Wall clock time and date at job start Tue Mar 31 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 6 6 C 1.50707 * 109.47012 * 254.99837 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34770 * 120.00029 * 269.99919 * 4 3 2 13 13 O 1.21587 * 120.00059 * 179.97438 * 12 4 3 14 14 N 1.34773 * 120.00168 * 0.02562 * 12 4 3 15 15 C 1.46504 * 120.00347 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47628 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99585 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00268 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00424 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46988 * 59.99459 * 20 18 16 22 22 H 1.48499 * 109.47274 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46835 * 299.99694 * 20 18 16 24 24 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 26 26 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 27 27 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 28 28 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 29 29 H 1.09005 * 109.47643 * 135.00298 * 5 4 3 30 30 H 1.09000 * 109.47513 * 14.99462 * 5 4 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 35 35 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 36 36 H 0.96997 * 120.00203 * 359.97438 * 14 12 4 37 37 H 1.09002 * 109.46817 * 300.00023 * 15 14 12 38 38 H 1.09002 * 109.46917 * 59.99199 * 15 14 12 39 39 H 0.96991 * 120.00428 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1476 1.5170 -1.2696 6 6 4.8237 0.1939 -1.5213 7 6 4.1596 -0.8008 -2.2146 8 6 4.7800 -2.0143 -2.4459 9 6 6.0646 -2.2329 -1.9845 10 6 6.7267 -1.2402 -1.2866 11 6 6.1080 -0.0250 -1.0593 12 6 4.0902 1.5120 1.1663 13 8 5.3023 1.6075 1.1658 14 7 3.4190 1.4581 2.3338 15 6 4.1498 1.5152 3.6022 16 6 3.1742 1.4366 4.7481 17 1 2.1156 1.3529 4.5512 18 6 3.6329 1.4725 6.0477 19 7 4.9220 1.5749 6.2876 20 14 2.4235 1.3758 7.4682 21 1 1.6685 0.0996 7.3893 22 1 3.1643 1.4336 8.7539 23 1 1.4764 2.5170 7.3903 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.8988 2.3054 -1.2212 30 1 3.4504 1.7287 -2.0803 31 1 3.1561 -0.6298 -2.5755 32 1 4.2611 -2.7915 -2.9872 33 1 6.5494 -3.1808 -2.1657 34 1 7.7287 -1.4125 -0.9223 35 1 6.6271 0.7523 -0.5183 36 1 2.4521 1.3815 2.3342 37 1 4.8448 0.6774 3.6591 38 1 4.7044 2.4518 3.6602 39 1 5.2447 1.5998 7.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838573711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:35 Heat of formation + Delta-G solvation = -3.315413 kcal Electronic energy + Delta-G solvation = -21805.430995 eV Core-core repulsion = 18522.242975 eV Total energy + Delta-G solvation = -3283.188020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.84085 -38.67868 -37.14891 -34.50263 -33.54684 -32.35287 -31.50902 -30.79046 -29.70187 -27.44383 -25.50651 -23.00170 -22.56739 -22.38540 -21.28372 -19.94912 -18.50254 -17.15118 -16.56633 -16.05113 -15.72344 -15.05003 -14.89704 -14.87106 -14.57529 -14.39157 -13.94561 -13.34433 -13.21547 -13.11733 -12.73464 -12.51331 -12.16186 -12.14375 -11.95370 -11.75904 -11.45662 -11.19236 -10.97885 -10.88406 -10.85748 -10.31724 -10.20454 -9.52134 -9.37284 -8.86426 -8.74618 -8.70546 -8.60320 -7.75916 -6.13760 -4.20084 1.26652 1.50814 2.25488 3.27356 3.31879 3.33611 3.73812 3.87334 4.11385 4.38324 4.81722 4.89282 4.98522 5.05710 5.11830 5.17072 5.20059 5.22386 5.32743 5.39273 5.53556 5.72801 5.74596 5.80766 5.83916 6.02558 6.05173 6.17941 6.49074 6.62408 6.71928 6.77792 7.08932 7.11238 7.49633 7.54726 7.56753 7.87493 8.03559 8.75995 8.89216 9.24777 9.47207 10.96481 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.004775 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.220093 B = 5862.002763 C = 6625.606293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.017 3.983 3 O -0.146 6.146 4 N -0.496 5.496 5 C 0.180 3.820 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.126 4.126 11 C -0.077 4.077 12 C 0.704 3.296 13 O -0.579 6.579 14 N -0.719 5.719 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.391 0.609 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -5.532 -17.833 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 O -0.152 6.152 4 N -0.279 5.279 5 C 0.058 3.942 6 C -0.117 4.117 7 C -0.127 4.127 8 C -0.150 4.150 9 C -0.136 4.136 10 C -0.144 4.144 11 C -0.095 4.095 12 C 0.406 3.594 13 O -0.457 6.457 14 N -0.371 5.371 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.524 5.524 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.225 0.775 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.411 -5.244 -17.588 18.667 hybrid contribution -1.173 -0.559 0.858 1.557 sum -4.585 -5.803 -16.730 18.291 Atomic orbital electron populations 1.21712 0.92644 1.02728 1.03326 1.23120 0.95574 0.85801 1.01606 1.90612 1.02966 1.24853 1.96720 1.49533 0.93818 1.79307 1.05236 1.20383 0.95000 0.94414 0.84366 1.20357 0.95183 0.96979 0.99215 1.21011 0.99245 0.93448 0.99005 1.21038 0.95528 0.97140 1.01323 1.21156 0.95138 0.98947 0.98342 1.21228 1.00322 0.93813 0.99066 1.21421 0.94466 0.97699 0.95954 1.16081 0.84950 0.78492 0.79896 1.90868 1.10916 1.59260 1.84676 1.45766 1.10562 1.75374 1.05366 1.19026 0.92051 0.97613 0.76821 1.21172 0.93335 1.52765 0.90672 0.92038 1.24922 0.95394 0.94745 0.98832 1.69963 1.12764 1.48730 1.20895 0.86478 0.80746 0.78693 0.81008 1.20126 1.21062 1.20036 0.90686 0.91287 0.91835 0.92531 0.92209 0.88459 0.89027 0.86552 0.86425 0.86422 0.86090 0.84409 0.77542 0.95706 0.95559 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.06 16 2 C 0.02 0.22 7.04 37.16 0.26 0.49 16 3 O -0.15 -2.25 10.19 -11.47 -0.12 -2.37 16 4 N -0.50 -8.46 3.01 -66.41 -0.20 -8.66 16 5 C 0.18 2.51 5.85 -5.19 -0.03 2.48 16 6 C -0.12 -1.63 5.25 -104.62 -0.55 -2.18 16 7 C -0.11 -1.31 8.93 -39.58 -0.35 -1.67 16 8 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 9 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 10 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 11 C -0.08 -1.17 8.78 -39.58 -0.35 -1.52 16 12 C 0.70 15.10 8.23 -86.93 -0.72 14.39 16 13 O -0.58 -13.79 13.88 5.29 0.07 -13.72 16 14 N -0.72 -16.36 5.52 -66.41 -0.37 -16.72 16 15 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 16 C -0.54 -14.98 9.28 -34.45 -0.32 -15.30 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.66 6.47 -51.93 -0.34 0.33 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.37 7.84 -51.93 -0.41 0.97 16 30 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.12 1.18 7.26 -52.48 -0.38 0.80 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.14 2.31 6.76 -52.49 -0.35 1.96 16 36 H 0.39 8.17 7.39 -40.82 -0.30 7.87 16 37 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -31.85 334.13 -8.39 -40.24 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.54 Total: 6.91 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.99 Total: -1.24 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.17 Total: -50.92 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.04 Total: -16.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -8.39 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838573711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.926 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds