Wall clock time and date at job start Mon Mar 30 2020 23:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47064 * 2 1 4 4 C 1.52994 * 109.47617 * 120.00335 * 2 1 3 5 5 O 1.42903 * 109.47114 * 54.99321 * 4 2 1 6 6 N 1.46897 * 109.46750 * 240.00460 * 2 1 3 7 7 C 1.46904 * 111.00580 * 68.95025 * 6 2 1 8 8 N 1.36606 * 111.00065 * 304.99368 * 6 2 1 9 9 C 1.34771 * 120.00431 * 240.00384 * 8 6 2 10 10 O 1.21549 * 119.99790 * 359.97438 * 9 8 6 11 11 C 1.47887 * 120.00340 * 180.02562 * 9 8 6 12 12 C 1.39921 * 120.02190 * 359.72372 * 11 9 8 13 13 C 1.38328 * 120.35883 * 179.78646 * 12 11 9 14 14 C 1.37753 * 120.41147 * 0.46843 * 13 12 11 15 15 C 1.40747 * 120.03776 * 359.78819 * 14 13 12 16 16 C 1.41438 * 120.17799 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99720 * 334.92918 * 16 15 14 18 18 C 1.39936 * 119.99999 * 154.92797 * 16 15 14 19 19 N 1.30826 * 120.00293 * 342.58651 * 18 16 15 20 20 Si 1.86803 * 119.99850 * 162.58572 * 18 16 15 21 21 H 1.48502 * 109.46964 * 90.00238 * 20 18 16 22 22 H 1.48501 * 109.47131 * 209.99848 * 20 18 16 23 23 H 1.48500 * 109.47088 * 329.99775 * 20 18 16 24 24 C 1.38991 * 120.02798 * 179.97438 * 11 9 8 25 25 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47133 * 299.99644 * 1 2 3 27 27 H 1.08997 * 109.47774 * 59.99690 * 1 2 3 28 28 H 1.08998 * 109.47837 * 174.99725 * 4 2 1 29 29 H 1.09009 * 109.46929 * 295.00059 * 4 2 1 30 30 H 0.96698 * 113.99999 * 179.97438 * 5 4 2 31 31 H 1.08998 * 109.46919 * 296.05121 * 7 6 2 32 32 H 1.08998 * 109.46459 * 56.04476 * 7 6 2 33 33 H 1.08994 * 109.47558 * 176.04633 * 7 6 2 34 34 H 0.97004 * 119.99681 * 60.00126 * 8 6 2 35 35 H 1.08008 * 119.82122 * 0.02562 * 12 11 9 36 36 H 1.08001 * 119.79641 * 180.23100 * 13 12 11 37 37 H 1.07997 * 119.98111 * 179.76535 * 14 13 12 38 38 H 0.97000 * 120.00317 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.20026 * 359.95256 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.4702 -2.0304 1.3094 6 7 2.0195 -0.6924 -1.1995 7 6 1.7306 0.0858 -2.4115 8 7 1.4931 -1.9498 -1.2880 9 6 2.3087 -3.0227 -1.2988 10 8 3.5128 -2.8714 -1.2301 11 6 1.7389 -4.3839 -1.3952 12 6 0.3526 -4.5589 -1.4695 13 6 -0.1877 -5.8288 -1.5643 14 6 0.6317 -6.9360 -1.5770 15 6 2.0282 -6.7800 -1.4977 16 6 2.8723 -7.9149 -1.5100 17 1 2.4958 -8.8714 -1.1788 18 6 4.1951 -7.7983 -1.9513 19 7 4.5593 -6.7607 -2.6600 20 14 5.4410 -9.1243 -1.5283 21 1 5.4398 -10.1617 -2.5909 22 1 6.7935 -8.5192 -1.4289 23 1 5.0803 -9.7462 -0.2289 24 6 2.5796 -5.4907 -1.4068 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1264 -0.7995 1.2055 29 1 1.7517 -0.1583 2.1369 30 1 1.7506 -2.5464 2.0775 31 1 0.6516 0.1672 -2.5424 32 1 2.1610 1.0825 -2.3144 33 1 2.1649 -0.4148 -3.2769 34 1 0.5322 -2.0706 -1.3432 35 1 -0.2989 -3.6976 -1.4566 36 1 -1.2588 -5.9531 -1.6250 37 1 0.2022 -7.9244 -1.6475 38 1 5.4763 -6.6797 -2.9655 39 1 3.6500 -5.3605 -1.3463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823970499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:45 Heat of formation + Delta-G solvation = -48.778823 kcal Electronic energy + Delta-G solvation = -22201.522657 eV Core-core repulsion = 18916.363196 eV Total energy + Delta-G solvation = -3285.159461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19376 -39.46693 -38.30818 -36.99762 -35.57458 -33.68442 -32.08965 -31.25575 -30.79480 -27.68621 -27.18047 -25.99347 -24.08687 -22.77117 -21.68680 -20.87260 -19.55597 -18.47431 -18.18189 -17.29997 -16.98174 -16.81876 -16.43940 -15.69171 -15.31949 -15.19428 -15.04556 -14.80289 -14.46197 -14.23679 -14.03188 -13.90625 -13.44416 -13.17639 -12.96270 -12.89078 -12.74960 -12.51517 -12.28592 -12.17895 -11.85662 -11.80997 -11.48070 -11.03380 -10.89825 -10.64409 -10.02712 -9.64348 -9.41915 -9.34177 -8.63039 -6.34894 0.48913 1.04674 1.37949 1.48672 1.54483 1.88699 2.20435 2.29352 2.86718 3.38807 3.47651 3.75655 3.95378 4.10696 4.13384 4.37252 4.43322 4.46142 4.53381 4.54842 4.63284 4.74275 4.86957 4.91909 4.93604 4.96415 5.12169 5.23370 5.31065 5.35378 5.56197 5.89281 5.90669 5.96817 6.08987 6.31772 6.40445 6.57430 6.78523 6.87615 6.91581 6.98790 7.79474 8.33865 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.004952 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.197420 B = 5653.049605 C = 6042.308742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 H 0.128 0.872 4 C 0.083 3.917 5 O -0.578 6.578 6 N -0.322 5.322 7 C 0.005 3.995 8 N -0.547 5.547 9 C 0.591 3.409 10 O -0.579 6.579 11 C -0.124 4.124 12 C -0.195 4.195 13 C -0.096 4.096 14 C -0.218 4.218 15 C 0.069 3.931 16 C -0.499 4.499 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.827 5.827 20 Si 0.982 3.018 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.254 1.254 24 C -0.128 4.128 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.384 0.616 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.388 0.612 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.286 0.714 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 12.966 5.118 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.048 4.048 3 H 0.146 0.854 4 C 0.005 3.995 5 O -0.384 6.384 6 N -0.139 5.139 7 C -0.143 4.143 8 N -0.292 5.292 9 C 0.381 3.619 10 O -0.459 6.459 11 C -0.129 4.129 12 C -0.214 4.214 13 C -0.114 4.114 14 C -0.238 4.238 15 C 0.067 3.933 16 C -0.528 4.528 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.453 5.453 20 Si 0.802 3.198 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.178 1.178 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.232 0.768 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.230 0.770 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.801 13.353 4.511 15.649 hybrid contribution -0.065 -0.632 0.374 0.737 sum -6.866 12.721 4.885 15.259 Atomic orbital electron populations 1.22216 0.95030 1.02410 1.03655 1.22550 0.95335 0.98203 0.88675 0.85438 1.22212 0.96013 0.84120 0.97144 1.86513 1.72402 1.27971 1.51546 1.62949 1.53845 0.93038 1.04056 1.22939 1.00925 0.98929 0.91463 1.44752 1.07982 1.00700 1.75789 1.18332 0.85422 0.84154 0.73964 1.90622 1.16890 1.86926 1.51414 1.19686 0.94949 0.91451 1.06771 1.20737 0.92133 0.97294 1.11273 1.20880 0.99321 0.92002 0.99178 1.21377 0.93218 0.98307 1.10918 1.17925 0.92913 0.92833 0.89633 1.19847 0.96388 0.96473 1.40078 0.89803 1.26848 1.01040 0.98796 0.91792 1.69899 1.20166 1.29914 1.25299 0.85212 0.76479 0.77914 0.80178 1.18163 1.19818 1.17767 1.21376 0.98746 0.91938 1.02839 0.93089 0.89975 0.91216 0.95459 0.90517 0.76848 0.92808 0.87551 0.92792 0.76996 0.85771 0.84646 0.87378 0.90376 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.43 71.98 0.61 -2.51 16 2 C 0.06 1.31 2.90 44.91 0.13 1.44 16 3 H 0.13 2.04 8.03 -2.39 -0.02 2.02 16 4 C 0.08 2.02 6.84 71.98 0.49 2.51 16 5 O -0.58 -16.77 10.41 -148.98 -1.55 -18.32 16 6 N -0.32 -9.61 4.48 -514.63 -2.31 -11.91 16 7 C 0.00 0.11 9.68 127.69 1.24 1.35 16 8 N -0.55 -19.06 3.02 -175.58 -0.53 -19.59 16 9 C 0.59 27.54 6.94 86.80 0.60 28.14 16 10 O -0.58 -32.02 16.66 -3.87 -0.06 -32.09 16 11 C -0.12 -6.10 5.87 -20.13 -0.12 -6.21 16 12 C -0.19 -8.04 9.55 22.70 0.22 -7.82 16 13 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 14 C -0.22 -10.43 9.78 22.77 0.22 -10.21 16 15 C 0.07 3.84 5.57 -21.32 -0.12 3.72 16 16 C -0.50 -27.60 9.05 23.47 0.21 -27.39 16 17 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 18 C 0.03 1.59 5.14 85.25 0.44 2.03 16 19 N -0.83 -47.21 10.97 21.82 0.24 -46.97 16 20 Si 0.98 40.26 29.59 68.60 2.03 42.29 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.13 -7.31 8.23 23.01 0.19 -7.12 16 25 H 0.05 1.13 6.15 -2.39 -0.01 1.12 16 26 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 1.04 6.73 -2.39 -0.02 1.03 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.38 9.24 9.12 -74.06 -0.68 8.56 16 31 H 0.05 0.99 6.75 -2.39 -0.02 0.98 16 32 H 0.11 1.80 8.06 -2.39 -0.02 1.78 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.39 11.91 5.19 -215.49 -1.12 10.80 16 35 H 0.12 4.13 6.38 -2.91 -0.02 4.11 16 36 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 39 H 0.10 6.17 5.76 -2.91 -0.02 6.15 16 Total: -1.00 -73.70 321.51 1.44 -72.26 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -0.71 Total: 40.11 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.33 Total: -25.78 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.60 Total: -78.48 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.62 Total: -50.41 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -73.70 1.44 -72.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823970499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.484 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds