Wall clock time and date at job start Tue Mar 31 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00259 * 2 1 4 4 C 1.39673 * 120.00242 * 179.73444 * 2 1 3 5 5 C 1.38933 * 120.08076 * 173.78785 * 4 2 1 6 6 C 1.38081 * 119.92870 * 179.74642 * 5 4 2 7 7 C 1.38312 * 120.07298 * 0.52967 * 6 5 4 8 8 C 1.38265 * 120.14842 * 359.74826 * 7 6 5 9 9 C 1.50700 * 119.96061 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47027 * 269.97348 * 9 8 7 11 11 C 1.36939 * 119.99912 * 89.99941 * 10 9 8 12 12 H 1.07995 * 119.99914 * 18.07123 * 11 10 9 13 13 C 1.38813 * 119.99717 * 198.07714 * 11 10 9 14 14 N 1.31621 * 120.00628 * 7.40853 * 13 11 10 15 15 Si 1.86805 * 119.99803 * 187.41598 * 13 11 10 16 16 H 1.48508 * 109.46947 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47158 * 119.99566 * 15 13 11 18 18 H 1.48499 * 109.47020 * 239.99910 * 15 13 11 19 19 C 1.46505 * 120.00275 * 270.00275 * 10 9 8 20 20 C 1.50701 * 109.46877 * 86.35122 * 19 10 9 21 21 O 1.20827 * 120.00564 * 0.02562 * 20 19 10 22 22 O 1.34238 * 119.99596 * 180.02562 * 20 19 10 23 23 C 1.38123 * 120.07597 * 359.97292 * 8 7 6 24 24 H 1.09000 * 109.46547 * 185.39796 * 1 2 3 25 25 H 1.09006 * 109.46661 * 305.39261 * 1 2 3 26 26 H 1.08996 * 109.47405 * 65.39439 * 1 2 3 27 27 H 1.08994 * 109.47768 * 269.73370 * 3 2 1 28 28 H 1.09002 * 109.46561 * 29.73089 * 3 2 1 29 29 H 1.09004 * 109.47390 * 149.72700 * 3 2 1 30 30 H 1.08005 * 120.03106 * 0.02562 * 5 4 2 31 31 H 1.08001 * 119.96450 * 180.25572 * 6 5 4 32 32 H 1.08000 * 119.92668 * 179.76822 * 7 6 5 33 33 H 1.08999 * 109.47530 * 29.97467 * 9 8 7 34 34 H 1.09003 * 109.47324 * 149.97875 * 9 8 7 35 35 H 0.96996 * 120.00390 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47169 * 206.35389 * 19 10 9 37 37 H 1.09003 * 109.46771 * 326.35800 * 19 10 9 38 38 H 0.96700 * 116.99618 * 180.02562 * 22 20 19 39 39 H 1.08001 * 120.03849 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2096 0.0056 5 6 3.5467 -1.2156 -0.1245 6 6 4.2344 -2.4129 -0.1132 7 6 3.5469 -3.6060 0.0163 8 6 2.1698 -3.6040 0.1401 9 6 1.4250 -4.9064 0.2816 10 7 1.0594 -5.4065 -1.0460 11 6 1.9140 -6.2331 -1.7254 12 1 2.7010 -6.7493 -1.1959 13 6 1.7687 -6.4073 -3.0949 14 7 0.9076 -5.6708 -3.7645 15 14 2.7954 -7.6874 -3.9877 16 1 3.6813 -8.3771 -3.0156 17 1 1.8983 -8.6803 -4.6314 18 1 3.6232 -7.0220 -5.0255 19 6 -0.2204 -5.0224 -1.6467 20 6 -0.0604 -3.7127 -2.3749 21 8 1.0126 -3.1574 -2.3910 22 8 -1.1101 -3.1630 -3.0058 23 6 1.4761 -2.4095 0.1355 24 1 -0.3632 -1.0231 0.0967 25 1 -0.3633 0.5952 0.8378 26 1 -0.3634 0.4279 -0.9343 27 1 2.3834 1.5810 -1.0275 28 1 1.6064 2.0295 0.5097 29 1 3.1479 1.1396 0.5181 30 1 4.0837 -0.2845 -0.2297 31 1 5.3101 -2.4180 -0.2102 32 1 4.0869 -4.5413 0.0210 33 1 2.0611 -5.6362 0.7823 34 1 0.5220 -4.7464 0.8708 35 1 0.8063 -5.7923 -4.7214 36 1 -0.5375 -5.7926 -2.3497 37 1 -0.9710 -4.9134 -0.8639 38 1 -0.9587 -2.3226 -3.4594 39 1 0.4005 -2.4087 0.2327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830644200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:24 Heat of formation + Delta-G solvation = -14.928182 kcal Electronic energy + Delta-G solvation = -22909.559875 eV Core-core repulsion = 19625.868288 eV Total energy + Delta-G solvation = -3283.691587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.11809 -38.39606 -36.28389 -35.14057 -34.17411 -31.91926 -30.23968 -29.42384 -28.12516 -27.18221 -25.35754 -24.29517 -22.40889 -20.92816 -20.18236 -19.40209 -16.91996 -16.75353 -16.35180 -15.28532 -15.23712 -15.04898 -14.79074 -14.69794 -13.99861 -13.63954 -13.52717 -13.29882 -12.92548 -12.85992 -12.39629 -11.92069 -11.78903 -11.63473 -11.43339 -11.28060 -11.00290 -10.89836 -10.62384 -10.51353 -10.17796 -10.06844 -9.93706 -9.85597 -9.20088 -9.02817 -8.56540 -7.84042 -7.02983 -6.66484 -5.87922 -3.27143 2.27556 2.44684 3.36061 3.42741 3.44940 3.53580 4.09321 4.38066 4.65367 4.69547 5.18755 5.28054 5.38705 5.45388 5.55618 5.63077 5.65198 5.76535 5.82046 5.84255 6.02677 6.11192 6.24634 6.29210 6.43035 6.58477 6.63989 6.70971 7.02993 7.07710 7.24553 7.31135 7.55379 7.66331 7.68138 7.74622 8.01494 8.13418 8.23668 9.05729 9.58605 9.74683 10.13336 11.20478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.006862 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.610579 B = 4079.217630 C = 4703.407787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.645 5.645 3 C 0.103 3.897 4 C 0.207 3.793 5 C -0.209 4.209 6 C -0.084 4.084 7 C -0.151 4.151 8 C -0.026 4.026 9 C 0.172 3.828 10 N -0.560 5.560 11 C -0.240 4.240 12 H 0.080 0.920 13 C -0.001 4.001 14 N -0.914 5.914 15 Si 0.917 3.083 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.191 3.809 20 C 0.471 3.529 21 O -0.500 6.500 22 O -0.548 6.548 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.256 0.744 36 H 0.125 0.875 37 H 0.041 0.959 38 H 0.375 0.625 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 8.681 7.908 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.360 5.360 3 C -0.041 4.041 4 C 0.108 3.892 5 C -0.232 4.232 6 C -0.103 4.103 7 C -0.171 4.171 8 C -0.030 4.030 9 C 0.046 3.954 10 N -0.279 5.279 11 C -0.369 4.369 12 H 0.098 0.902 13 C -0.197 4.197 14 N -0.560 5.560 15 Si 0.748 3.252 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.218 1.218 19 C 0.062 3.938 20 C 0.310 3.690 21 O -0.384 6.384 22 O -0.358 6.358 23 C -0.184 4.184 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.059 0.941 38 H 0.230 0.770 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.492 8.518 7.952 11.748 hybrid contribution 0.823 0.366 -1.475 1.729 sum -0.669 8.884 6.477 11.015 Atomic orbital electron populations 1.21542 0.80339 1.02795 0.99879 1.46089 1.04430 1.03068 1.82441 1.21437 0.96874 0.85352 1.00447 1.17650 0.91099 0.85183 0.95226 1.20339 0.92285 0.97779 1.12771 1.20681 0.98449 0.92424 0.98699 1.20638 0.94077 0.96974 1.05427 1.20543 0.93806 0.95584 0.93046 1.20135 0.96310 0.90690 0.88233 1.44212 1.17256 1.50998 1.15398 1.19393 1.11101 1.16241 0.90118 0.90187 1.24932 0.99214 0.99347 0.96219 1.69672 1.38133 1.40564 1.07661 0.85972 0.79433 0.80300 0.79534 1.20265 1.21601 1.21825 1.20433 0.86811 0.91647 0.94938 1.25196 0.81155 0.86322 0.76289 1.90599 1.27224 1.61913 1.58692 1.84644 1.44460 1.40317 1.66409 1.20239 0.98073 0.90900 1.09198 0.90554 0.93537 0.93836 0.94262 0.92418 0.91794 0.87631 0.87543 0.87304 0.91988 0.93349 0.93283 0.85746 0.94102 0.77013 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 10.62 59.85 0.64 1.97 16 2 N -0.65 -10.24 3.41 -187.55 -0.64 -10.88 16 3 C 0.10 1.27 10.08 59.85 0.60 1.88 16 4 C 0.21 3.91 6.53 -83.78 -0.55 3.37 16 5 C -0.21 -3.87 9.16 -39.38 -0.36 -4.23 16 6 C -0.08 -1.59 10.04 -39.61 -0.40 -1.99 16 7 C -0.15 -3.12 9.70 -39.54 -0.38 -3.50 16 8 C -0.03 -0.54 4.37 -104.65 -0.46 -1.00 16 9 C 0.17 3.53 5.83 -5.19 -0.03 3.50 16 10 N -0.56 -13.42 2.13 -175.98 -0.37 -13.79 16 11 C -0.24 -6.29 9.74 -15.06 -0.15 -6.44 16 12 H 0.08 2.05 7.82 -52.49 -0.41 1.64 16 13 C 0.00 -0.01 5.21 -17.43 -0.09 -0.10 16 14 N -0.91 -25.61 8.58 55.49 0.48 -25.14 16 15 Si 0.92 21.77 29.56 -169.99 -5.02 16.74 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 C 0.19 4.44 5.54 -5.19 -0.03 4.41 16 20 C 0.47 11.28 6.13 36.01 0.22 11.50 16 21 O -0.50 -13.37 13.61 -18.75 -0.26 -13.63 16 22 O -0.55 -11.43 13.42 -39.28 -0.53 -11.96 16 23 C -0.16 -3.23 6.58 -39.38 -0.26 -3.48 16 24 H 0.08 1.12 5.31 -51.93 -0.28 0.85 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.57 8.07 -51.93 -0.42 0.16 16 29 H 0.06 0.76 6.49 -51.93 -0.34 0.42 16 30 H 0.11 1.70 6.33 -52.48 -0.33 1.37 16 31 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.06 1.20 7.97 -51.93 -0.41 0.78 16 34 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.13 3.17 6.16 -51.93 -0.32 2.85 16 37 H 0.04 0.82 7.94 -51.93 -0.41 0.41 16 38 H 0.37 6.50 9.10 45.56 0.41 6.91 16 39 H 0.10 1.99 5.74 -52.49 -0.30 1.69 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -32.18 319.24 -7.24 -39.43 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.47 Total: 8.54 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.24 Total: 5.88 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.54 Total: -49.81 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.78 Total: -25.59 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.18 -7.24 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830644200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.497 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds