Wall clock time and date at job start Tue Mar 31 2020 01:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42888 * 109.47283 * 2 1 4 4 N 1.41604 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99771 * 90.00302 * 4 3 2 6 6 C 1.50707 * 109.47012 * 254.99837 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34770 * 120.00029 * 269.99919 * 4 3 2 13 13 O 1.21587 * 120.00059 * 179.97438 * 12 4 3 14 14 N 1.34773 * 120.00168 * 0.02562 * 12 4 3 15 15 C 1.46504 * 120.00347 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47628 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99585 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00268 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00424 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46988 * 59.99459 * 20 18 16 22 22 H 1.48499 * 109.47274 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46835 * 299.99694 * 20 18 16 24 24 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46935 * 299.99912 * 1 2 3 26 26 H 1.08992 * 109.47445 * 59.99487 * 1 2 3 27 27 H 1.09004 * 109.46432 * 240.00064 * 2 1 3 28 28 H 1.09000 * 109.47098 * 120.00448 * 2 1 3 29 29 H 1.09005 * 109.47643 * 135.00298 * 5 4 3 30 30 H 1.09000 * 109.47513 * 14.99462 * 5 4 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 35 35 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 36 36 H 0.96997 * 120.00203 * 359.97438 * 14 12 4 37 37 H 1.09002 * 109.46817 * 300.00023 * 15 14 12 38 38 H 1.09002 * 109.46917 * 59.99199 * 15 14 12 39 39 H 0.96991 * 120.00428 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 7 3.4180 1.4589 -0.0006 5 6 4.1476 1.5170 -1.2696 6 6 4.8237 0.1939 -1.5213 7 6 4.1596 -0.8008 -2.2146 8 6 4.7800 -2.0143 -2.4459 9 6 6.0646 -2.2329 -1.9845 10 6 6.7267 -1.2402 -1.2866 11 6 6.1080 -0.0250 -1.0593 12 6 4.0902 1.5120 1.1663 13 8 5.3023 1.6075 1.1658 14 7 3.4190 1.4581 2.3338 15 6 4.1498 1.5152 3.6022 16 6 3.1742 1.4366 4.7481 17 1 2.1156 1.3529 4.5512 18 6 3.6329 1.4725 6.0477 19 7 4.9220 1.5749 6.2876 20 14 2.4235 1.3758 7.4682 21 1 1.6685 0.0996 7.3893 22 1 3.1643 1.4336 8.7539 23 1 1.4764 2.5170 7.3903 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.8988 2.3054 -1.2212 30 1 3.4504 1.7287 -2.0803 31 1 3.1561 -0.6298 -2.5755 32 1 4.2611 -2.7915 -2.9872 33 1 6.5494 -3.1808 -2.1657 34 1 7.7287 -1.4125 -0.9223 35 1 6.6271 0.7523 -0.5183 36 1 2.4521 1.3815 2.3342 37 1 4.8448 0.6774 3.6591 38 1 4.7044 2.4518 3.6602 39 1 5.2447 1.5998 7.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838573711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:34 Heat of formation + Delta-G solvation = -23.019773 kcal Electronic energy + Delta-G solvation = -21806.285440 eV Core-core repulsion = 18522.242975 eV Total energy + Delta-G solvation = -3284.042465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.28231 -39.87565 -38.51667 -36.33257 -34.93425 -34.35358 -32.62151 -31.77788 -30.87985 -29.34294 -26.93398 -24.59796 -23.80109 -23.49571 -22.52956 -21.47797 -20.18075 -18.48925 -18.09584 -17.64782 -16.99962 -16.72010 -16.23462 -15.98528 -15.90180 -15.88190 -15.39032 -14.98315 -14.42926 -14.28202 -14.04789 -13.83892 -13.65984 -13.46330 -13.15558 -13.05165 -12.91857 -12.69061 -12.47700 -12.24966 -12.18714 -11.89475 -11.52007 -11.50431 -11.06604 -10.80393 -10.27630 -9.80904 -9.77218 -9.58910 -8.29159 -6.45845 0.19811 0.50497 1.00730 1.42503 1.46872 1.55146 2.04692 2.33045 2.57059 2.89386 3.05449 3.77454 3.83244 3.95171 4.03631 4.15452 4.21126 4.25553 4.30236 4.44344 4.53160 4.67865 4.74431 4.90387 4.97147 5.04421 5.07565 5.16677 5.24222 5.24889 5.40140 5.47610 5.52890 5.59756 5.63711 5.70060 5.82718 6.10732 6.16437 6.63869 7.12535 7.23498 7.54974 8.82871 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.004775 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.220093 B = 5862.002763 C = 6625.606293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 O -0.148 6.148 4 N -0.488 5.488 5 C 0.177 3.823 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.143 4.143 11 C -0.106 4.106 12 C 0.700 3.300 13 O -0.611 6.611 14 N -0.719 5.719 15 C 0.287 3.713 16 C -0.557 4.557 17 H 0.078 0.922 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.263 1.263 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.401 0.599 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 -7.083 -19.112 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 O -0.153 6.153 4 N -0.269 5.269 5 C 0.058 3.942 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.147 4.147 9 C -0.135 4.135 10 C -0.161 4.161 11 C -0.125 4.125 12 C 0.402 3.598 13 O -0.492 6.492 14 N -0.372 5.372 15 C 0.164 3.836 16 C -0.595 4.595 17 H 0.096 0.904 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.187 1.187 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.236 0.764 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.458 -6.799 -18.941 21.135 hybrid contribution -0.213 -0.125 1.133 1.159 sum -6.672 -6.924 -17.808 20.239 Atomic orbital electron populations 1.21741 0.89925 1.04322 1.03730 1.23346 0.97543 0.84247 1.01319 1.90604 1.01114 1.26876 1.96728 1.49315 0.95007 1.77980 1.04586 1.20635 0.95445 0.94585 0.83584 1.20367 0.94864 0.97592 1.00263 1.21305 1.00198 0.92996 0.97954 1.21484 0.95236 0.97549 1.00395 1.21516 0.95541 0.99351 0.97135 1.21412 1.00983 0.93814 0.99853 1.21349 0.95686 0.98050 0.97417 1.16206 0.84742 0.78179 0.80709 1.90854 1.12504 1.60224 1.85599 1.45415 1.10737 1.76374 1.04686 1.18447 0.91769 0.94098 0.79279 1.21508 0.94001 1.52954 0.91010 0.90401 1.26022 0.97390 0.93734 1.02066 1.70124 1.15254 1.49493 1.21822 0.85216 0.78022 0.79460 0.76570 1.18690 1.20787 1.18735 0.88469 0.92076 0.90251 0.90792 0.94514 0.89564 0.85355 0.83874 0.83003 0.83680 0.85580 0.87535 0.76378 0.99445 0.99307 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.01 0.31 7.04 71.98 0.51 0.82 16 3 O -0.15 -4.33 10.19 -38.79 -0.40 -4.73 16 4 N -0.49 -16.63 3.01 -482.30 -1.45 -18.08 16 5 C 0.18 4.88 5.85 85.64 0.50 5.39 16 6 C -0.13 -3.59 5.25 -19.86 -0.10 -3.69 16 7 C -0.11 -2.28 8.93 22.27 0.20 -2.08 16 8 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 9 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 10 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 11 C -0.11 -3.40 8.78 22.27 0.20 -3.21 16 12 C 0.70 31.29 8.23 179.06 1.47 32.77 16 13 O -0.61 -31.16 13.88 -3.99 -0.06 -31.21 16 14 N -0.72 -33.96 5.52 -482.30 -2.66 -36.63 16 15 C 0.29 16.48 5.43 85.63 0.46 16.94 16 16 C -0.56 -31.38 9.28 25.60 0.24 -31.15 16 17 H 0.08 4.04 7.60 -2.91 -0.02 4.01 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -56.64 13.29 21.44 0.28 -56.36 16 20 Si 0.98 42.98 29.54 68.60 2.03 45.00 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.49 6.47 -2.39 -0.02 1.47 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 2.55 7.84 -2.38 -0.02 2.53 16 30 H 0.13 2.54 8.08 -2.39 -0.02 2.52 16 31 H 0.14 2.27 7.26 -2.91 -0.02 2.24 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.11 3.99 6.76 -2.91 -0.02 3.97 16 36 H 0.40 17.00 7.39 -92.71 -0.69 16.31 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -72.58 334.13 3.46 -69.13 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.36 Total: 26.04 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.35 Total: 6.84 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.83 Total: -111.07 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.45 Total: -35.94 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -72.58 3.46 -69.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838573711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.107 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds