Wall clock time and date at job start Mon Mar 30 2020 23:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.53001 * 109.47165 * 240.00261 * 2 1 3 5 5 O 1.42909 * 109.46871 * 304.99707 * 4 2 1 6 6 N 1.46897 * 109.46999 * 120.00113 * 2 1 3 7 7 C 1.46904 * 110.99838 * 296.04428 * 6 2 1 8 8 N 1.36596 * 111.00365 * 60.00196 * 6 2 1 9 9 C 1.34777 * 120.00202 * 119.99552 * 8 6 2 10 10 O 1.21546 * 120.00182 * 0.02562 * 9 8 6 11 11 C 1.47890 * 119.99668 * 179.97438 * 9 8 6 12 12 C 1.39918 * 120.02788 * 359.72675 * 11 9 8 13 13 C 1.38322 * 120.35874 * 180.25389 * 12 11 9 14 14 C 1.37753 * 120.41193 * 0.04224 * 13 12 11 15 15 C 1.40751 * 120.04017 * 359.95832 * 14 13 12 16 16 C 1.41441 * 120.17941 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99451 * 334.92981 * 16 15 14 18 18 C 1.39935 * 120.00220 * 154.92783 * 16 15 14 19 19 N 1.30825 * 119.99735 * 342.58692 * 18 16 15 20 20 Si 1.86796 * 120.00048 * 162.59107 * 18 16 15 21 21 H 1.48496 * 109.47216 * 60.00008 * 20 18 16 22 22 H 1.48507 * 109.47029 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47095 * 299.99847 * 20 18 16 24 24 C 1.38997 * 120.01825 * 180.02562 * 11 9 8 25 25 H 1.09003 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47431 * 300.00285 * 1 2 3 27 27 H 1.09004 * 109.47429 * 60.00307 * 1 2 3 28 28 H 1.08995 * 109.47633 * 64.99466 * 4 2 1 29 29 H 1.09002 * 109.47231 * 185.00080 * 4 2 1 30 30 H 0.96701 * 113.99621 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46588 * 183.95673 * 7 6 2 32 32 H 1.08998 * 109.47231 * 303.95458 * 7 6 2 33 33 H 1.09003 * 109.47028 * 63.95980 * 7 6 2 34 34 H 0.97003 * 119.99950 * 300.00000 * 8 6 2 35 35 H 1.07997 * 119.81900 * 0.27534 * 12 11 9 36 36 H 1.07998 * 119.79915 * 180.02562 * 13 12 11 37 37 H 1.08008 * 119.98451 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00017 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.20336 * 359.70713 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0304 -1.3094 6 7 2.0196 -0.6925 1.1994 7 6 1.6273 0.0261 2.4192 8 7 1.5817 -1.9860 1.2310 9 6 2.4712 -2.9984 1.2463 10 8 3.6631 -2.7606 1.2325 11 6 1.9969 -4.3988 1.2811 12 6 0.6251 -4.6731 1.3038 13 6 0.1740 -5.9802 1.3417 14 6 1.0696 -7.0267 1.3583 15 6 2.4534 -6.7703 1.3358 16 6 3.3756 -7.8427 1.3523 17 1 3.0898 -8.7941 1.7761 18 6 4.6580 -7.6709 0.8194 19 7 4.9032 -6.6689 0.0148 20 14 6.0198 -8.8723 1.2569 21 1 5.6319 -10.2390 0.8247 22 1 7.2729 -8.4726 0.5673 23 1 6.2372 -8.8606 2.7258 24 6 2.9139 -5.4433 1.2974 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -0.1584 -2.1370 29 1 3.1263 -0.7994 -1.2056 30 1 1.7500 -2.5461 -2.0781 31 1 2.0615 -0.4689 3.2879 32 1 1.9886 1.0532 2.3679 33 1 0.5408 0.0270 2.5068 34 1 0.6305 -2.1759 1.2423 35 1 -0.0854 -3.8599 1.2914 36 1 -0.8869 -6.1815 1.3586 37 1 0.7098 -8.0446 1.3883 38 1 5.7922 -6.5495 -0.3543 39 1 3.9737 -5.2362 1.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823970501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:48 Heat of formation + Delta-G solvation = -47.931329 kcal Electronic energy + Delta-G solvation = -22240.207771 eV Core-core repulsion = 18955.085060 eV Total energy + Delta-G solvation = -3285.122711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20165 -39.47330 -38.31428 -36.98057 -35.57052 -33.71972 -32.07353 -31.24928 -30.75893 -27.73271 -27.16381 -25.96351 -24.09012 -22.76810 -21.68370 -20.87467 -19.55281 -18.47929 -18.16150 -17.29822 -16.97974 -16.85966 -16.43139 -15.68366 -15.30955 -15.17606 -15.05006 -14.81160 -14.44913 -14.23269 -14.06791 -13.93831 -13.43946 -13.12910 -12.96629 -12.88702 -12.77753 -12.48985 -12.29720 -12.18077 -11.85333 -11.79901 -11.47804 -11.03281 -10.92522 -10.64693 -10.01402 -9.63886 -9.41661 -9.33758 -8.62576 -6.34463 0.49081 1.05417 1.37937 1.49862 1.52696 1.88835 2.20496 2.29345 2.86829 3.38844 3.45070 3.75784 3.94882 4.11311 4.13128 4.37527 4.44416 4.46398 4.53555 4.54082 4.64306 4.73064 4.87041 4.92367 4.93772 4.96769 5.12405 5.23741 5.30786 5.35693 5.56450 5.89203 5.91048 5.97257 6.09230 6.32123 6.40489 6.57678 6.78887 6.83504 6.91889 6.99019 7.79653 8.34002 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.005007 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.880872 B = 5591.168478 C = 6002.718763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 H 0.128 0.872 4 C 0.082 3.918 5 O -0.577 6.577 6 N -0.323 5.323 7 C 0.005 3.995 8 N -0.544 5.544 9 C 0.590 3.410 10 O -0.581 6.581 11 C -0.123 4.123 12 C -0.193 4.193 13 C -0.096 4.096 14 C -0.218 4.218 15 C 0.069 3.931 16 C -0.500 4.500 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.252 1.252 22 H -0.272 1.272 23 H -0.261 1.261 24 C -0.129 4.129 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.383 0.617 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.388 0.612 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.286 0.714 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 12.550 -1.097 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 H 0.145 0.855 4 C 0.004 3.996 5 O -0.383 6.383 6 N -0.140 5.140 7 C -0.142 4.142 8 N -0.290 5.290 9 C 0.380 3.620 10 O -0.460 6.460 11 C -0.128 4.128 12 C -0.213 4.213 13 C -0.114 4.114 14 C -0.238 4.238 15 C 0.067 3.933 16 C -0.529 4.529 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.176 1.176 22 H -0.197 1.197 23 H -0.186 1.186 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.230 0.770 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.612 13.035 -0.728 15.113 hybrid contribution -0.029 -0.684 -0.540 0.872 sum -7.641 12.351 -1.269 14.579 Atomic orbital electron populations 1.22230 0.94929 1.02386 1.03714 1.22544 0.95352 0.98251 0.88534 0.85485 1.22201 0.95895 0.84176 0.97313 1.86490 1.72419 1.27901 1.51503 1.62974 1.55714 0.91400 1.03886 1.22945 1.00288 0.99810 0.91201 1.44728 1.07985 1.00331 1.75941 1.18355 0.84933 0.84739 0.73960 1.90625 1.18276 1.85525 1.51565 1.19673 0.95078 0.91203 1.06829 1.20726 0.92563 0.96786 1.11193 1.20876 0.99125 0.92178 0.99219 1.21377 0.92742 0.98453 1.11239 1.17916 0.93039 0.92547 0.89775 1.19828 0.97576 0.99070 1.36428 0.89858 1.26824 1.01896 0.97684 0.92025 1.69888 1.23802 1.29312 1.22000 0.85265 0.76270 0.78735 0.79550 1.17602 1.19698 1.18588 1.21379 0.98381 0.92094 1.03099 0.93166 0.90939 0.90103 0.90565 0.95787 0.76899 0.92554 0.87624 0.92739 0.76964 0.85775 0.84683 0.87417 0.90394 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.44 71.98 0.61 -2.51 16 2 C 0.06 1.36 2.95 44.92 0.13 1.49 16 3 H 0.13 2.13 8.12 -2.39 -0.02 2.11 16 4 C 0.08 2.10 6.80 71.98 0.49 2.59 16 5 O -0.58 -17.41 10.31 -148.98 -1.54 -18.95 16 6 N -0.32 -9.61 4.52 -514.61 -2.32 -11.94 16 7 C 0.00 0.11 9.58 127.69 1.22 1.33 16 8 N -0.54 -18.92 2.85 -175.57 -0.50 -19.42 16 9 C 0.59 27.39 7.02 86.80 0.61 28.00 16 10 O -0.58 -32.04 16.66 -3.86 -0.06 -32.10 16 11 C -0.12 -6.03 5.87 -20.13 -0.12 -6.15 16 12 C -0.19 -7.94 9.55 22.70 0.22 -7.72 16 13 C -0.10 -3.92 10.01 22.17 0.22 -3.70 16 14 C -0.22 -10.41 9.78 22.77 0.22 -10.18 16 15 C 0.07 3.84 5.57 -21.32 -0.12 3.72 16 16 C -0.50 -27.62 9.05 23.47 0.21 -27.41 16 17 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 18 C 0.03 1.63 5.14 85.25 0.44 2.06 16 19 N -0.82 -46.63 10.97 21.82 0.24 -46.39 16 20 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 C -0.13 -7.32 8.23 23.01 0.19 -7.13 16 25 H 0.05 1.11 6.23 -2.39 -0.01 1.09 16 26 H 0.07 1.06 6.58 -2.39 -0.02 1.05 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.38 10.13 9.12 -74.06 -0.68 9.45 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 32 H 0.11 1.75 8.12 -2.39 -0.02 1.73 16 33 H 0.05 0.98 6.61 -2.39 -0.02 0.96 16 34 H 0.39 11.93 5.32 -215.49 -1.15 10.78 16 35 H 0.12 4.13 6.38 -2.91 -0.02 4.11 16 36 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 39 H 0.10 6.15 5.77 -2.91 -0.02 6.13 16 Total: -1.00 -72.77 321.33 1.43 -71.34 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.74 Total: 40.80 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.33 Total: -25.60 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.59 Total: -77.75 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.60 Total: -51.05 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -72.77 1.43 -71.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823970501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.410 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds