Wall clock time and date at job start Mon Mar 30 2020 23:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47064 * 2 1 4 4 C 1.52994 * 109.47617 * 120.00335 * 2 1 3 5 5 O 1.42903 * 109.47114 * 54.99321 * 4 2 1 6 6 N 1.46897 * 109.46750 * 240.00460 * 2 1 3 7 7 C 1.46904 * 111.00580 * 68.95025 * 6 2 1 8 8 N 1.36606 * 111.00065 * 304.99368 * 6 2 1 9 9 C 1.34771 * 120.00431 * 240.00384 * 8 6 2 10 10 O 1.21549 * 119.99790 * 359.97438 * 9 8 6 11 11 C 1.47887 * 120.00340 * 180.02562 * 9 8 6 12 12 C 1.39921 * 120.02190 * 359.72372 * 11 9 8 13 13 C 1.38328 * 120.35883 * 179.78646 * 12 11 9 14 14 C 1.37753 * 120.41147 * 0.46843 * 13 12 11 15 15 C 1.40747 * 120.03776 * 359.78819 * 14 13 12 16 16 C 1.41438 * 120.17799 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99720 * 334.92918 * 16 15 14 18 18 C 1.39936 * 119.99999 * 154.92797 * 16 15 14 19 19 N 1.30826 * 120.00293 * 342.58651 * 18 16 15 20 20 Si 1.86803 * 119.99850 * 162.58572 * 18 16 15 21 21 H 1.48502 * 109.46964 * 90.00238 * 20 18 16 22 22 H 1.48501 * 109.47131 * 209.99848 * 20 18 16 23 23 H 1.48500 * 109.47088 * 329.99775 * 20 18 16 24 24 C 1.38991 * 120.02798 * 179.97438 * 11 9 8 25 25 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47133 * 299.99644 * 1 2 3 27 27 H 1.08997 * 109.47774 * 59.99690 * 1 2 3 28 28 H 1.08998 * 109.47837 * 174.99725 * 4 2 1 29 29 H 1.09009 * 109.46929 * 295.00059 * 4 2 1 30 30 H 0.96698 * 113.99999 * 179.97438 * 5 4 2 31 31 H 1.08998 * 109.46919 * 296.05121 * 7 6 2 32 32 H 1.08998 * 109.46459 * 56.04476 * 7 6 2 33 33 H 1.08994 * 109.47558 * 176.04633 * 7 6 2 34 34 H 0.97004 * 119.99681 * 60.00126 * 8 6 2 35 35 H 1.08008 * 119.82122 * 0.02562 * 12 11 9 36 36 H 1.08001 * 119.79641 * 180.23100 * 13 12 11 37 37 H 1.07997 * 119.98111 * 179.76535 * 14 13 12 38 38 H 0.97000 * 120.00317 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.20026 * 359.95256 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.4702 -2.0304 1.3094 6 7 2.0195 -0.6924 -1.1995 7 6 1.7306 0.0858 -2.4115 8 7 1.4931 -1.9498 -1.2880 9 6 2.3087 -3.0227 -1.2988 10 8 3.5128 -2.8714 -1.2301 11 6 1.7389 -4.3839 -1.3952 12 6 0.3526 -4.5589 -1.4695 13 6 -0.1877 -5.8288 -1.5643 14 6 0.6317 -6.9360 -1.5770 15 6 2.0282 -6.7800 -1.4977 16 6 2.8723 -7.9149 -1.5100 17 1 2.4958 -8.8714 -1.1788 18 6 4.1951 -7.7983 -1.9513 19 7 4.5593 -6.7607 -2.6600 20 14 5.4410 -9.1243 -1.5283 21 1 5.4398 -10.1617 -2.5909 22 1 6.7935 -8.5192 -1.4289 23 1 5.0803 -9.7462 -0.2289 24 6 2.5796 -5.4907 -1.4068 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1264 -0.7995 1.2055 29 1 1.7517 -0.1583 2.1369 30 1 1.7506 -2.5464 2.0775 31 1 0.6516 0.1672 -2.5424 32 1 2.1610 1.0825 -2.3144 33 1 2.1649 -0.4148 -3.2769 34 1 0.5322 -2.0706 -1.3432 35 1 -0.2989 -3.6976 -1.4566 36 1 -1.2588 -5.9531 -1.6250 37 1 0.2022 -7.9244 -1.6475 38 1 5.4763 -6.6797 -2.9655 39 1 3.6500 -5.3605 -1.3463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823970499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:46 Heat of formation + Delta-G solvation = -26.142391 kcal Electronic energy + Delta-G solvation = -22200.541068 eV Core-core repulsion = 18916.363196 eV Total energy + Delta-G solvation = -3284.177872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74702 -37.86889 -36.61942 -35.75335 -33.67595 -32.28618 -30.58585 -29.46539 -29.25179 -26.71385 -25.34629 -24.68410 -22.52001 -20.92344 -20.29145 -19.30328 -17.78696 -17.35810 -16.68208 -15.77346 -15.64655 -15.09743 -14.70490 -14.32341 -14.03175 -13.79072 -13.41919 -13.14609 -12.95128 -12.84311 -12.67147 -12.40605 -12.27366 -11.96770 -11.59889 -11.33069 -11.09492 -11.01290 -10.85374 -10.69215 -10.43329 -9.91019 -9.81292 -9.61949 -9.14594 -8.85130 -8.52550 -8.45573 -7.53146 -7.43559 -6.73043 -4.34607 2.36790 2.88159 3.11722 3.15003 3.21377 3.24125 3.96573 4.09631 4.41357 4.53717 4.75214 4.89240 5.03854 5.30826 5.34026 5.43659 5.48167 5.67182 5.69440 5.76732 5.87903 5.89190 5.91709 6.14776 6.20305 6.36485 6.78361 6.90555 7.05687 7.10062 7.28410 7.46728 7.78362 7.84344 7.86152 7.92005 8.01644 8.21423 8.32537 8.59085 8.87752 8.91526 9.41215 10.21800 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.004952 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.197420 B = 5653.049605 C = 6042.308742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.063 3.937 3 H 0.098 0.902 4 C 0.088 3.912 5 O -0.556 6.556 6 N -0.290 5.290 7 C 0.004 3.996 8 N -0.570 5.570 9 C 0.591 3.409 10 O -0.532 6.532 11 C -0.115 4.115 12 C -0.212 4.212 13 C -0.100 4.100 14 C -0.213 4.213 15 C 0.100 3.900 16 C -0.462 4.462 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.784 5.784 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.093 4.093 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.376 0.624 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.379 0.621 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.284 0.716 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 11.568 4.613 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 H 0.116 0.884 4 C 0.009 3.991 5 O -0.360 6.360 6 N -0.105 5.105 7 C -0.144 4.144 8 N -0.318 5.318 9 C 0.382 3.618 10 O -0.407 6.407 11 C -0.120 4.120 12 C -0.233 4.233 13 C -0.118 4.118 14 C -0.233 4.233 15 C 0.097 3.903 16 C -0.491 4.491 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.113 4.113 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.222 0.778 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.220 0.780 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.430 11.927 4.002 13.337 hybrid contribution -0.611 -0.384 0.504 0.881 sum -5.041 11.543 4.507 13.378 Atomic orbital electron populations 1.22291 0.96651 1.03280 1.01913 1.22352 0.94024 0.97442 0.90799 0.88437 1.22046 0.97529 0.84373 0.95109 1.86567 1.72112 1.26726 1.50597 1.62961 1.52283 0.93745 1.01553 1.22903 0.99444 0.98422 0.93617 1.45206 1.08340 1.00243 1.77970 1.18492 0.85773 0.83419 0.74098 1.90652 1.14907 1.86281 1.48877 1.19419 0.93833 0.91222 1.07497 1.20321 0.93005 0.95678 1.14254 1.20419 0.97260 0.92978 1.01141 1.21078 0.94007 0.96564 1.11657 1.17581 0.91293 0.92751 0.88663 1.19553 0.95039 0.96147 1.38395 0.90215 1.25940 0.99367 0.96558 0.92619 1.69792 1.19723 1.27630 1.23744 0.86318 0.79487 0.80884 0.80096 1.19513 1.20000 1.18435 1.21593 0.99906 0.90403 0.99419 0.91041 0.91905 0.92732 0.92774 0.93950 0.77782 0.94957 0.90487 0.90562 0.78047 0.89628 0.89118 0.88760 0.90504 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.43 37.16 0.31 -1.68 16 2 C 0.06 0.77 2.90 -67.72 -0.20 0.57 16 3 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 4 C 0.09 1.13 6.84 37.15 0.25 1.39 16 5 O -0.56 -8.28 10.41 -35.23 -0.37 -8.65 16 6 N -0.29 -4.55 4.48 -114.01 -0.51 -5.06 16 7 C 0.00 0.06 9.68 60.07 0.58 0.64 16 8 N -0.57 -10.24 3.02 30.54 0.09 -10.15 16 9 C 0.59 13.51 6.94 -12.31 -0.09 13.43 16 10 O -0.53 -14.02 16.66 5.32 0.09 -13.93 16 11 C -0.12 -2.78 5.87 -105.04 -0.62 -3.40 16 12 C -0.21 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.10 -2.17 10.01 -39.73 -0.40 -2.57 16 14 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 15 C 0.10 2.67 5.57 -106.87 -0.59 2.07 16 16 C -0.46 -12.30 9.05 -37.73 -0.34 -12.64 16 17 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 18 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 19 N -0.78 -21.13 10.97 55.55 0.61 -20.53 16 20 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.09 -2.52 8.23 -38.44 -0.32 -2.83 16 25 H 0.07 0.92 6.15 -51.93 -0.32 0.60 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.53 6.73 -51.93 -0.35 0.18 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.38 4.51 9.12 45.56 0.42 4.93 16 31 H 0.03 0.36 6.75 -51.93 -0.35 0.01 16 32 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.38 6.28 5.19 -185.15 -0.96 5.32 16 35 H 0.09 1.59 6.38 -52.48 -0.33 1.26 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 39 H 0.13 3.90 5.76 -52.49 -0.30 3.59 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -31.68 321.51 -7.64 -39.32 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.12 Total: 13.89 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.24 Total: -13.71 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.19 Total: -35.73 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.28 Total: -22.57 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.68 -7.64 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823970499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.175 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds