Wall clock time and date at job start Tue Mar 31 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00008 * 2 1 4 4 C 1.39012 * 110.99873 * 123.95257 * 2 1 3 5 5 N 1.32424 * 119.70246 * 295.38298 * 4 2 1 6 6 C 1.31949 * 121.61860 * 180.02562 * 5 4 2 7 7 C 1.38061 * 120.85508 * 359.97407 * 6 5 4 8 8 C 1.38840 * 119.32740 * 0.02562 * 7 6 5 9 9 C 1.38339 * 118.50702 * 0.27886 * 8 7 6 10 10 C 1.50699 * 120.44764 * 179.72383 * 9 8 7 11 11 O 1.45194 * 109.47464 * 5.32258 * 10 9 8 12 12 C 1.34229 * 117.00149 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00206 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47077 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47027 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00228 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47450 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46781 * 120.00327 * 20 18 16 23 23 H 1.48498 * 109.47146 * 239.99698 * 20 18 16 24 24 H 1.09000 * 109.47192 * 296.04849 * 1 2 3 25 25 H 1.09010 * 109.47168 * 56.04702 * 1 2 3 26 26 H 1.09001 * 109.47552 * 176.04585 * 1 2 3 27 27 H 1.09005 * 109.46951 * 188.49949 * 3 2 1 28 28 H 1.09003 * 109.47022 * 308.49085 * 3 2 1 29 29 H 1.08998 * 109.47442 * 68.49892 * 3 2 1 30 30 H 1.08001 * 119.56712 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.33556 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.74565 * 179.97438 * 8 7 6 33 33 H 1.08994 * 109.47211 * 125.32582 * 10 9 8 34 34 H 1.09008 * 109.47162 * 245.32249 * 10 9 8 35 35 H 1.09002 * 109.46849 * 300.00289 * 14 12 11 36 36 H 1.08997 * 109.46621 * 59.99867 * 14 12 11 37 37 H 1.08994 * 109.47416 * 300.00045 * 15 14 12 38 38 H 1.09002 * 109.46889 * 60.00279 * 15 14 12 39 39 H 0.96992 * 120.00004 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9671 -0.7248 1.0765 5 7 1.7419 -0.3036 2.3116 6 6 2.1973 -0.9617 3.3608 7 6 2.9296 -2.1217 3.2058 8 6 3.1879 -2.5972 1.9272 9 6 2.7030 -1.8825 0.8465 10 6 2.9629 -2.3555 -0.5605 11 8 3.6316 -3.6437 -0.5224 12 6 3.9358 -4.2076 -1.7019 13 8 3.6532 -3.6432 -2.7322 14 6 4.6299 -5.5447 -1.7413 15 6 4.8592 -5.9577 -3.1965 16 6 5.5527 -7.2950 -3.2359 17 1 5.8043 -7.8001 -2.3150 18 6 5.8660 -7.8738 -4.4474 19 7 5.5601 -7.2585 -5.5688 20 14 6.7263 -9.5312 -4.4961 21 1 6.9586 -10.0093 -3.1095 22 1 5.8755 -10.5093 -5.2205 23 1 8.0280 -9.3928 -5.1972 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0745 1.3463 -0.1519 28 1 1.5285 1.9398 -0.8044 29 1 1.7740 1.8456 0.9561 30 1 1.9944 -0.5879 4.3535 31 1 3.2979 -2.6539 4.0704 32 1 3.7587 -3.5021 1.7794 33 1 2.0162 -2.4531 -1.0917 34 1 3.5958 -1.6328 -1.0757 35 1 5.5893 -5.4712 -1.2292 36 1 4.0094 -6.2908 -1.2449 37 1 3.9000 -6.0310 -3.7089 38 1 5.4799 -5.2114 -3.6924 39 1 5.7802 -7.6658 -6.4211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838952570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:34 Heat of formation + Delta-G solvation = -47.064299 kcal Electronic energy + Delta-G solvation = -20860.677833 eV Core-core repulsion = 17575.592720 eV Total energy + Delta-G solvation = -3285.085114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91566 -39.82111 -37.08048 -36.28173 -33.58611 -33.10020 -31.28843 -30.99030 -27.85630 -27.28759 -25.69949 -25.26869 -22.81752 -21.73543 -21.66858 -19.76381 -17.53215 -17.40950 -16.67655 -16.35260 -16.27751 -15.83567 -15.50142 -14.99060 -14.46008 -14.32831 -14.12480 -13.99733 -13.43170 -13.30273 -12.58286 -12.50735 -12.35917 -12.28901 -12.25310 -11.95659 -11.61564 -11.17925 -10.98551 -10.63508 -10.63071 -10.06272 -10.04816 -9.90580 -9.87799 -9.55836 -9.16589 -9.00125 -8.89407 -8.38281 -6.01813 -4.06704 0.77969 1.04356 2.83608 3.02006 3.30555 3.38032 3.40971 3.41728 3.45952 4.20768 4.43863 4.63706 4.71927 4.86445 4.91803 5.12602 5.14073 5.26038 5.27688 5.33717 5.36888 5.44432 5.46212 5.63484 5.64526 5.69626 5.93655 6.00419 6.11329 6.19790 6.26409 6.48982 6.65631 6.94342 6.97836 7.63679 7.66653 7.73433 7.97925 8.25331 8.41194 9.00705 9.57453 11.09227 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031992 B = 0.003077 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.009309 B = 9096.696898 C = 9776.479848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.496 5.496 3 C 0.028 3.972 4 C 0.293 3.707 5 N -0.509 5.509 6 C 0.103 3.897 7 C -0.174 4.174 8 C -0.052 4.052 9 C -0.106 4.106 10 C 0.122 3.878 11 O -0.371 6.371 12 C 0.458 3.542 13 O -0.501 6.501 14 C -0.102 4.102 15 C 0.032 3.968 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 14.267 17.486 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.219 5.219 3 C -0.119 4.119 4 C 0.065 3.935 5 N -0.221 5.221 6 C -0.055 4.055 7 C -0.194 4.194 8 C -0.078 4.078 9 C -0.109 4.109 10 C 0.048 3.952 11 O -0.289 6.289 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.140 4.140 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.198 15.013 16.656 23.876 hybrid contribution 0.589 -1.084 0.430 1.307 sum -7.609 13.929 17.086 23.321 Atomic orbital electron populations 1.22407 0.85010 1.02820 1.01562 1.60198 1.09561 1.15371 1.36758 1.22404 1.00903 0.87039 1.01534 1.19499 0.94461 0.92000 0.87583 1.67710 1.21521 1.33460 0.99417 1.22526 0.93933 0.91997 0.97038 1.22185 1.00778 0.98126 0.98270 1.21569 0.95905 0.99215 0.91106 1.20364 0.99173 0.95439 0.95941 1.21319 0.98207 0.83064 0.92618 1.86457 1.71458 1.34819 1.36206 1.24743 0.76194 0.88426 0.80504 1.90651 1.50035 1.63528 1.34524 1.21766 0.99597 0.87831 1.04799 1.19028 0.98224 0.96384 0.86879 1.21189 1.38868 1.03980 0.92569 0.92265 1.25024 0.95871 0.97794 0.95674 1.70002 1.46925 1.38408 0.97397 0.86493 0.79288 0.83816 0.78119 1.19654 1.20978 1.20973 0.94034 0.90433 0.91280 0.91299 0.90576 0.93800 0.82792 0.84373 0.83136 0.89445 0.89592 0.88966 0.88964 0.95546 0.95539 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.46 60.06 0.57 0.85 16 2 N -0.50 -5.63 4.36 -188.98 -0.82 -6.45 16 3 C 0.03 0.27 9.53 60.06 0.57 0.84 16 4 C 0.29 3.59 5.33 -155.01 -0.83 2.77 16 5 N -0.51 -5.94 9.45 -12.44 -0.12 -6.05 16 6 C 0.10 0.97 11.17 -17.57 -0.20 0.77 16 7 C -0.17 -1.55 10.10 -39.42 -0.40 -1.95 16 8 C -0.05 -0.57 9.48 -39.32 -0.37 -0.95 16 9 C -0.11 -1.34 5.91 -104.27 -0.62 -1.96 16 10 C 0.12 1.77 5.28 36.01 0.19 1.96 16 11 O -0.37 -5.98 8.78 -39.25 -0.34 -6.32 16 12 C 0.46 8.91 7.96 36.01 0.29 9.20 16 13 O -0.50 -11.40 15.73 -18.75 -0.29 -11.69 16 14 C -0.10 -2.05 5.75 -27.88 -0.16 -2.21 16 15 C 0.03 0.84 4.26 -27.89 -0.12 0.72 16 16 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.04 0.40 7.93 -51.93 -0.41 -0.01 16 25 H 0.08 0.61 8.07 -51.92 -0.42 0.19 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.59 8.04 -51.93 -0.42 0.18 16 29 H 0.04 0.43 7.70 -51.93 -0.40 0.03 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.15 1.60 7.11 -52.49 -0.37 1.22 16 33 H 0.09 1.31 8.13 -51.93 -0.42 0.88 16 34 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -32.87 337.33 -8.05 -40.92 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.78 Total: -2.25 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.48 Total: -3.36 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.21 Total: -38.69 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.64 Total: -18.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.87 -8.05 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838952570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.143 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds