Wall clock time and date at job start Mon Mar 30 2020 23:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.53001 * 109.47165 * 240.00261 * 2 1 3 5 5 O 1.42909 * 109.46871 * 304.99707 * 4 2 1 6 6 N 1.46897 * 109.46999 * 120.00113 * 2 1 3 7 7 C 1.46904 * 110.99838 * 296.04428 * 6 2 1 8 8 N 1.36596 * 111.00365 * 60.00196 * 6 2 1 9 9 C 1.34777 * 120.00202 * 119.99552 * 8 6 2 10 10 O 1.21546 * 120.00182 * 0.02562 * 9 8 6 11 11 C 1.47890 * 119.99668 * 179.97438 * 9 8 6 12 12 C 1.39918 * 120.02788 * 359.72675 * 11 9 8 13 13 C 1.38322 * 120.35874 * 180.25389 * 12 11 9 14 14 C 1.37753 * 120.41193 * 0.04224 * 13 12 11 15 15 C 1.40751 * 120.04017 * 359.95832 * 14 13 12 16 16 C 1.41441 * 120.17941 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99451 * 334.92981 * 16 15 14 18 18 C 1.39935 * 120.00220 * 154.92783 * 16 15 14 19 19 N 1.30825 * 119.99735 * 342.58692 * 18 16 15 20 20 Si 1.86796 * 120.00048 * 162.59107 * 18 16 15 21 21 H 1.48496 * 109.47216 * 60.00008 * 20 18 16 22 22 H 1.48507 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47095 * 299.99847 * 20 18 16 24 24 C 1.38997 * 120.01825 * 180.02562 * 11 9 8 25 25 H 1.09003 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47431 * 300.00285 * 1 2 3 27 27 H 1.09004 * 109.47429 * 60.00307 * 1 2 3 28 28 H 1.08995 * 109.47633 * 64.99466 * 4 2 1 29 29 H 1.09002 * 109.47231 * 185.00080 * 4 2 1 30 30 H 0.96701 * 113.99621 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46588 * 183.95673 * 7 6 2 32 32 H 1.08998 * 109.47231 * 303.95458 * 7 6 2 33 33 H 1.09003 * 109.47028 * 63.95980 * 7 6 2 34 34 H 0.97003 * 119.99950 * 300.00000 * 8 6 2 35 35 H 1.07997 * 119.81900 * 0.27534 * 12 11 9 36 36 H 1.07998 * 119.79915 * 180.02562 * 13 12 11 37 37 H 1.08008 * 119.98451 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00017 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.20336 * 359.70713 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0304 -1.3094 6 7 2.0196 -0.6925 1.1994 7 6 1.6273 0.0261 2.4192 8 7 1.5817 -1.9860 1.2310 9 6 2.4712 -2.9984 1.2463 10 8 3.6631 -2.7606 1.2325 11 6 1.9969 -4.3988 1.2811 12 6 0.6251 -4.6731 1.3038 13 6 0.1740 -5.9802 1.3417 14 6 1.0696 -7.0267 1.3583 15 6 2.4534 -6.7703 1.3358 16 6 3.3756 -7.8427 1.3523 17 1 3.0898 -8.7941 1.7761 18 6 4.6580 -7.6709 0.8194 19 7 4.9032 -6.6689 0.0148 20 14 6.0198 -8.8723 1.2569 21 1 5.6319 -10.2390 0.8247 22 1 7.2729 -8.4726 0.5673 23 1 6.2372 -8.8606 2.7258 24 6 2.9139 -5.4433 1.2974 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -0.1584 -2.1370 29 1 3.1263 -0.7994 -1.2056 30 1 1.7500 -2.5461 -2.0781 31 1 2.0615 -0.4689 3.2879 32 1 1.9886 1.0532 2.3679 33 1 0.5408 0.0270 2.5068 34 1 0.6305 -2.1759 1.2423 35 1 -0.0854 -3.8599 1.2914 36 1 -0.8869 -6.1815 1.3586 37 1 0.7098 -8.0446 1.3883 38 1 5.7922 -6.5495 -0.3543 39 1 3.9737 -5.2362 1.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823970501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:49 Heat of formation + Delta-G solvation = -25.731269 kcal Electronic energy + Delta-G solvation = -22239.245105 eV Core-core repulsion = 18955.085060 eV Total energy + Delta-G solvation = -3284.160044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.75291 -37.86972 -36.61086 -35.71263 -33.67791 -32.31389 -30.54767 -29.45554 -29.24684 -26.73032 -25.33181 -24.66521 -22.51742 -20.92488 -20.27874 -19.30573 -17.78780 -17.30701 -16.66344 -15.78730 -15.64879 -15.10751 -14.69553 -14.30298 -13.98350 -13.78651 -13.44776 -13.14608 -12.94654 -12.86255 -12.67823 -12.40547 -12.21978 -11.97786 -11.58650 -11.34299 -11.09709 -11.02067 -10.82324 -10.67691 -10.44411 -9.90747 -9.78178 -9.62209 -9.14646 -8.85600 -8.51439 -8.45122 -7.53407 -7.43689 -6.73310 -4.34837 2.36513 2.89063 3.11417 3.13131 3.22179 3.24533 3.96430 4.09105 4.44503 4.53967 4.75132 4.90791 5.05688 5.31258 5.34596 5.46658 5.48460 5.68016 5.69369 5.78914 5.88832 5.89551 5.92278 6.15144 6.20664 6.37198 6.78224 6.90795 7.05471 7.10056 7.28232 7.46506 7.78375 7.84301 7.90175 7.92036 8.01560 8.21400 8.32695 8.58833 8.87518 8.91308 9.40979 10.21506 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.005007 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.880872 B = 5591.168478 C = 6002.718763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 H 0.098 0.902 4 C 0.087 3.913 5 O -0.557 6.557 6 N -0.290 5.290 7 C 0.004 3.996 8 N -0.568 5.568 9 C 0.590 3.410 10 O -0.533 6.533 11 C -0.115 4.115 12 C -0.211 4.211 13 C -0.100 4.100 14 C -0.213 4.213 15 C 0.100 3.900 16 C -0.463 4.463 17 H 0.079 0.921 18 C 0.074 3.926 19 N -0.785 5.785 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.093 4.093 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.377 0.623 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.380 0.620 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.284 0.716 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 11.251 -1.212 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 H 0.116 0.884 4 C 0.008 3.992 5 O -0.361 6.361 6 N -0.106 5.106 7 C -0.144 4.144 8 N -0.316 5.316 9 C 0.381 3.619 10 O -0.408 6.408 11 C -0.120 4.120 12 C -0.231 4.231 13 C -0.118 4.118 14 C -0.233 4.233 15 C 0.097 3.903 16 C -0.492 4.492 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.733 3.267 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.113 4.113 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.224 0.776 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.220 0.780 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.172 11.712 -0.842 12.831 hybrid contribution -0.589 -0.455 -0.491 0.891 sum -5.761 11.257 -1.332 12.716 Atomic orbital electron populations 1.22308 0.96729 1.03167 1.01934 1.22365 0.93921 0.97607 0.90696 0.88366 1.22034 0.97623 0.84422 0.95078 1.86543 1.72193 1.26678 1.50724 1.62982 1.53917 0.92364 1.01349 1.22901 0.98948 0.99096 0.93441 1.45181 1.08584 0.99642 1.78159 1.18513 0.85113 0.84182 0.74085 1.90655 1.16258 1.84914 1.49013 1.19416 0.94146 0.90820 1.07589 1.20321 0.93265 0.95377 1.14157 1.20420 0.97217 0.92997 1.01202 1.21082 0.93425 0.96817 1.11963 1.17576 0.91423 0.92492 0.88792 1.19533 0.96167 0.98661 1.34832 0.90245 1.25931 0.99783 0.95970 0.92770 1.69782 1.23274 1.27229 1.20609 0.86352 0.79516 0.80781 0.80003 1.19053 1.20281 1.18765 1.21597 0.99414 0.90723 0.99609 0.91229 0.92641 0.91922 0.93930 0.92722 0.77564 0.90658 0.90497 0.94873 0.77987 0.89580 0.89125 0.88770 0.90504 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.44 37.16 0.31 -1.68 16 2 C 0.06 0.79 2.95 -67.71 -0.20 0.59 16 3 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 4 C 0.09 1.17 6.80 37.16 0.25 1.42 16 5 O -0.56 -8.59 10.31 -35.23 -0.36 -8.95 16 6 N -0.29 -4.56 4.52 -114.01 -0.51 -5.07 16 7 C 0.00 0.06 9.58 60.07 0.58 0.63 16 8 N -0.57 -10.18 2.85 30.54 0.09 -10.09 16 9 C 0.59 13.44 7.02 -12.31 -0.09 13.36 16 10 O -0.53 -14.02 16.66 5.33 0.09 -13.93 16 11 C -0.12 -2.77 5.87 -105.04 -0.62 -3.39 16 12 C -0.21 -4.56 9.55 -38.92 -0.37 -4.93 16 13 C -0.10 -2.18 10.01 -39.73 -0.40 -2.57 16 14 C -0.21 -5.13 9.78 -38.81 -0.38 -5.51 16 15 C 0.10 2.66 5.57 -106.87 -0.59 2.07 16 16 C -0.46 -12.29 9.05 -37.73 -0.34 -12.63 16 17 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 18 C 0.07 1.90 5.14 -17.35 -0.09 1.81 16 19 N -0.78 -20.94 10.97 55.55 0.61 -20.33 16 20 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.09 -2.52 8.23 -38.44 -0.32 -2.83 16 25 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 26 H 0.05 0.54 6.58 -51.93 -0.34 0.20 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.38 4.94 9.12 45.56 0.42 5.35 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.03 0.36 6.61 -51.93 -0.34 0.02 16 34 H 0.38 6.30 5.32 -185.16 -0.99 5.31 16 35 H 0.09 1.60 6.38 -52.49 -0.33 1.27 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 38 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 39 H 0.13 3.89 5.77 -52.49 -0.30 3.58 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -31.28 321.33 -7.68 -38.96 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.14 Total: 14.28 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.25 Total: -13.67 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.18 Total: -35.50 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.27 Total: -22.89 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.28 -7.68 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823970501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.227 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds