Wall clock time and date at job start Tue Mar 31 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00259 * 2 1 4 4 C 1.39673 * 120.00242 * 179.73444 * 2 1 3 5 5 C 1.38933 * 120.08076 * 173.78785 * 4 2 1 6 6 C 1.38081 * 119.92870 * 179.74642 * 5 4 2 7 7 C 1.38312 * 120.07298 * 0.52967 * 6 5 4 8 8 C 1.38265 * 120.14842 * 359.74826 * 7 6 5 9 9 C 1.50700 * 119.96061 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47027 * 269.97348 * 9 8 7 11 11 C 1.36939 * 119.99912 * 89.99941 * 10 9 8 12 12 H 1.07995 * 119.99914 * 18.07123 * 11 10 9 13 13 C 1.38813 * 119.99717 * 198.07714 * 11 10 9 14 14 N 1.31621 * 120.00628 * 7.40853 * 13 11 10 15 15 Si 1.86805 * 119.99803 * 187.41598 * 13 11 10 16 16 H 1.48508 * 109.46947 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47158 * 119.99566 * 15 13 11 18 18 H 1.48499 * 109.47020 * 239.99910 * 15 13 11 19 19 C 1.46505 * 120.00275 * 270.00275 * 10 9 8 20 20 C 1.50701 * 109.46877 * 86.35122 * 19 10 9 21 21 O 1.20827 * 120.00564 * 0.02562 * 20 19 10 22 22 O 1.34238 * 119.99596 * 180.02562 * 20 19 10 23 23 C 1.38123 * 120.07597 * 359.97292 * 8 7 6 24 24 H 1.09000 * 109.46547 * 185.39796 * 1 2 3 25 25 H 1.09006 * 109.46661 * 305.39261 * 1 2 3 26 26 H 1.08996 * 109.47405 * 65.39439 * 1 2 3 27 27 H 1.08994 * 109.47768 * 269.73370 * 3 2 1 28 28 H 1.09002 * 109.46561 * 29.73089 * 3 2 1 29 29 H 1.09004 * 109.47390 * 149.72700 * 3 2 1 30 30 H 1.08005 * 120.03106 * 0.02562 * 5 4 2 31 31 H 1.08001 * 119.96450 * 180.25572 * 6 5 4 32 32 H 1.08000 * 119.92668 * 179.76822 * 7 6 5 33 33 H 1.08999 * 109.47530 * 29.97467 * 9 8 7 34 34 H 1.09003 * 109.47324 * 149.97875 * 9 8 7 35 35 H 0.96996 * 120.00390 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47169 * 206.35389 * 19 10 9 37 37 H 1.09003 * 109.46771 * 326.35800 * 19 10 9 38 38 H 0.96700 * 116.99618 * 180.02562 * 22 20 19 39 39 H 1.08001 * 120.03849 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2096 0.0056 5 6 3.5467 -1.2156 -0.1245 6 6 4.2344 -2.4129 -0.1132 7 6 3.5469 -3.6060 0.0163 8 6 2.1698 -3.6040 0.1401 9 6 1.4250 -4.9064 0.2816 10 7 1.0594 -5.4065 -1.0460 11 6 1.9140 -6.2331 -1.7254 12 1 2.7010 -6.7493 -1.1959 13 6 1.7687 -6.4073 -3.0949 14 7 0.9076 -5.6708 -3.7645 15 14 2.7954 -7.6874 -3.9877 16 1 3.6813 -8.3771 -3.0156 17 1 1.8983 -8.6803 -4.6314 18 1 3.6232 -7.0220 -5.0255 19 6 -0.2204 -5.0224 -1.6467 20 6 -0.0604 -3.7127 -2.3749 21 8 1.0126 -3.1574 -2.3910 22 8 -1.1101 -3.1630 -3.0058 23 6 1.4761 -2.4095 0.1355 24 1 -0.3632 -1.0231 0.0967 25 1 -0.3633 0.5952 0.8378 26 1 -0.3634 0.4279 -0.9343 27 1 2.3834 1.5810 -1.0275 28 1 1.6064 2.0295 0.5097 29 1 3.1479 1.1396 0.5181 30 1 4.0837 -0.2845 -0.2297 31 1 5.3101 -2.4180 -0.2102 32 1 4.0869 -4.5413 0.0210 33 1 2.0611 -5.6362 0.7823 34 1 0.5220 -4.7464 0.8708 35 1 0.8063 -5.7923 -4.7214 36 1 -0.5375 -5.7926 -2.3497 37 1 -0.9710 -4.9134 -0.8639 38 1 -0.9587 -2.3226 -3.4594 39 1 0.4005 -2.4087 0.2327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830644200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:24 Heat of formation + Delta-G solvation = -34.234079 kcal Electronic energy + Delta-G solvation = -22910.397041 eV Core-core repulsion = 19625.868288 eV Total energy + Delta-G solvation = -3284.528754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67197 -40.07481 -37.83428 -36.66746 -36.01331 -33.69452 -31.87397 -30.82620 -29.40140 -28.87936 -27.05763 -25.53301 -24.19764 -22.38576 -21.91581 -20.90228 -18.77536 -18.37493 -17.97075 -17.11860 -16.82869 -16.55107 -16.23032 -15.91320 -15.77939 -15.28297 -15.04560 -14.98995 -14.47375 -14.27837 -13.46687 -13.35403 -13.26032 -13.13182 -12.86848 -12.84021 -12.76716 -12.58822 -12.30317 -12.17393 -11.99218 -11.77604 -11.71412 -11.57101 -10.92982 -10.55900 -10.48657 -9.37684 -8.91102 -7.99815 -7.88821 -5.28178 0.79062 0.96166 1.47033 1.49520 1.57971 2.23930 2.37914 2.50677 2.89928 3.16987 3.37871 3.80900 4.03736 4.16063 4.26883 4.40342 4.51211 4.52041 4.60203 4.69664 4.76080 4.76724 4.77530 4.88744 4.93300 5.05081 5.19285 5.28190 5.33830 5.41636 5.58936 5.62676 5.82606 6.09388 6.19274 6.29112 6.29405 6.52149 6.76061 7.08571 7.70862 7.91586 8.18967 9.16878 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.006862 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.610579 B = 4079.217630 C = 4703.407787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.651 5.651 3 C 0.097 3.903 4 C 0.202 3.798 5 C -0.218 4.218 6 C -0.089 4.089 7 C -0.179 4.179 8 C -0.040 4.040 9 C 0.171 3.829 10 N -0.571 5.571 11 C -0.239 4.239 12 H 0.081 0.919 13 C -0.052 4.052 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.307 1.307 19 C 0.189 3.811 20 C 0.476 3.524 21 O -0.531 6.531 22 O -0.541 6.541 23 C -0.173 4.173 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.392 0.608 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 10.014 8.756 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.364 5.364 3 C -0.046 4.046 4 C 0.101 3.899 5 C -0.241 4.241 6 C -0.107 4.107 7 C -0.200 4.200 8 C -0.044 4.044 9 C 0.046 3.954 10 N -0.290 5.290 11 C -0.369 4.369 12 H 0.099 0.901 13 C -0.245 4.245 14 N -0.584 5.584 15 Si 0.802 3.198 16 H -0.190 1.190 17 H -0.214 1.214 18 H -0.235 1.235 19 C 0.060 3.940 20 C 0.317 3.683 21 O -0.418 6.418 22 O -0.353 6.353 23 C -0.196 4.196 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.642 9.882 8.830 13.353 hybrid contribution 0.808 0.088 -1.673 1.860 sum -0.834 9.970 7.157 12.301 Atomic orbital electron populations 1.21665 0.79263 1.02528 1.01401 1.46397 1.05415 1.03125 1.81496 1.21642 0.97476 0.84474 1.00959 1.17866 0.91595 0.86176 0.94240 1.20661 0.92504 0.98572 1.12356 1.20982 0.99733 0.92139 0.97860 1.20775 0.94422 0.97552 1.07231 1.20580 0.94072 0.95968 0.93746 1.20256 0.97512 0.90879 0.86764 1.44278 1.17233 1.51420 1.16104 1.19628 1.10699 1.16247 0.90294 0.90148 1.25557 1.00647 1.01287 0.97047 1.69842 1.39591 1.42008 1.06939 0.85110 0.78113 0.78439 0.78164 1.19008 1.21436 1.23527 1.20401 0.87429 0.90742 0.95426 1.25220 0.80937 0.86266 0.75895 1.90584 1.28429 1.62877 1.59883 1.84574 1.43250 1.41331 1.66114 1.20309 0.98252 0.91204 1.09827 0.92002 0.90610 0.93285 0.94258 0.89525 0.91266 0.85318 0.85345 0.87878 0.91429 0.91087 0.94400 0.88037 0.90872 0.75051 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.34 10.62 127.77 1.36 3.70 16 2 N -0.65 -19.10 3.41 -747.27 -2.55 -21.64 16 3 C 0.10 2.11 10.08 127.77 1.29 3.40 16 4 C 0.20 7.34 6.53 38.22 0.25 7.59 16 5 C -0.22 -7.74 9.16 22.40 0.21 -7.53 16 6 C -0.09 -3.28 10.04 22.25 0.22 -3.06 16 7 C -0.18 -7.40 9.70 22.29 0.22 -7.18 16 8 C -0.04 -1.67 4.37 -19.89 -0.09 -1.76 16 9 C 0.17 6.90 5.83 85.63 0.50 7.40 16 10 N -0.57 -27.21 2.13 -710.67 -1.51 -28.73 16 11 C -0.24 -12.56 9.74 84.03 0.82 -11.74 16 12 H 0.08 4.12 7.82 -2.91 -0.02 4.10 16 13 C -0.05 -2.82 5.21 84.86 0.44 -2.38 16 14 N -0.94 -53.05 8.58 21.65 0.19 -52.86 16 15 Si 0.97 45.22 29.56 68.60 2.03 47.25 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 19 C 0.19 8.71 5.54 85.63 0.47 9.19 16 20 C 0.48 22.54 6.13 71.24 0.44 22.98 16 21 O -0.53 -28.29 13.61 21.96 0.30 -27.99 16 22 O -0.54 -21.99 13.42 -51.49 -0.69 -22.68 16 23 C -0.17 -6.77 6.58 22.40 0.15 -6.62 16 24 H 0.06 1.72 5.31 -2.39 -0.01 1.71 16 25 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 29 H 0.07 1.43 6.49 -2.39 -0.02 1.42 16 30 H 0.13 3.84 6.33 -2.91 -0.02 3.82 16 31 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.07 2.59 7.97 -2.39 -0.02 2.57 16 34 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 35 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.10 5.20 6.16 -2.39 -0.01 5.19 16 37 H 0.07 2.84 7.94 -2.39 -0.02 2.82 16 38 H 0.39 13.06 9.10 -74.06 -0.67 12.38 16 39 H 0.11 3.98 5.74 -2.91 -0.02 3.96 16 Total: -1.00 -68.21 319.24 4.43 -63.79 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.39 Total: 28.90 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.27 Total: 13.98 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -3.87 Total: -103.23 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.39 Total: -50.67 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.21 4.43 -63.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830644200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.552 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds