468 1.62855 1.11331 1.00401 1.39274 1.22941 0.85566 1.04228 1.01479 1.45242 1.53573 1.06983 1.25306 1.18329 0.76489 0.86964 0.80586 1.90573 1.59791 1.57996 1.39352 1.19159 1.14897 0.93370 1.01911 1.20674 0.97180 0.93271 0.95637 1.20988 1.02979 0.96016 1.01608 1.18125 0.87873 0.93107 0.91039 1.20082 1.38332 0.96882 0.95045 0.89675 1.26920 0.90966 1.06285 0.93836 1.69771 1.31503 1.40860 1.00143 0.85160 0.80221 0.74912 0.78968 1.18222 1.18728 1.18332 1.20845 1.09222 0.93922 1.03213 1.20488 0.94044 0.95036 0.95739 0.90065 0.94071 0.94782 0.91598 0.90545 0.75383 0.92559 0.87446 0.93256 0.75617 0.86442 0.86777 0.89212 0.87729 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.00 71.98 0.65 -3.13 16 2 C 0.06 1.37 2.95 44.91 0.13 1.50 16 3 H 0.13 2.20 8.12 -2.38 -0.02 2.18 16 4 C 0.04 0.75 6.44 71.98 0.46 1.21 16 5 O -0.59 -12.86 9.76 -148.98 -1.45 -14.31 16 6 N -0.32 -9.76 4.52 -514.61 -2.32 -12.08 16 7 C 0.01 0.12 9.58 127.69 1.22 1.34 16 8 N -0.56 -20.27 3.33 -175.73 -0.59 -20.85 16 9 C 0.58 26.91 7.87 86.73 0.68 27.59 16 10 O -0.59 -31.08 16.65 -4.01 -0.07 -31.15 16 11 C -0.29 -13.98 5.89 -19.93 -0.12 -14.10 16 12 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 13 C -0.20 -9.98 8.63 22.47 0.19 -9.78 16 14 C 0.10 5.42 5.58 -21.28 -0.12 5.30 16 15 C -0.48 -24.46 9.04 23.46 0.21 -24.24 16 16 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.04 1.82 5.14 85.35 0.44 2.26 16 18 N -0.80 -38.62 10.95 21.87 0.24 -38.38 16 19 Si 0.99 35.04 29.60 68.60 2.03 37.07 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 23 C -0.25 -12.97 9.73 22.47 0.22 -12.75 16 24 C -0.03 -1.71 9.52 22.25 0.21 -1.49 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.03 1.21 7.01 -2.38 -0.02 1.19 16 28 H 0.07 0.89 6.35 -2.39 -0.02 0.88 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.40 5.19 9.12 -74.06 -0.68 4.51 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.11 1.73 8.12 -2.39 -0.02 1.72 16 33 H 0.05 0.92 6.50 -2.39 -0.02 0.90 16 34 H 0.40 13.17 4.04 -215.50 -0.87 12.30 16 35 H 0.12 4.62 6.37 -2.91 -0.02 4.60 16 36 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 37 H 0.30 12.72 8.29 -92.70 -0.77 11.95 16 38 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.10 5.00 7.63 -2.91 -0.02 4.98 16 Total: -1.00 -68.77 321.22 1.78 -67.00 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.46 Total: 41.04 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.40 Total: -28.34 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.67 Total: -71.31 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.52 Total: -45.46 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -68.77 1.78 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823939091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.812 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds