Wall clock time and date at job start Tue Mar 31 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00008 * 2 1 4 4 C 1.39012 * 110.99873 * 123.95257 * 2 1 3 5 5 N 1.32424 * 119.70246 * 295.38298 * 4 2 1 6 6 C 1.31949 * 121.61860 * 180.02562 * 5 4 2 7 7 C 1.38061 * 120.85508 * 359.97407 * 6 5 4 8 8 C 1.38840 * 119.32740 * 0.02562 * 7 6 5 9 9 C 1.38339 * 118.50702 * 0.27886 * 8 7 6 10 10 C 1.50699 * 120.44764 * 179.72383 * 9 8 7 11 11 O 1.45194 * 109.47464 * 5.32258 * 10 9 8 12 12 C 1.34229 * 117.00149 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00206 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47077 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47027 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00228 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00020 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47450 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46781 * 120.00327 * 20 18 16 23 23 H 1.48498 * 109.47146 * 239.99698 * 20 18 16 24 24 H 1.09000 * 109.47192 * 296.04849 * 1 2 3 25 25 H 1.09010 * 109.47168 * 56.04702 * 1 2 3 26 26 H 1.09001 * 109.47552 * 176.04585 * 1 2 3 27 27 H 1.09005 * 109.46951 * 188.49949 * 3 2 1 28 28 H 1.09003 * 109.47022 * 308.49085 * 3 2 1 29 29 H 1.08998 * 109.47442 * 68.49892 * 3 2 1 30 30 H 1.08001 * 119.56712 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.33556 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.74565 * 179.97438 * 8 7 6 33 33 H 1.08994 * 109.47211 * 125.32582 * 10 9 8 34 34 H 1.09008 * 109.47162 * 245.32249 * 10 9 8 35 35 H 1.09002 * 109.46849 * 300.00289 * 14 12 11 36 36 H 1.08997 * 109.46621 * 59.99867 * 14 12 11 37 37 H 1.08994 * 109.47416 * 300.00045 * 15 14 12 38 38 H 1.09002 * 109.46889 * 60.00279 * 15 14 12 39 39 H 0.96992 * 120.00004 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9671 -0.7248 1.0765 5 7 1.7419 -0.3036 2.3116 6 6 2.1973 -0.9617 3.3608 7 6 2.9296 -2.1217 3.2058 8 6 3.1879 -2.5972 1.9272 9 6 2.7030 -1.8825 0.8465 10 6 2.9629 -2.3555 -0.5605 11 8 3.6316 -3.6437 -0.5224 12 6 3.9358 -4.2076 -1.7019 13 8 3.6532 -3.6432 -2.7322 14 6 4.6299 -5.5447 -1.7413 15 6 4.8592 -5.9577 -3.1965 16 6 5.5527 -7.2950 -3.2359 17 1 5.8043 -7.8001 -2.3150 18 6 5.8660 -7.8738 -4.4474 19 7 5.5601 -7.2585 -5.5688 20 14 6.7263 -9.5312 -4.4961 21 1 6.9586 -10.0093 -3.1095 22 1 5.8755 -10.5093 -5.2205 23 1 8.0280 -9.3928 -5.1972 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0745 1.3463 -0.1519 28 1 1.5285 1.9398 -0.8044 29 1 1.7740 1.8456 0.9561 30 1 1.9944 -0.5879 4.3535 31 1 3.2979 -2.6539 4.0704 32 1 3.7587 -3.5021 1.7794 33 1 2.0162 -2.4531 -1.0917 34 1 3.5958 -1.6328 -1.0757 35 1 5.5893 -5.4712 -1.2292 36 1 4.0094 -6.2908 -1.2449 37 1 3.9000 -6.0310 -3.7089 38 1 5.4799 -5.2114 -3.6924 39 1 5.7802 -7.6658 -6.4211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838952570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:34 Heat of formation + Delta-G solvation = -66.793544 kcal Electronic energy + Delta-G solvation = -20861.533358 eV Core-core repulsion = 17575.592720 eV Total energy + Delta-G solvation = -3285.940638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86891 -41.23927 -37.93807 -37.70319 -35.63250 -34.09710 -33.08712 -31.96042 -28.67275 -28.61137 -27.37371 -26.06284 -24.35131 -23.01444 -22.56313 -21.36714 -19.10147 -18.31127 -18.19952 -17.74355 -17.39097 -17.28621 -16.45471 -16.40511 -16.00139 -15.39752 -15.22686 -15.00319 -14.45426 -14.43640 -14.20266 -13.95478 -13.71222 -13.25153 -13.19573 -13.12131 -12.85184 -12.72396 -12.53280 -12.45264 -12.04172 -11.96093 -11.73092 -11.44564 -11.24988 -10.79944 -10.74132 -10.57245 -9.85041 -9.71344 -8.18544 -6.32140 -0.03215 0.21613 1.25124 1.44515 1.45638 1.58243 1.63357 2.44328 2.62683 2.65807 3.15532 3.38457 3.70884 3.85357 4.00614 4.10009 4.16120 4.23383 4.29335 4.36926 4.46023 4.48486 4.49430 4.54946 4.63323 4.71821 4.87833 4.89778 4.91993 5.13720 5.14810 5.43383 5.50035 5.50361 5.57470 5.72722 5.82722 6.14688 6.15734 6.79351 6.83722 6.88068 7.38189 8.94350 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031992 B = 0.003077 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.009309 B = 9096.696898 C = 9776.479848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.513 5.513 3 C 0.032 3.968 4 C 0.284 3.716 5 N -0.525 5.525 6 C 0.103 3.897 7 C -0.162 4.162 8 C -0.060 4.060 9 C -0.128 4.128 10 C 0.128 3.872 11 O -0.354 6.354 12 C 0.467 3.533 13 O -0.542 6.542 14 C -0.092 4.092 15 C 0.036 3.964 16 C -0.542 4.542 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.974 3.026 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.118 0.882 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 13.474 20.339 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.237 5.237 3 C -0.115 4.115 4 C 0.056 3.944 5 N -0.237 5.237 6 C -0.055 4.055 7 C -0.181 4.181 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.054 3.946 11 O -0.271 6.271 12 C 0.312 3.688 13 O -0.431 6.431 14 C -0.129 4.129 15 C -0.001 4.001 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.176 1.176 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.191 0.809 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.786 14.229 19.554 25.406 hybrid contribution 0.416 -0.753 -0.360 0.932 sum -7.370 13.476 19.194 24.583 Atomic orbital electron populations 1.22405 0.84233 1.02620 1.02179 1.60209 1.10386 1.16129 1.36940 1.22403 1.00632 0.86467 1.02009 1.19566 0.94624 0.92016 0.88172 1.67779 1.22218 1.34103 0.99583 1.23178 0.92724 0.91762 0.97797 1.22524 0.99515 0.97736 0.98364 1.21745 0.95907 0.99276 0.91694 1.20276 1.01185 0.96616 0.95056 1.21316 0.97252 0.81691 0.94335 1.86416 1.71030 1.35605 1.34014 1.24546 0.75421 0.88155 0.80671 1.90647 1.51797 1.64569 1.36129 1.21524 1.01661 0.88771 1.00944 1.18818 0.95465 0.95494 0.90318 1.21677 1.38397 1.04448 0.93406 0.90295 1.26104 0.96681 1.02272 0.95248 1.70168 1.48534 1.40674 0.98243 0.85267 0.77685 0.78241 0.79018 1.17550 1.20731 1.20714 0.94132 0.88892 0.92030 0.91921 0.88978 0.94024 0.79520 0.80897 0.82795 0.90433 0.90490 0.86339 0.86399 0.99204 0.99175 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.46 127.69 1.21 1.82 16 2 N -0.51 -11.62 4.36 -751.79 -3.28 -14.90 16 3 C 0.03 0.59 9.53 127.69 1.22 1.81 16 4 C 0.28 6.82 5.33 133.04 0.71 7.53 16 5 N -0.52 -11.43 9.45 -193.26 -1.83 -13.26 16 6 C 0.10 1.64 11.17 84.63 0.95 2.59 16 7 C -0.16 -2.38 10.10 22.37 0.23 -2.15 16 8 C -0.06 -1.22 9.48 22.44 0.21 -1.01 16 9 C -0.13 -3.18 5.91 -19.64 -0.12 -3.29 16 10 C 0.13 3.77 5.28 71.24 0.38 4.14 16 11 O -0.35 -11.22 8.78 -51.40 -0.45 -11.67 16 12 C 0.47 18.30 7.96 71.24 0.57 18.86 16 13 O -0.54 -25.63 15.73 21.97 0.35 -25.28 16 14 C -0.09 -3.61 5.75 29.85 0.17 -3.44 16 15 C 0.04 1.95 4.26 29.85 0.13 2.08 16 16 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 17 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 18 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 19 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 20 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 21 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.04 0.76 7.93 -2.39 -0.02 0.74 16 25 H 0.09 1.41 8.07 -2.38 -0.02 1.39 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 29 H 0.04 0.79 7.70 -2.39 -0.02 0.77 16 30 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.15 2.94 7.11 -2.91 -0.02 2.92 16 33 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 36 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 37 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 38 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -73.03 337.33 4.47 -68.56 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.03 Total: 9.55 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.34 Total: -0.61 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -4.82 Total: -86.02 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.11 Total: -36.95 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.03 4.47 -68.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838952570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.766 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds